Wall clock time and date at job start Tue Mar 31 2020 12:59:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46906 * 111.00108 * 2 1
4 4 C 1.52997 * 112.84798 * 293.66524 * 3 2 1
5 5 N 1.46507 * 109.47004 * 312.16187 * 4 3 2
6 6 C 1.34775 * 120.00028 * 174.97515 * 5 4 3
7 7 O 1.21288 * 119.99934 * 0.02562 * 6 5 4
8 8 C 1.50700 * 120.00249 * 179.97438 * 6 5 4
9 9 C 1.50697 * 109.47174 * 179.97438 * 8 6 5
10 10 C 1.38317 * 119.96801 * 269.72653 * 9 8 6
11 11 C 1.38286 * 120.13722 * 179.76829 * 10 9 8
12 12 C 1.38119 * 120.06749 * 0.50889 * 11 10 9
13 13 C 1.38852 * 119.93442 * 359.74401 * 12 11 10
14 14 O 1.35748 * 120.07216 * 179.97438 * 13 12 11
15 15 C 1.34826 * 117.00019 * 5.76652 * 14 13 12
16 16 H 1.08004 * 120.00109 * 5.35378 * 15 14 13
17 17 C 1.38656 * 120.00413 * 185.35682 * 15 14 13
18 18 N 1.31562 * 119.99784 * 0.02562 * 17 15 14
19 19 Si 1.86796 * 120.00308 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47274 * 89.99821 * 19 17 15
21 21 H 1.48502 * 109.47137 * 210.00026 * 19 17 15
22 22 H 1.48494 * 109.47109 * 329.99811 * 19 17 15
23 23 C 1.38086 * 119.96281 * 90.00273 * 9 8 6
24 24 C 1.53779 * 113.61571 * 162.35869 * 3 2 1
25 25 C 1.53775 * 87.08084 * 220.01865 * 24 3 2
26 26 C 1.53774 * 87.08247 * 25.43439 * 25 24 3
27 27 H 1.09001 * 109.47052 * 295.04892 * 1 2 3
28 28 H 1.08998 * 109.47554 * 175.04339 * 1 2 3
29 29 H 1.09001 * 109.47060 * 55.04562 * 1 2 3
30 30 H 1.00904 * 110.99961 * 123.95021 * 2 1 3
31 31 H 1.08995 * 109.47263 * 72.16255 * 4 3 2
32 32 H 1.09002 * 109.47233 * 192.16371 * 4 3 2
33 33 H 0.96999 * 120.00151 * 354.97449 * 5 4 3
34 34 H 1.08997 * 109.47113 * 300.00231 * 8 6 5
35 35 H 1.08994 * 109.46854 * 60.00369 * 8 6 5
36 36 H 1.08003 * 119.93092 * 0.02562 * 10 9 8
37 37 H 1.07999 * 119.96477 * 180.25557 * 11 10 9
38 38 H 1.08007 * 120.03215 * 179.77381 * 12 11 10
39 39 H 0.97000 * 120.00171 * 180.02562 * 18 17 15
40 40 H 1.07994 * 120.03338 * 359.95363 * 23 9 8
41 41 H 1.09006 * 113.61289 * 334.56535 * 24 3 2
42 42 H 1.09001 * 113.61462 * 105.46250 * 24 3 2
43 43 H 1.08999 * 113.61008 * 270.88076 * 25 24 3
44 44 H 1.09004 * 113.61146 * 139.98172 * 25 24 3
45 45 H 1.08999 * 113.61389 * 220.02381 * 26 25 24
46 46 H 1.08995 * 113.61926 * 89.11848 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6800 2.1289 -1.2914
5 7 2.0137 1.2887 -2.4442
6 6 1.7246 1.7100 -3.6914
7 8 1.1886 2.7850 -3.8593
8 6 2.0683 0.8461 -4.8773
9 6 1.6433 1.5410 -6.1451
10 6 0.3761 1.3293 -6.6576
11 6 -0.0192 1.9689 -7.8182
12 6 0.8544 2.8134 -8.4749
13 6 2.1289 3.0241 -7.9658
14 8 2.9899 3.8531 -8.6093
15 6 2.5082 4.5332 -9.6691
16 1 1.4591 4.4721 -9.9184
17 6 3.3594 5.3111 -10.4390
18 7 4.6375 5.3851 -10.1357
19 14 2.6920 6.2527 -11.9077
20 1 2.2545 7.6034 -11.4725
21 1 3.7552 6.3842 -12.9361
22 1 1.5358 5.5191 -12.4822
23 6 2.5213 2.3842 -6.7971
24 6 3.4698 1.4654 0.4270
25 6 3.0823 2.7348 1.2036
26 6 1.6574 2.1611 1.2756
27 1 -0.3633 0.4351 0.9310
28 1 -0.3634 -1.0238 -0.0888
29 1 -0.3633 0.5888 -0.8423
30 1 1.8305 -0.5261 0.7814
31 1 0.6189 2.3767 -1.3173
32 1 2.2682 3.0459 -1.3277
33 1 2.4427 0.4292 -2.3100
34 1 3.1441 0.6726 -4.9008
35 1 1.5481 -0.1081 -4.7946
36 1 -0.3074 0.6662 -6.1481
37 1 -1.0107 1.8047 -8.2136
38 1 0.5462 3.3099 -9.3833
39 1 5.2330 5.9296 -10.6740
40 1 3.5118 2.5462 -6.3984
41 1 3.7923 0.6437 1.0665
42 1 4.1533 1.6517 -0.4014
43 1 3.1562 3.6477 0.6126
44 1 3.5692 2.8179 2.1753
45 1 0.8778 2.9091 1.1322
46 1 1.4844 1.5297 2.1470
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000863922332.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:39
Heat of formation + Delta-G solvation = -17.835290 kcal
Electronic energy + Delta-G solvation = -26003.379542 eV
Core-core repulsion = 22280.260515 eV
Total energy + Delta-G solvation = -3723.119027 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.54834 -39.37798 -38.54077 -36.37931 -34.44222 -33.89724 -32.31371 -31.88913
-29.18871 -28.26376 -26.66779 -26.32438 -25.42145 -25.04217 -22.62192 -21.57793
-21.06519 -20.09102 -19.16230 -17.57762 -16.99145 -16.81691 -16.71690 -16.05322
-15.36132 -15.17364 -14.87352 -14.79062 -14.37114 -14.28637 -14.08896 -13.59725
-13.46495 -13.34357 -13.24469 -12.91438 -12.68726 -12.46134 -12.32825 -12.17245
-11.84800 -11.68475 -11.41923 -11.34530 -11.19462 -11.01345 -10.74529 -10.69277
-10.65355 -10.51545 -10.37638 -9.61836 -9.27472 -8.94689 -8.81153 -8.75031
-7.95340 -7.11668 -6.36354 -3.94896 2.20565 2.49721 2.92143 3.17800
3.18878 3.23762 3.25844 3.82089 4.03976 4.08529 4.22212 4.26601
4.42406 4.66442 4.99479 5.04625 5.06432 5.14993 5.18008 5.21032
5.25226 5.28899 5.36110 5.42985 5.52926 5.54862 5.60643 5.61899
5.69136 5.73086 5.79106 5.86462 5.90066 6.04026 6.28677 6.44381
6.44886 6.63468 6.76630 6.94240 7.02435 7.17232 7.37725 7.46566
7.53685 7.68161 7.93904 8.09200 8.48280 9.09675 9.81714 10.82196
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.021783 B = 0.002405 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.082189 B =11639.747655 C =12404.711189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.677 5.677
3 C 0.081 3.919
4 C 0.152 3.848
5 N -0.724 5.724
6 C 0.512 3.488
7 O -0.526 6.526
8 C -0.093 4.093
9 C -0.031 4.031
10 C -0.196 4.196
11 C -0.075 4.075
12 C -0.231 4.231
13 C 0.154 3.846
14 O -0.181 6.181
15 C -0.389 4.389
16 H 0.091 0.909
17 C 0.038 3.962
18 N -0.866 5.866
19 Si 0.940 3.060
20 H -0.274 1.274
21 H -0.278 1.278
22 H -0.268 1.268
23 C -0.174 4.174
24 C -0.131 4.131
25 C -0.141 4.141
26 C -0.165 4.165
27 H 0.023 0.977
28 H 0.067 0.933
29 H 0.068 0.932
30 H 0.344 0.656
31 H 0.066 0.934
32 H 0.071 0.929
33 H 0.406 0.594
34 H 0.098 0.902
35 H 0.097 0.903
36 H 0.102 0.898
37 H 0.106 0.894
38 H 0.126 0.874
39 H 0.269 0.731
40 H 0.113 0.887
41 H 0.084 0.916
42 H 0.077 0.923
43 H 0.086 0.914
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.967 -11.788 22.193 25.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.307 5.307
3 C -0.011 4.011
4 C 0.028 3.972
5 N -0.378 5.378
6 C 0.298 3.702
7 O -0.400 6.400
8 C -0.133 4.133
9 C -0.032 4.032
10 C -0.215 4.215
11 C -0.094 4.094
12 C -0.251 4.251
13 C 0.101 3.899
14 O -0.084 6.084
15 C -0.465 4.465
16 H 0.108 0.892
17 C -0.166 4.166
18 N -0.501 5.501
19 Si 0.765 3.235
20 H -0.199 1.199
21 H -0.203 1.203
22 H -0.193 1.193
23 C -0.194 4.194
24 C -0.169 4.169
25 C -0.179 4.179
26 C -0.205 4.205
27 H 0.041 0.959
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.162 0.838
31 H 0.085 0.915
32 H 0.089 0.911
33 H 0.241 0.759
34 H 0.116 0.884
35 H 0.115 0.885
36 H 0.120 0.880
37 H 0.124 0.876
38 H 0.143 0.857
39 H 0.078 0.922
40 H 0.131 0.869
41 H 0.103 0.897
42 H 0.096 0.904
43 H 0.104 0.896
44 H 0.089 0.911
45 H 0.090 0.910
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.876 -10.906 21.307 24.428
hybrid contribution -0.452 0.345 0.344 0.665
sum -5.329 -10.561 21.651 24.672
Atomic orbital electron populations
1.22165 0.87400 1.02132 1.00532 1.60187 1.08177 1.12598 1.49733
1.22585 0.96111 0.88549 0.93836 1.20929 1.00909 0.92820 0.82584
1.45792 1.63895 1.23218 1.04941 1.20752 0.78391 0.87215 0.83822
1.90756 1.41327 1.22404 1.85543 1.20566 1.03309 0.98495 0.90884
1.18678 0.94049 0.96844 0.93591 1.20348 0.96040 1.05933 0.99205
1.20674 0.97961 0.95816 0.94923 1.21171 0.95216 1.05235 1.03448
1.19289 0.89536 0.89498 0.91562 1.83984 1.35330 1.48625 1.40511
1.21302 0.95033 1.24995 1.05182 0.89207 1.25267 0.95078 0.97559
0.98686 1.70045 1.03199 1.38121 1.38749 0.85726 0.78426 0.79572
0.79777 1.19942 1.20326 1.19252 1.19940 1.00505 1.02571 0.96347
1.23116 0.95244 0.98182 1.00353 1.22778 0.96206 0.97960 1.00928
1.23587 0.98163 1.00606 0.98172 0.95878 0.91410 0.91356 0.83799
0.91526 0.91118 0.75871 0.88359 0.88458 0.87990 0.87551 0.85670
0.92157 0.86867 0.89709 0.90446 0.89589 0.91107 0.91038 0.89975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 10.34 60.06 0.62 0.80 16
2 N -0.68 -4.38 6.13 -106.35 -0.65 -5.03 16
3 C 0.08 0.58 0.79 -130.79 -0.10 0.48 16
4 C 0.15 1.58 4.52 -4.04 -0.02 1.56 16
5 N -0.72 -8.03 5.38 -60.29 -0.32 -8.35 16
6 C 0.51 7.76 7.82 -10.99 -0.09 7.67 16
7 O -0.53 -10.62 16.03 5.55 0.09 -10.53 16
8 C -0.09 -1.30 5.83 -29.04 -0.17 -1.47 16
9 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16
10 C -0.20 -3.69 9.70 -39.53 -0.38 -4.08 16
11 C -0.08 -1.51 10.04 -39.61 -0.40 -1.90 16
12 C -0.23 -5.39 9.13 -39.40 -0.36 -5.75 16
13 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16
14 O -0.18 -5.40 9.76 0.07 0.00 -5.40 16
15 C -0.39 -11.32 9.44 30.89 0.29 -11.02 16
16 H 0.09 2.44 5.29 -52.48 -0.28 2.16 16
17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16
18 N -0.87 -26.14 13.67 55.48 0.76 -25.38 16
19 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16
20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
23 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16
24 C -0.13 -0.84 7.34 -25.92 -0.19 -1.03 16
25 C -0.14 -0.90 7.73 -25.93 -0.20 -1.10 16
26 C -0.17 -1.06 6.59 -25.92 -0.17 -1.23 16
27 H 0.02 0.14 7.63 -51.93 -0.40 -0.25 16
28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.07 0.59 6.84 -51.93 -0.36 0.23 16
30 H 0.34 1.73 8.61 -39.29 -0.34 1.39 16
31 H 0.07 0.78 7.34 -51.93 -0.38 0.40 16
32 H 0.07 0.80 7.35 -51.93 -0.38 0.42 16
33 H 0.41 3.65 8.09 -40.82 -0.33 3.32 16
34 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16
35 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16
36 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16
37 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16
38 H 0.13 2.90 5.71 -52.48 -0.30 2.60 16
39 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16
40 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16
41 H 0.08 0.45 7.99 -51.93 -0.42 0.03 16
42 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16
43 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16
44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16
46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
LS Contribution 379.09 15.07 5.71 5.71
Total: -1.00 -34.70 379.09 -8.72 -43.42
By element:
Atomic # 1 Polarization: 14.04 SS G_CDS: -6.93 Total: 7.12 kcal
Atomic # 6 Polarization: -15.41 SS G_CDS: -2.36 Total: -17.77 kcal
Atomic # 7 Polarization: -38.54 SS G_CDS: -0.22 Total: -38.76 kcal
Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.93 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -34.70 -8.72 -43.42 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000863922332.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.586 kcal
(2) G-P(sol) polarization free energy of solvation -34.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds