Wall clock time and date at job start Tue Mar 31 2020 12:59:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46906 * 111.00108 * 2 1
4 4 C 1.52997 * 112.84798 * 293.66524 * 3 2 1
5 5 N 1.46507 * 109.47004 * 312.16187 * 4 3 2
6 6 C 1.34775 * 120.00028 * 174.97515 * 5 4 3
7 7 O 1.21288 * 119.99934 * 0.02562 * 6 5 4
8 8 C 1.50700 * 120.00249 * 179.97438 * 6 5 4
9 9 C 1.50697 * 109.47174 * 179.97438 * 8 6 5
10 10 C 1.38317 * 119.96801 * 269.72653 * 9 8 6
11 11 C 1.38286 * 120.13722 * 179.76829 * 10 9 8
12 12 C 1.38119 * 120.06749 * 0.50889 * 11 10 9
13 13 C 1.38852 * 119.93442 * 359.74401 * 12 11 10
14 14 O 1.35748 * 120.07216 * 179.97438 * 13 12 11
15 15 C 1.34826 * 117.00019 * 5.76652 * 14 13 12
16 16 H 1.08004 * 120.00109 * 5.35378 * 15 14 13
17 17 C 1.38656 * 120.00413 * 185.35682 * 15 14 13
18 18 N 1.31562 * 119.99784 * 0.02562 * 17 15 14
19 19 Si 1.86796 * 120.00308 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47274 * 89.99821 * 19 17 15
21 21 H 1.48502 * 109.47137 * 210.00026 * 19 17 15
22 22 H 1.48494 * 109.47109 * 329.99811 * 19 17 15
23 23 C 1.38086 * 119.96281 * 90.00273 * 9 8 6
24 24 C 1.53779 * 113.61571 * 162.35869 * 3 2 1
25 25 C 1.53775 * 87.08084 * 220.01865 * 24 3 2
26 26 C 1.53774 * 87.08247 * 25.43439 * 25 24 3
27 27 H 1.09001 * 109.47052 * 295.04892 * 1 2 3
28 28 H 1.08998 * 109.47554 * 175.04339 * 1 2 3
29 29 H 1.09001 * 109.47060 * 55.04562 * 1 2 3
30 30 H 1.00904 * 110.99961 * 123.95021 * 2 1 3
31 31 H 1.08995 * 109.47263 * 72.16255 * 4 3 2
32 32 H 1.09002 * 109.47233 * 192.16371 * 4 3 2
33 33 H 0.96999 * 120.00151 * 354.97449 * 5 4 3
34 34 H 1.08997 * 109.47113 * 300.00231 * 8 6 5
35 35 H 1.08994 * 109.46854 * 60.00369 * 8 6 5
36 36 H 1.08003 * 119.93092 * 0.02562 * 10 9 8
37 37 H 1.07999 * 119.96477 * 180.25557 * 11 10 9
38 38 H 1.08007 * 120.03215 * 179.77381 * 12 11 10
39 39 H 0.97000 * 120.00171 * 180.02562 * 18 17 15
40 40 H 1.07994 * 120.03338 * 359.95363 * 23 9 8
41 41 H 1.09006 * 113.61289 * 334.56535 * 24 3 2
42 42 H 1.09001 * 113.61462 * 105.46250 * 24 3 2
43 43 H 1.08999 * 113.61008 * 270.88076 * 25 24 3
44 44 H 1.09004 * 113.61146 * 139.98172 * 25 24 3
45 45 H 1.08999 * 113.61389 * 220.02381 * 26 25 24
46 46 H 1.08995 * 113.61926 * 89.11848 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6800 2.1289 -1.2914
5 7 2.0137 1.2887 -2.4442
6 6 1.7246 1.7100 -3.6914
7 8 1.1886 2.7850 -3.8593
8 6 2.0683 0.8461 -4.8773
9 6 1.6433 1.5410 -6.1451
10 6 0.3761 1.3293 -6.6576
11 6 -0.0192 1.9689 -7.8182
12 6 0.8544 2.8134 -8.4749
13 6 2.1289 3.0241 -7.9658
14 8 2.9899 3.8531 -8.6093
15 6 2.5082 4.5332 -9.6691
16 1 1.4591 4.4721 -9.9184
17 6 3.3594 5.3111 -10.4390
18 7 4.6375 5.3851 -10.1357
19 14 2.6920 6.2527 -11.9077
20 1 2.2545 7.6034 -11.4725
21 1 3.7552 6.3842 -12.9361
22 1 1.5358 5.5191 -12.4822
23 6 2.5213 2.3842 -6.7971
24 6 3.4698 1.4654 0.4270
25 6 3.0823 2.7348 1.2036
26 6 1.6574 2.1611 1.2756
27 1 -0.3633 0.4351 0.9310
28 1 -0.3634 -1.0238 -0.0888
29 1 -0.3633 0.5888 -0.8423
30 1 1.8305 -0.5261 0.7814
31 1 0.6189 2.3767 -1.3173
32 1 2.2682 3.0459 -1.3277
33 1 2.4427 0.4292 -2.3100
34 1 3.1441 0.6726 -4.9008
35 1 1.5481 -0.1081 -4.7946
36 1 -0.3074 0.6662 -6.1481
37 1 -1.0107 1.8047 -8.2136
38 1 0.5462 3.3099 -9.3833
39 1 5.2330 5.9296 -10.6740
40 1 3.5118 2.5462 -6.3984
41 1 3.7923 0.6437 1.0665
42 1 4.1533 1.6517 -0.4014
43 1 3.1562 3.6477 0.6126
44 1 3.5692 2.8179 2.1753
45 1 0.8778 2.9091 1.1322
46 1 1.4844 1.5297 2.1470
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000863922332.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:39
Heat of formation + Delta-G solvation = -43.006386 kcal
Electronic energy + Delta-G solvation = -26004.471043 eV
Core-core repulsion = 22280.260515 eV
Total energy + Delta-G solvation = -3724.210528 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.37548 -40.79990 -40.00110 -38.16035 -35.34865 -34.61829 -34.33677 -33.43773
-30.91418 -29.47861 -27.71362 -27.18291 -26.97853 -25.97290 -23.36922 -23.17364
-22.64297 -21.36303 -19.95658 -19.41430 -18.73404 -17.85551 -17.56664 -16.91651
-16.78616 -16.55469 -16.12808 -16.01391 -15.87358 -15.48625 -15.32854 -14.93145
-14.67162 -14.53791 -14.38843 -14.09638 -13.96803 -13.67621 -13.56758 -13.23451
-12.96514 -12.78636 -12.73400 -12.45849 -12.40436 -12.36427 -12.21165 -12.09832
-11.89956 -11.57497 -11.23546 -11.22494 -10.93449 -10.78147 -10.01134 -9.62427
-9.33520 -8.96719 -8.46910 -6.15219 0.53700 0.76900 1.33717 1.43822
1.51792 1.72682 2.17449 2.24758 2.85450 3.16690 3.26058 3.45116
3.49741 3.62253 3.66800 3.84490 3.89332 4.11648 4.19782 4.33834
4.43482 4.45604 4.51254 4.56163 4.59972 4.67068 4.67552 4.68383
4.75083 4.77429 4.82489 5.02353 5.07676 5.08159 5.10255 5.13256
5.15491 5.32104 5.37237 5.51397 5.66149 5.74124 5.76978 6.00844
6.03184 6.24908 6.51334 6.68578 6.97663 7.37610 7.79665 8.76880
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.021783 B = 0.002405 C = 0.002257
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.082189 B =11639.747655 C =12404.711189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.676 5.676
3 C 0.085 3.915
4 C 0.151 3.849
5 N -0.701 5.701
6 C 0.512 3.488
7 O -0.585 6.585
8 C -0.090 4.090
9 C -0.024 4.024
10 C -0.181 4.181
11 C -0.074 4.074
12 C -0.247 4.247
13 C 0.112 3.888
14 O -0.234 6.234
15 C -0.414 4.414
16 H 0.098 0.902
17 C -0.024 4.024
18 N -0.922 5.922
19 Si 1.020 2.980
20 H -0.265 1.265
21 H -0.268 1.268
22 H -0.252 1.252
23 C -0.193 4.193
24 C -0.125 4.125
25 C -0.143 4.143
26 C -0.159 4.159
27 H 0.028 0.972
28 H 0.078 0.922
29 H 0.046 0.954
30 H 0.357 0.643
31 H 0.051 0.949
32 H 0.056 0.944
33 H 0.420 0.580
34 H 0.120 0.880
35 H 0.141 0.859
36 H 0.146 0.854
37 H 0.145 0.855
38 H 0.117 0.883
39 H 0.273 0.727
40 H 0.106 0.894
41 H 0.104 0.896
42 H 0.066 0.934
43 H 0.072 0.928
44 H 0.083 0.917
45 H 0.061 0.939
46 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.713 -14.382 23.914 28.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.307 5.307
3 C -0.007 4.007
4 C 0.026 3.974
5 N -0.354 5.354
6 C 0.299 3.701
7 O -0.465 6.465
8 C -0.129 4.129
9 C -0.025 4.025
10 C -0.199 4.199
11 C -0.092 4.092
12 C -0.267 4.267
13 C 0.062 3.938
14 O -0.141 6.141
15 C -0.490 4.490
16 H 0.116 0.884
17 C -0.221 4.221
18 N -0.561 5.561
19 Si 0.839 3.161
20 H -0.190 1.190
21 H -0.193 1.193
22 H -0.176 1.176
23 C -0.212 4.212
24 C -0.162 4.162
25 C -0.181 4.181
26 C -0.199 4.199
27 H 0.047 0.953
28 H 0.097 0.903
29 H 0.065 0.935
30 H 0.177 0.823
31 H 0.070 0.930
32 H 0.074 0.926
33 H 0.258 0.742
34 H 0.138 0.862
35 H 0.159 0.841
36 H 0.164 0.836
37 H 0.163 0.837
38 H 0.135 0.865
39 H 0.082 0.918
40 H 0.124 0.876
41 H 0.123 0.877
42 H 0.085 0.915
43 H 0.090 0.910
44 H 0.101 0.899
45 H 0.079 0.921
46 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -6.632 -13.586 23.100 27.607
hybrid contribution -0.033 0.934 0.083 0.938
sum -6.665 -12.652 23.183 27.239
Atomic orbital electron populations
1.22122 0.87507 1.02425 0.99920 1.60139 1.08070 1.11938 1.50575
1.22394 0.96994 0.88918 0.92371 1.20947 0.99730 0.92908 0.83823
1.45603 1.62274 1.23516 1.04034 1.20922 0.77662 0.86419 0.85082
1.90748 1.44444 1.24874 1.86415 1.20671 1.05329 0.99221 0.87668
1.19204 0.93516 0.95067 0.94720 1.20967 0.96163 1.04677 0.98123
1.21130 0.98918 0.94238 0.94887 1.21296 0.95059 1.06462 1.03848
1.19880 0.90562 0.90540 0.92838 1.83938 1.37302 1.50963 1.41921
1.21802 0.95825 1.25805 1.05538 0.88418 1.26614 0.95279 0.98337
1.01909 1.70191 1.04962 1.40053 1.40864 0.84577 0.78270 0.77952
0.75317 1.18971 1.19260 1.17601 1.20213 1.01302 1.03610 0.96072
1.23117 0.94180 0.98723 1.00226 1.22777 0.96439 0.97526 1.01383
1.23578 0.97791 1.00399 0.98157 0.95295 0.90313 0.93484 0.82304
0.93029 0.92582 0.74181 0.86177 0.84081 0.83603 0.83707 0.86482
0.91831 0.87590 0.87716 0.91501 0.90973 0.89872 0.92055 0.88300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 10.34 127.69 1.32 1.65 16
2 N -0.68 -6.78 6.13 -490.39 -3.01 -9.79 16
3 C 0.09 1.07 0.79 4.05 0.00 1.07 16
4 C 0.15 3.03 4.52 86.38 0.39 3.42 16
5 N -0.70 -14.28 5.38 -463.05 -2.49 -16.77 16
6 C 0.51 14.72 7.82 87.66 0.69 15.40 16
7 O -0.59 -23.68 16.03 -3.05 -0.05 -23.73 16
8 C -0.09 -2.24 5.83 29.10 0.17 -2.07 16
9 C -0.02 -0.89 4.37 -19.88 -0.09 -0.98 16
10 C -0.18 -6.21 9.70 22.30 0.22 -6.00 16
11 C -0.07 -2.79 10.04 22.25 0.22 -2.57 16
12 C -0.25 -11.77 9.13 22.39 0.20 -11.56 16
13 C 0.11 6.04 6.65 22.58 0.15 6.19 16
14 O -0.23 -15.01 9.76 -22.67 -0.22 -15.23 16
15 C -0.41 -25.45 9.44 67.92 0.64 -24.81 16
16 H 0.10 5.57 5.29 -2.91 -0.02 5.56 16
17 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16
18 N -0.92 -58.71 13.67 21.61 0.30 -58.41 16
19 Si 1.02 44.74 29.55 68.60 2.03 46.77 16
20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16
21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16
22 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16
23 C -0.19 -8.99 9.65 22.39 0.22 -8.78 16
24 C -0.12 -1.33 7.34 31.12 0.23 -1.10 16
25 C -0.14 -1.63 7.73 31.12 0.24 -1.39 16
26 C -0.16 -1.76 6.59 31.12 0.21 -1.55 16
27 H 0.03 0.29 7.63 -2.39 -0.02 0.27 16
28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
29 H 0.05 0.73 6.84 -2.39 -0.02 0.71 16
30 H 0.36 2.27 8.61 -89.69 -0.77 1.50 16
31 H 0.05 1.22 7.34 -2.39 -0.02 1.20 16
32 H 0.06 1.31 7.35 -2.39 -0.02 1.29 16
33 H 0.42 6.27 8.09 -92.71 -0.75 5.52 16
34 H 0.12 2.54 8.08 -2.39 -0.02 2.52 16
35 H 0.14 2.35 8.08 -2.39 -0.02 2.33 16
36 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16
37 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16
38 H 0.12 5.62 5.71 -2.91 -0.02 5.60 16
39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16
40 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16
41 H 0.10 0.74 7.99 -2.38 -0.02 0.72 16
42 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16
43 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16
44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
45 H 0.06 0.81 8.10 -2.39 -0.02 0.80 16
46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
Total: -1.00 -82.80 379.09 1.31 -81.49
By element:
Atomic # 1 Polarization: 30.22 SS G_CDS: -0.52 Total: 29.70 kcal
Atomic # 6 Polarization: -39.31 SS G_CDS: 5.27 Total: -34.04 kcal
Atomic # 7 Polarization: -79.76 SS G_CDS: -5.20 Total: -84.97 kcal
Atomic # 8 Polarization: -38.69 SS G_CDS: -0.27 Total: -38.96 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -82.80 1.31 -81.49 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000863922332.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.487 kcal
(2) G-P(sol) polarization free energy of solvation -82.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.318 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds