Wall clock time and date at job start Tue Mar 31 2020 12:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46847 * 2 1 4 4 N 1.41602 * 114.00050 * 184.99067 * 3 2 1 5 5 C 1.46501 * 119.99582 * 275.12860 * 4 3 2 6 6 C 1.50706 * 109.47301 * 255.00177 * 5 4 3 7 7 C 1.38234 * 119.99416 * 269.72585 * 6 5 4 8 8 C 1.38236 * 119.99340 * 179.76684 * 7 6 5 9 9 C 1.38231 * 120.00108 * 0.50246 * 8 7 6 10 10 C 1.38232 * 120.00114 * 359.75459 * 9 8 7 11 11 C 1.38230 * 119.99696 * 89.99915 * 6 5 4 12 12 C 1.34769 * 120.00289 * 95.12862 * 4 3 2 13 13 O 1.21588 * 119.99691 * 186.40577 * 12 4 3 14 14 N 1.34774 * 120.00136 * 6.41421 * 12 4 3 15 15 C 1.46505 * 119.99937 * 185.18722 * 14 12 4 16 16 C 1.53001 * 109.46896 * 184.89785 * 15 14 12 17 17 C 1.50696 * 115.55313 * 53.90067 * 16 15 14 18 18 H 1.07999 * 120.00154 * 215.55099 * 17 16 15 19 19 C 1.37876 * 119.99759 * 35.27269 * 17 16 15 20 20 N 1.31512 * 120.00271 * 0.16521 * 19 17 16 21 21 Si 1.86799 * 119.99743 * 180.16519 * 19 17 16 22 22 H 1.48506 * 109.47219 * 65.00022 * 21 19 17 23 23 H 1.48502 * 109.47337 * 184.99986 * 21 19 17 24 24 H 1.48498 * 109.47594 * 305.00042 * 21 19 17 25 25 C 1.53004 * 117.49474 * 199.57162 * 16 15 14 26 26 C 1.53000 * 117.49547 * 268.22900 * 16 15 14 27 27 H 1.08996 * 109.46788 * 184.96217 * 1 2 3 28 28 H 1.08995 * 109.47097 * 304.96191 * 1 2 3 29 29 H 1.08999 * 109.47180 * 64.96715 * 1 2 3 30 30 H 1.09003 * 109.47144 * 240.00429 * 2 1 3 31 31 H 1.08993 * 109.47664 * 120.00017 * 2 1 3 32 32 H 1.09008 * 109.46872 * 14.99703 * 5 4 3 33 33 H 1.08997 * 109.47225 * 135.00048 * 5 4 3 34 34 H 1.07999 * 120.00342 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.99692 * 180.23484 * 8 7 6 36 36 H 1.08003 * 120.00157 * 179.72407 * 9 8 7 37 37 H 1.08001 * 120.00264 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.00786 * 0.02562 * 11 6 5 39 39 H 0.96999 * 120.00085 * 5.18217 * 14 12 4 40 40 H 1.08994 * 109.47457 * 64.89748 * 15 14 12 41 41 H 1.08999 * 109.46659 * 304.89685 * 15 14 12 42 42 H 0.97000 * 119.99814 * 174.98764 * 20 19 17 43 43 H 1.09001 * 117.49635 * 215.00303 * 25 16 15 44 44 H 1.08994 * 117.50113 * 0.02562 * 25 16 15 45 45 H 1.09003 * 117.50122 * 359.97326 * 26 16 15 46 46 H 1.09004 * 117.49769 * 144.97724 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4133 1.4608 -0.1125 5 6 4.2534 1.3699 1.0842 6 6 4.7457 2.7444 1.4580 7 6 5.9398 3.2142 0.9440 8 6 6.3890 4.4768 1.2831 9 6 5.6492 5.2654 2.1443 10 6 4.4578 4.7934 2.6625 11 6 4.0059 3.5328 2.3193 12 6 3.9794 1.6525 -1.3204 13 8 5.1898 1.6336 -1.4343 14 7 3.2040 1.8653 -2.4020 15 6 3.8116 1.9603 -3.7317 16 6 2.7371 2.3232 -4.7587 17 6 1.9294 3.5565 -4.4462 18 1 0.8819 3.5961 -4.7060 19 6 2.5264 4.6320 -3.8235 20 7 3.8015 4.5829 -3.5052 21 14 1.5241 6.1589 -3.4321 22 1 0.4780 5.8218 -2.4334 23 1 2.4168 7.2087 -2.8785 24 1 0.8806 6.6603 -4.6729 25 6 3.0382 2.0299 -6.2298 26 6 2.0228 1.1724 -5.4703 27 1 -0.3633 -1.0238 0.0889 28 1 -0.3633 0.5889 0.8422 29 1 -0.3633 0.4348 -0.9311 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.6701 0.9567 1.9071 33 1 5.1057 0.7214 0.8813 34 1 6.5201 2.5962 0.2749 35 1 7.3200 4.8454 0.8785 36 1 6.0024 6.2501 2.4128 37 1 3.8800 5.4093 3.3357 38 1 3.0755 3.1638 2.7247 39 1 2.2436 1.9554 -2.3001 40 1 4.2583 1.0020 -3.9964 41 1 4.5825 2.7309 -3.7246 42 1 4.2391 5.3649 -3.1338 43 1 2.6522 2.7290 -6.9716 44 1 4.0016 1.5780 -6.4660 45 1 2.3187 0.1568 -5.2072 46 1 0.9685 1.3072 -5.7121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838576417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:43 Heat of formation + Delta-G solvation = 16.614176 kcal Electronic energy + Delta-G solvation = -27922.750678 eV Core-core repulsion = 24201.125492 eV Total energy + Delta-G solvation = -3721.625186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11811 -39.86161 -38.72797 -38.19745 -35.10480 -34.58045 -34.08568 -32.44775 -31.74812 -30.79078 -28.21993 -27.46214 -25.97828 -23.80597 -23.44743 -22.97806 -22.53119 -21.23659 -21.07193 -19.66097 -18.49777 -17.89014 -17.46510 -16.82960 -16.62077 -16.24595 -16.08896 -15.97615 -15.84737 -15.61322 -15.32259 -14.72154 -14.37988 -14.26873 -14.09444 -13.72241 -13.53640 -13.40443 -13.33923 -13.11692 -12.95450 -12.90378 -12.62216 -12.50164 -12.31593 -12.14848 -12.02895 -11.85769 -11.57033 -11.36885 -10.96525 -10.85658 -10.64286 -10.18003 -10.05335 -9.77322 -9.70661 -9.39172 -7.92789 -6.15977 0.24727 0.54360 1.11145 1.40223 1.42540 1.48526 2.15740 2.41213 2.70808 2.93810 3.11979 3.65472 3.84803 3.90824 4.00895 4.10750 4.16806 4.25129 4.28451 4.29060 4.32389 4.44072 4.52430 4.55207 4.69001 4.76025 4.78131 4.81941 4.93562 4.97142 4.99368 5.11108 5.14043 5.18709 5.26569 5.31641 5.54834 5.54989 5.56269 5.62367 5.63396 5.72166 5.94073 6.01906 6.14205 6.21714 6.39643 6.83982 7.27319 7.48461 7.73052 8.94063 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.005636 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.726868 B = 4966.459083 C = 5990.119569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 O -0.157 6.157 4 N -0.494 5.494 5 C 0.180 3.820 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.142 4.142 9 C -0.121 4.121 10 C -0.135 4.135 11 C -0.104 4.104 12 C 0.708 3.292 13 O -0.613 6.613 14 N -0.691 5.691 15 C 0.193 3.807 16 C 0.008 3.992 17 C -0.503 4.503 18 H 0.055 0.945 19 C 0.039 3.961 20 N -0.882 5.882 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.294 1.294 24 H -0.271 1.271 25 C -0.196 4.196 26 C -0.185 4.185 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.399 0.601 40 H 0.016 0.984 41 H 0.078 0.922 42 H 0.253 0.747 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -6.656 13.188 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 O -0.162 6.162 4 N -0.277 5.277 5 C 0.061 3.939 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.160 4.160 9 C -0.139 4.139 10 C -0.153 4.153 11 C -0.123 4.123 12 C 0.410 3.590 13 O -0.495 6.495 14 N -0.341 5.341 15 C 0.068 3.932 16 C 0.007 3.993 17 C -0.540 4.540 18 H 0.074 0.926 19 C -0.163 4.163 20 N -0.519 5.519 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.196 1.196 25 C -0.235 4.235 26 C -0.222 4.222 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.233 0.767 40 H 0.034 0.966 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.976 -6.445 13.219 14.839 hybrid contribution -0.619 0.854 -0.311 1.100 sum -2.596 -5.591 12.908 14.304 Atomic orbital electron populations 1.21731 0.90686 1.04263 1.03182 1.23277 0.97058 0.84151 1.01502 1.90620 1.02312 1.27279 1.95973 1.49200 0.94855 1.78004 1.05593 1.20513 0.93869 0.93676 0.85891 1.20287 0.95350 0.98074 0.98656 1.21294 0.96638 0.96674 0.97534 1.21379 1.01130 0.94519 0.98957 1.21473 0.95305 1.00229 0.96891 1.21451 0.96727 0.96103 1.00990 1.21284 0.99241 0.94539 0.97220 1.15978 0.84774 0.78162 0.80036 1.90813 1.13111 1.61871 1.83700 1.44713 1.10252 1.73439 1.05686 1.20628 0.96086 0.96818 0.79637 1.19248 0.96294 0.94087 0.89650 1.20595 0.95583 0.99003 1.38860 0.92643 1.25511 0.95686 1.00639 0.94492 1.70021 1.10647 1.28816 1.42406 0.85885 0.78801 0.80067 0.78506 1.19853 1.22044 1.19621 1.22940 0.98964 1.03818 0.97773 1.22933 0.96987 0.95275 1.06996 0.88032 0.91073 0.92585 0.93573 0.90677 0.85903 0.89679 0.87166 0.85495 0.83951 0.83577 0.84363 0.76688 0.96617 0.90393 0.93732 0.90492 0.90511 0.89708 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.02 0.42 7.09 71.98 0.51 0.93 16 3 O -0.16 -5.03 10.21 -38.79 -0.40 -5.43 16 4 N -0.49 -17.71 3.01 -482.29 -1.45 -19.17 16 5 C 0.18 5.31 5.83 85.63 0.50 5.81 16 6 C -0.12 -3.93 5.25 -19.87 -0.10 -4.03 16 7 C -0.10 -3.64 8.95 22.27 0.20 -3.44 16 8 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 9 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 10 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 11 C -0.10 -2.92 9.70 22.27 0.22 -2.70 16 12 C 0.71 31.59 8.21 179.06 1.47 33.06 16 13 O -0.61 -30.48 14.18 -3.99 -0.06 -30.54 16 14 N -0.69 -31.84 5.08 -478.54 -2.43 -34.27 16 15 C 0.19 9.51 4.65 86.38 0.40 9.91 16 16 C 0.01 0.38 2.02 -52.93 -0.11 0.27 16 17 C -0.50 -26.18 8.42 25.60 0.22 -25.96 16 18 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.04 2.08 5.26 84.65 0.45 2.52 16 20 N -0.88 -49.94 10.30 21.45 0.22 -49.72 16 21 Si 0.94 43.46 29.54 68.60 2.03 45.48 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C -0.20 -8.48 9.96 30.62 0.30 -8.18 16 26 C -0.18 -7.41 9.92 30.62 0.30 -7.11 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.12 2.63 8.08 -2.38 -0.02 2.61 16 33 H 0.09 2.53 7.75 -2.39 -0.02 2.51 16 34 H 0.11 4.33 6.89 -2.91 -0.02 4.31 16 35 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.40 18.21 7.27 -92.71 -0.67 17.54 16 40 H 0.02 0.75 8.08 -2.39 -0.02 0.73 16 41 H 0.08 4.49 5.90 -2.39 -0.01 4.47 16 42 H 0.25 14.35 8.32 -92.71 -0.77 13.58 16 43 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 45 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 46 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -65.05 384.95 3.97 -61.08 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: 0.29 Total: 43.95 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.77 Total: -11.39 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -3.66 Total: -103.16 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.45 Total: -35.97 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.05 3.97 -61.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838576417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.697 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds