Wall clock time and date at job start Tue Mar 31 2020 12:20:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42902 * 109.47020 * 2 1
4 4 C 1.42895 * 114.00060 * 175.91180 * 3 2 1
5 5 H 1.09000 * 109.47404 * 27.61246 * 4 3 2
6 6 C 1.50691 * 109.47438 * 147.61901 * 4 3 2
7 7 O 1.21272 * 120.00149 * 44.62253 * 6 4 3
8 8 N 1.34777 * 119.99907 * 224.62944 * 6 4 3
9 9 C 1.37219 * 120.00141 * 204.85641 * 8 6 4
10 10 H 1.07993 * 120.00059 * 196.54813 * 9 8 6
11 11 C 1.38894 * 119.99631 * 16.55327 * 9 8 6
12 12 N 1.31419 * 119.99957 * 6.33871 * 11 9 8
13 13 Si 1.86798 * 119.99821 * 186.34389 * 11 9 8
14 14 H 1.48493 * 109.47171 * 4.99763 * 13 11 9
15 15 H 1.48502 * 109.47189 * 125.00240 * 13 11 9
16 16 H 1.48501 * 109.46992 * 244.99798 * 13 11 9
17 17 C 1.39428 * 120.00214 * 24.85878 * 8 6 4
18 18 C 1.39068 * 119.69523 * 292.86766 * 17 8 6
19 19 C 1.38386 * 119.09707 * 179.76922 * 18 17 8
20 20 C 1.38829 * 118.49093 * 0.45122 * 19 18 17
21 21 C 1.38146 * 119.31109 * 359.52326 * 20 19 18
22 22 N 1.31877 * 120.85333 * 0.25961 * 21 20 19
23 23 C 1.53003 * 109.47143 * 267.61781 * 4 3 2
24 24 C 1.54272 * 110.03523 * 80.41599 * 23 4 3
25 25 C 1.54883 * 104.19525 * 217.10984 * 24 23 4
26 26 C 1.54881 * 102.75052 * 37.94314 * 25 24 23
27 27 C 1.53873 * 110.02929 * 323.25235 * 23 4 3
28 28 H 1.09003 * 109.47093 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47744 * 300.00205 * 1 2 3
30 30 H 1.08995 * 109.47142 * 60.00664 * 1 2 3
31 31 H 1.08997 * 109.47069 * 239.99471 * 2 1 3
32 32 H 1.09004 * 109.46992 * 119.99933 * 2 1 3
33 33 H 0.97000 * 119.99352 * 184.91909 * 12 11 9
34 34 H 1.07995 * 120.44782 * 359.97438 * 18 17 8
35 35 H 1.07991 * 120.75037 * 180.23162 * 19 18 17
36 36 H 1.07999 * 120.34089 * 179.80801 * 20 19 18
37 37 H 1.07994 * 119.57265 * 180.22815 * 21 20 19
38 38 H 1.09000 * 110.01803 * 201.86041 * 23 4 3
39 39 H 1.09003 * 110.48008 * 335.78909 * 24 23 4
40 40 H 1.09001 * 110.48350 * 98.42481 * 24 23 4
41 41 H 1.09002 * 110.75348 * 279.62353 * 25 24 23
42 42 H 1.09001 * 110.91122 * 156.33273 * 25 24 23
43 43 H 1.09008 * 110.48217 * 203.37629 * 26 25 24
44 44 H 1.09000 * 110.60144 * 80.79653 * 26 25 24
45 45 H 1.09006 * 110.03462 * 238.56797 * 27 23 4
46 46 H 1.09001 * 110.03517 * 0.02562 * 27 23 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4276 1.4613 0.0931
5 1 3.8922 0.5715 -0.3320
6 6 3.8849 2.6789 -0.6679
7 8 3.2878 3.7277 -0.5493
8 7 4.9574 2.6023 -1.4805
9 6 5.6834 3.7309 -1.7668
10 1 6.3629 3.7375 -2.6061
11 6 5.5444 4.8649 -0.9769
12 7 4.8149 4.8195 0.1153
13 14 6.3943 6.4545 -1.4670
14 1 7.0487 6.2788 -2.7883
15 1 5.3912 7.5461 -1.5525
16 1 7.4187 6.8022 -0.4496
17 6 5.3294 1.3761 -2.0303
18 6 5.8067 0.3661 -1.2021
19 6 6.1678 -0.8476 -1.7603
20 6 6.0474 -1.0066 -3.1342
21 6 5.5651 0.0398 -3.8964
22 7 5.2245 1.1839 -3.3360
23 6 3.8334 1.5960 1.5621
24 6 3.8490 0.2081 2.2355
25 6 3.3164 0.4737 3.6655
26 6 2.2153 1.5367 3.4281
27 6 2.7947 2.4407 2.3205
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 4.6591 5.6279 0.6284
34 1 5.8913 0.5257 -0.1373
35 1 6.5381 -1.6515 -1.1416
36 1 6.3236 -1.9402 -3.6016
37 1 5.4663 -0.0806 -4.9650
38 1 4.8174 2.0589 1.6365
39 1 3.1912 -0.4806 1.7052
40 1 4.8646 -0.1860 2.2736
41 1 4.1056 0.8707 4.3040
42 1 2.8917 -0.4327 4.0970
43 1 2.0386 2.1123 4.3369
44 1 1.2924 1.0644 3.0914
45 1 3.2747 3.3133 2.7637
46 1 2.0013 2.7544 1.6420
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000892473578.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:37
Heat of formation + Delta-G solvation = -2.147799 kcal
Electronic energy + Delta-G solvation = -29010.576812 eV
Core-core repulsion = 25288.138046 eV
Total energy + Delta-G solvation = -3722.438767 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.19686 -38.97906 -37.37641 -36.11746 -34.04406 -32.23634 -32.01446 -31.16362
-29.27469 -29.17720 -28.19554 -25.78393 -24.18941 -23.01688 -22.56123 -22.28371
-20.28439 -19.89773 -19.06114 -17.55836 -16.63071 -16.21027 -15.97095 -15.89872
-15.41242 -14.88416 -14.59068 -14.34897 -14.03398 -13.88517 -13.35108 -13.15724
-13.00864 -12.85455 -12.81157 -12.47431 -12.29560 -11.91388 -11.55610 -11.39396
-11.24383 -11.08697 -11.00622 -10.77242 -10.71669 -10.50824 -10.45808 -10.38805
-10.12053 -9.97493 -9.76212 -9.68703 -9.39083 -9.09147 -8.90930 -8.63028
-7.75501 -7.15388 -5.67812 -3.87238 1.55562 1.72547 3.32987 3.37975
3.41306 3.85296 4.22828 4.27942 4.52022 4.65789 5.03760 5.05513
5.08708 5.16221 5.20521 5.33114 5.34917 5.42621 5.46194 5.53601
5.57796 5.68834 5.73817 5.82379 5.87478 5.97908 5.98812 6.05689
6.07349 6.14422 6.18135 6.18635 6.25106 6.29210 6.33869 6.48738
6.51465 6.55960 6.59801 6.82373 7.04669 7.08317 7.22249 7.50758
7.75797 8.13126 8.52588 8.93103 9.15104 9.60430 10.27984 10.92616
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.009740 B = 0.007019 C = 0.005006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2873.975710 B = 3988.153634 C = 5591.733722
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.048 3.952
3 O -0.358 6.358
4 C 0.088 3.912
5 H 0.060 0.940
6 C 0.429 3.571
7 O -0.429 6.429
8 N -0.420 5.420
9 C -0.288 4.288
10 H 0.091 0.909
11 C -0.001 4.001
12 N -0.777 5.777
13 Si 0.927 3.073
14 H -0.274 1.274
15 H -0.284 1.284
16 H -0.286 1.286
17 C 0.379 3.621
18 C -0.187 4.187
19 C -0.069 4.069
20 C -0.209 4.209
21 C 0.114 3.886
22 N -0.495 5.495
23 C -0.091 4.091
24 C -0.131 4.131
25 C -0.121 4.121
26 C -0.123 4.123
27 C -0.101 4.101
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.061 0.939
31 H 0.038 0.962
32 H 0.052 0.948
33 H 0.258 0.742
34 H 0.133 0.867
35 H 0.128 0.872
36 H 0.127 0.873
37 H 0.149 0.851
38 H 0.084 0.916
39 H 0.066 0.934
40 H 0.060 0.940
41 H 0.063 0.937
42 H 0.057 0.943
43 H 0.055 0.945
44 H 0.058 0.942
45 H 0.058 0.942
46 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.259 -13.881 2.979 14.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.029 4.029
3 O -0.276 6.276
4 C 0.027 3.973
5 H 0.078 0.922
6 C 0.217 3.783
7 O -0.295 6.295
8 N -0.140 5.140
9 C -0.414 4.414
10 H 0.109 0.891
11 C -0.208 4.208
12 N -0.422 5.422
13 Si 0.755 3.245
14 H -0.199 1.199
15 H -0.210 1.210
16 H -0.212 1.212
17 C 0.151 3.849
18 C -0.210 4.210
19 C -0.095 4.095
20 C -0.230 4.230
21 C -0.045 4.045
22 N -0.208 5.208
23 C -0.111 4.111
24 C -0.168 4.168
25 C -0.159 4.159
26 C -0.161 4.161
27 C -0.138 4.138
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.056 0.944
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.151 0.849
35 H 0.146 0.854
36 H 0.145 0.855
37 H 0.166 0.834
38 H 0.102 0.898
39 H 0.084 0.916
40 H 0.078 0.922
41 H 0.082 0.918
42 H 0.075 0.925
43 H 0.074 0.926
44 H 0.077 0.923
45 H 0.077 0.923
46 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.142 -12.295 2.726 12.774
hybrid contribution 0.985 -0.225 0.230 1.036
sum -1.157 -12.520 2.956 12.916
Atomic orbital electron populations
1.21701 0.94314 1.01392 1.03065 1.22646 0.95272 0.85517 0.99454
1.88011 1.20850 1.24336 1.94430 1.22145 0.81522 0.98154 0.95483
0.92187 1.18640 0.84756 0.88670 0.86263 1.90455 1.47475 1.29103
1.62417 1.41084 1.25901 1.03740 1.43293 1.19461 1.19606 0.90416
1.11963 0.89109 1.24974 0.99459 0.99357 0.96979 1.70447 1.30173
1.28493 1.13048 0.85832 0.78607 0.81987 0.78085 1.19899 1.20987
1.21232 1.18758 0.90323 0.88099 0.87717 1.22243 1.02068 0.94951
1.01775 1.21386 0.96526 0.96599 0.95005 1.21930 1.05606 1.00672
0.94746 1.22534 0.94154 0.87988 0.99851 1.67494 1.16089 1.23829
1.13383 1.22028 1.00797 0.94759 0.93487 1.22742 1.00401 0.97545
0.96124 1.22444 0.98416 0.98416 0.96609 1.22382 0.97810 0.97182
0.98677 1.21878 0.98751 0.96999 0.96190 0.91792 0.91965 0.92020
0.94425 0.93029 0.93008 0.84883 0.85377 0.85517 0.83374 0.89769
0.91612 0.92166 0.91833 0.92467 0.92617 0.92334 0.92275 0.89782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.94 10.28 37.16 0.38 -1.56 16
2 C 0.05 0.75 6.32 37.16 0.23 0.99 16
3 O -0.36 -7.37 8.07 -49.50 -0.40 -7.77 16
4 C 0.09 1.86 1.56 -27.89 -0.04 1.81 16
5 H 0.06 1.18 4.27 -51.93 -0.22 0.96 16
6 C 0.43 11.27 5.31 -10.99 -0.06 11.21 16
7 O -0.43 -12.91 13.14 -8.70 -0.11 -13.02 16
8 N -0.42 -10.97 2.76 -60.71 -0.17 -11.13 16
9 C -0.29 -8.05 9.64 -14.90 -0.14 -8.20 16
10 H 0.09 2.51 7.84 -52.49 -0.41 2.10 16
11 C 0.00 -0.03 5.02 -17.49 -0.09 -0.11 16
12 N -0.78 -22.26 9.04 55.49 0.50 -21.76 16
13 Si 0.93 21.96 29.56 -169.99 -5.02 16.94 16
14 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16
15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
17 C 0.38 8.44 5.65 -154.64 -0.87 7.57 16
18 C -0.19 -3.39 7.54 -39.22 -0.30 -3.69 16
19 C -0.07 -0.98 10.17 -39.31 -0.40 -1.38 16
20 C -0.21 -2.81 10.11 -39.40 -0.40 -3.21 16
21 C 0.11 1.83 11.18 -17.57 -0.20 1.63 16
22 N -0.49 -10.55 10.39 -12.34 -0.13 -10.68 16
23 C -0.09 -1.73 2.72 -89.50 -0.24 -1.98 16
24 C -0.13 -1.92 6.19 -25.07 -0.16 -2.07 16
25 C -0.12 -1.62 6.91 -24.75 -0.17 -1.79 16
26 C -0.12 -1.83 6.83 -25.08 -0.17 -2.00 16
27 C -0.10 -1.92 5.96 -25.61 -0.15 -2.08 16
28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.05 0.73 5.08 -51.93 -0.26 0.46 16
33 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16
34 H 0.13 2.35 7.39 -52.49 -0.39 1.96 16
35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16
36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16
37 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16
38 H 0.08 1.81 7.97 -51.93 -0.41 1.39 16
39 H 0.07 0.92 4.72 -51.93 -0.25 0.67 16
40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16
44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
46 H 0.08 1.85 6.53 -51.93 -0.34 1.51 16
LS Contribution 363.36 15.07 5.48 5.48
Total: -1.00 -32.96 363.36 -9.54 -42.51
By element:
Atomic # 1 Polarization: 11.21 SS G_CDS: -6.91 Total: 4.30 kcal
Atomic # 6 Polarization: -2.09 SS G_CDS: -2.77 Total: -4.86 kcal
Atomic # 7 Polarization: -43.78 SS G_CDS: 0.21 Total: -43.57 kcal
Atomic # 8 Polarization: -20.27 SS G_CDS: -0.51 Total: -20.79 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.96 -9.54 -42.51 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892473578.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.357 kcal
(2) G-P(sol) polarization free energy of solvation -32.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds