Wall clock time and date at job start Tue Mar 31 2020 12:20:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42902 * 109.47020 * 2 1
4 4 C 1.42895 * 114.00060 * 175.91180 * 3 2 1
5 5 H 1.09000 * 109.47404 * 27.61246 * 4 3 2
6 6 C 1.50691 * 109.47438 * 147.61901 * 4 3 2
7 7 O 1.21272 * 120.00149 * 44.62253 * 6 4 3
8 8 N 1.34777 * 119.99907 * 224.62944 * 6 4 3
9 9 C 1.37219 * 120.00141 * 204.85641 * 8 6 4
10 10 H 1.07993 * 120.00059 * 196.54813 * 9 8 6
11 11 C 1.38894 * 119.99631 * 16.55327 * 9 8 6
12 12 N 1.31419 * 119.99957 * 6.33871 * 11 9 8
13 13 Si 1.86798 * 119.99821 * 186.34389 * 11 9 8
14 14 H 1.48493 * 109.47171 * 4.99763 * 13 11 9
15 15 H 1.48502 * 109.47189 * 125.00240 * 13 11 9
16 16 H 1.48501 * 109.46992 * 244.99798 * 13 11 9
17 17 C 1.39428 * 120.00214 * 24.85878 * 8 6 4
18 18 C 1.39068 * 119.69523 * 292.86766 * 17 8 6
19 19 C 1.38386 * 119.09707 * 179.76922 * 18 17 8
20 20 C 1.38829 * 118.49093 * 0.45122 * 19 18 17
21 21 C 1.38146 * 119.31109 * 359.52326 * 20 19 18
22 22 N 1.31877 * 120.85333 * 0.25961 * 21 20 19
23 23 C 1.53003 * 109.47143 * 267.61781 * 4 3 2
24 24 C 1.54272 * 110.03523 * 80.41599 * 23 4 3
25 25 C 1.54883 * 104.19525 * 217.10984 * 24 23 4
26 26 C 1.54881 * 102.75052 * 37.94314 * 25 24 23
27 27 C 1.53873 * 110.02929 * 323.25235 * 23 4 3
28 28 H 1.09003 * 109.47093 * 179.97438 * 1 2 3
29 29 H 1.08996 * 109.47744 * 300.00205 * 1 2 3
30 30 H 1.08995 * 109.47142 * 60.00664 * 1 2 3
31 31 H 1.08997 * 109.47069 * 239.99471 * 2 1 3
32 32 H 1.09004 * 109.46992 * 119.99933 * 2 1 3
33 33 H 0.97000 * 119.99352 * 184.91909 * 12 11 9
34 34 H 1.07995 * 120.44782 * 359.97438 * 18 17 8
35 35 H 1.07991 * 120.75037 * 180.23162 * 19 18 17
36 36 H 1.07999 * 120.34089 * 179.80801 * 20 19 18
37 37 H 1.07994 * 119.57265 * 180.22815 * 21 20 19
38 38 H 1.09000 * 110.01803 * 201.86041 * 23 4 3
39 39 H 1.09003 * 110.48008 * 335.78909 * 24 23 4
40 40 H 1.09001 * 110.48350 * 98.42481 * 24 23 4
41 41 H 1.09002 * 110.75348 * 279.62353 * 25 24 23
42 42 H 1.09001 * 110.91122 * 156.33273 * 25 24 23
43 43 H 1.09008 * 110.48217 * 203.37629 * 26 25 24
44 44 H 1.09000 * 110.60144 * 80.79653 * 26 25 24
45 45 H 1.09006 * 110.03462 * 238.56797 * 27 23 4
46 46 H 1.09001 * 110.03517 * 0.02562 * 27 23 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4276 1.4613 0.0931
5 1 3.8922 0.5715 -0.3320
6 6 3.8849 2.6789 -0.6679
7 8 3.2878 3.7277 -0.5493
8 7 4.9574 2.6023 -1.4805
9 6 5.6834 3.7309 -1.7668
10 1 6.3629 3.7375 -2.6061
11 6 5.5444 4.8649 -0.9769
12 7 4.8149 4.8195 0.1153
13 14 6.3943 6.4545 -1.4670
14 1 7.0487 6.2788 -2.7883
15 1 5.3912 7.5461 -1.5525
16 1 7.4187 6.8022 -0.4496
17 6 5.3294 1.3761 -2.0303
18 6 5.8067 0.3661 -1.2021
19 6 6.1678 -0.8476 -1.7603
20 6 6.0474 -1.0066 -3.1342
21 6 5.5651 0.0398 -3.8964
22 7 5.2245 1.1839 -3.3360
23 6 3.8334 1.5960 1.5621
24 6 3.8490 0.2081 2.2355
25 6 3.3164 0.4737 3.6655
26 6 2.2153 1.5367 3.4281
27 6 2.7947 2.4407 2.3205
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 4.6591 5.6279 0.6284
34 1 5.8913 0.5257 -0.1373
35 1 6.5381 -1.6515 -1.1416
36 1 6.3236 -1.9402 -3.6016
37 1 5.4663 -0.0806 -4.9650
38 1 4.8174 2.0589 1.6365
39 1 3.1912 -0.4806 1.7052
40 1 4.8646 -0.1860 2.2736
41 1 4.1056 0.8707 4.3040
42 1 2.8917 -0.4327 4.0970
43 1 2.0386 2.1123 4.3369
44 1 1.2924 1.0644 3.0914
45 1 3.2747 3.3133 2.7637
46 1 2.0013 2.7544 1.6420
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892473578.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:36
Heat of formation + Delta-G solvation = -22.015325 kcal
Electronic energy + Delta-G solvation = -29011.438333 eV
Core-core repulsion = 25288.138046 eV
Total energy + Delta-G solvation = -3723.300287 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.75569 -40.42241 -39.08707 -37.48582 -35.90907 -34.11805 -33.38537 -32.52545
-30.76817 -30.56937 -29.49699 -27.57046 -25.89515 -24.30946 -23.97297 -23.61528
-21.72107 -21.37752 -20.57727 -19.25264 -18.38831 -17.72738 -17.41055 -17.23594
-16.83356 -16.52685 -16.08855 -15.84304 -15.64943 -15.35858 -14.96938 -14.55995
-14.49360 -14.27615 -14.04313 -13.91996 -13.65286 -13.30595 -13.08681 -12.96965
-12.81110 -12.70738 -12.46305 -12.35161 -12.13982 -11.96081 -11.90417 -11.86077
-11.75589 -11.56411 -11.31280 -11.25922 -10.73944 -10.69738 -10.36283 -10.13230
-9.44757 -9.15718 -7.74953 -5.99495 0.21537 0.46777 1.37070 1.41802
1.50922 2.19733 2.41673 2.69592 2.94501 3.13019 3.22486 3.69437
3.78025 3.84353 3.92156 4.03253 4.11823 4.14593 4.20351 4.32179
4.36295 4.36502 4.40892 4.49587 4.65133 4.68082 4.70912 4.81587
4.87479 4.89556 4.91590 5.00031 5.04608 5.14243 5.18204 5.23581
5.24912 5.30390 5.32085 5.34762 5.53039 5.55840 5.64606 5.82567
6.04808 6.36217 6.85374 7.12902 7.19200 7.69758 8.35092 8.82752
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.009740 B = 0.007019 C = 0.005006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2873.975710 B = 3988.153634 C = 5591.733722
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.039 3.961
3 O -0.388 6.388
4 C 0.105 3.895
5 H 0.076 0.924
6 C 0.420 3.580
7 O -0.492 6.492
8 N -0.437 5.437
9 C -0.311 4.311
10 H 0.081 0.919
11 C -0.052 4.052
12 N -0.799 5.799
13 Si 0.988 3.012
14 H -0.266 1.266
15 H -0.292 1.292
16 H -0.273 1.273
17 C 0.332 3.668
18 C -0.192 4.192
19 C -0.054 4.054
20 C -0.177 4.177
21 C 0.100 3.900
22 N -0.542 5.542
23 C -0.088 4.088
24 C -0.121 4.121
25 C -0.113 4.113
26 C -0.115 4.115
27 C -0.099 4.099
28 H 0.101 0.899
29 H 0.060 0.940
30 H 0.045 0.955
31 H 0.040 0.960
32 H 0.075 0.925
33 H 0.249 0.751
34 H 0.130 0.870
35 H 0.179 0.821
36 H 0.181 0.819
37 H 0.180 0.820
38 H 0.046 0.954
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.066 0.934
42 H 0.092 0.908
43 H 0.066 0.934
44 H 0.069 0.931
45 H 0.027 0.973
46 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.451 -18.822 3.347 19.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.037 4.037
3 O -0.307 6.307
4 C 0.044 3.956
5 H 0.093 0.907
6 C 0.209 3.791
7 O -0.362 6.362
8 N -0.158 5.158
9 C -0.439 4.439
10 H 0.099 0.901
11 C -0.256 4.256
12 N -0.443 5.443
13 Si 0.814 3.186
14 H -0.191 1.191
15 H -0.218 1.218
16 H -0.199 1.199
17 C 0.107 3.893
18 C -0.215 4.215
19 C -0.080 4.080
20 C -0.197 4.197
21 C -0.059 4.059
22 N -0.256 5.256
23 C -0.107 4.107
24 C -0.158 4.158
25 C -0.150 4.150
26 C -0.152 4.152
27 C -0.136 4.136
28 H 0.120 0.880
29 H 0.079 0.921
30 H 0.064 0.936
31 H 0.058 0.942
32 H 0.093 0.907
33 H 0.060 0.940
34 H 0.147 0.853
35 H 0.196 0.804
36 H 0.199 0.801
37 H 0.197 0.803
38 H 0.065 0.935
39 H 0.098 0.902
40 H 0.097 0.903
41 H 0.084 0.916
42 H 0.111 0.889
43 H 0.085 0.915
44 H 0.087 0.913
45 H 0.046 0.954
46 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -1.302 -17.302 3.075 17.621
hybrid contribution 0.758 1.123 -0.086 1.357
sum -0.544 -16.179 2.989 16.462
Atomic orbital electron populations
1.21734 0.92497 1.03544 1.02255 1.22982 0.96780 0.83337 1.00597
1.87994 1.20349 1.27760 1.94625 1.21861 0.82058 0.95952 0.95705
0.90655 1.19724 0.83636 0.89743 0.85969 1.90399 1.49665 1.31659
1.64458 1.41186 1.25853 1.05020 1.43743 1.19556 1.20382 0.92097
1.11832 0.90134 1.25842 1.00121 1.02439 0.97163 1.70677 1.31426
1.28290 1.13916 0.84914 0.77544 0.77901 0.78275 1.19073 1.21817
1.19876 1.18908 0.93851 0.87694 0.88861 1.22239 1.02356 0.95627
1.01267 1.21941 0.94304 0.95793 0.95975 1.22513 1.01491 1.01394
0.94259 1.23214 0.93722 0.87247 1.01669 1.67328 1.17903 1.26913
1.13451 1.21935 0.98392 0.97595 0.92796 1.22705 1.02138 0.94424
0.96551 1.22442 0.97721 0.99076 0.95743 1.22335 0.98672 0.97002
0.97219 1.21773 0.97720 0.97165 0.96985 0.88023 0.92092 0.93599
0.94205 0.90699 0.94018 0.85254 0.80379 0.80139 0.80341 0.93502
0.90159 0.90275 0.91558 0.88908 0.91481 0.91262 0.95355 0.93427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.54 10.28 71.98 0.74 -2.80 16
2 C 0.04 1.16 6.32 71.98 0.46 1.62 16
3 O -0.39 -16.52 8.07 -135.34 -1.09 -17.61 16
4 C 0.11 4.61 1.56 29.85 0.05 4.65 16
5 H 0.08 2.98 4.27 -2.39 -0.01 2.97 16
6 C 0.42 23.72 5.31 87.65 0.47 24.19 16
7 O -0.49 -32.30 13.14 10.64 0.14 -32.16 16
8 N -0.44 -24.38 2.76 -464.38 -1.28 -25.66 16
9 C -0.31 -18.66 9.64 84.01 0.81 -17.85 16
10 H 0.08 4.78 7.84 -2.91 -0.02 4.76 16
11 C -0.05 -3.06 5.02 84.91 0.43 -2.64 16
12 N -0.80 -49.63 9.04 21.65 0.20 -49.44 16
13 Si 0.99 47.88 29.56 68.60 2.03 49.90 16
14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
15 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16
16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
17 C 0.33 15.20 5.65 132.90 0.75 15.95 16
18 C -0.19 -6.75 7.54 22.50 0.17 -6.58 16
19 C -0.05 -1.28 10.17 22.45 0.23 -1.05 16
20 C -0.18 -3.82 10.11 22.39 0.23 -3.59 16
21 C 0.10 2.95 11.18 84.66 0.95 3.89 16
22 N -0.54 -23.38 10.39 -192.96 -2.00 -25.38 16
23 C -0.09 -3.44 2.72 -10.07 -0.03 -3.47 16
24 C -0.12 -3.26 6.19 31.67 0.20 -3.06 16
25 C -0.11 -2.63 6.91 31.88 0.22 -2.41 16
26 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16
27 C -0.10 -4.00 5.96 31.32 0.19 -3.81 16
28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.08 1.87 5.08 -2.39 -0.01 1.86 16
33 H 0.25 15.12 8.32 -92.71 -0.77 14.35 16
34 H 0.13 4.54 7.39 -2.91 -0.02 4.52 16
35 H 0.18 2.50 8.06 -2.92 -0.02 2.47 16
36 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16
37 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16
38 H 0.05 2.16 7.97 -2.39 -0.02 2.14 16
39 H 0.08 1.93 4.72 -2.39 -0.01 1.92 16
40 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16
41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16
44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
45 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16
46 H 0.05 2.26 6.53 -2.39 -0.02 2.25 16
Total: -1.00 -83.93 363.36 5.01 -78.91
By element:
Atomic # 1 Polarization: 20.48 SS G_CDS: 0.97 Total: 21.46 kcal
Atomic # 6 Polarization: -6.08 SS G_CDS: 6.06 Total: -0.03 kcal
Atomic # 7 Polarization: -97.39 SS G_CDS: -3.09 Total: -100.48 kcal
Atomic # 8 Polarization: -48.81 SS G_CDS: -0.95 Total: -49.76 kcal
Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal
Total: -83.93 5.01 -78.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892473578.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.898 kcal
(2) G-P(sol) polarization free energy of solvation -83.927 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.015 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds