Wall clock time and date at job start Tue Mar 31 2020 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00039 * 2 1 4 4 C 1.46906 * 110.99960 * 123.95103 * 2 1 3 5 5 H 1.09004 * 109.46603 * 39.53739 * 4 2 1 6 6 C 1.52998 * 109.47043 * 159.53760 * 4 2 1 7 7 N 1.46502 * 109.47050 * 304.99638 * 6 4 2 8 8 C 1.34777 * 119.99800 * 179.97438 * 7 6 4 9 9 O 1.21586 * 120.00056 * 0.02562 * 8 7 6 10 10 C 1.47543 * 119.99648 * 180.02562 * 8 7 6 11 11 C 1.39656 * 120.19751 * 0.02562 * 10 8 7 12 12 C 1.37831 * 119.91725 * 179.97438 * 11 10 8 13 13 C 1.38569 * 120.32663 * 0.02562 * 12 11 10 14 14 C 1.38032 * 120.39727 * 359.97438 * 13 12 11 15 15 C 1.38827 * 120.07426 * 359.95976 * 14 13 12 16 16 O 1.35516 * 120.16162 * 180.02562 * 15 14 13 17 17 C 1.34807 * 117.00239 * 355.86106 * 16 15 14 18 18 H 1.07999 * 119.99861 * 5.45820 * 17 16 15 19 19 C 1.38703 * 120.00452 * 185.45928 * 17 16 15 20 20 N 1.31515 * 119.99620 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00352 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46799 * 59.99794 * 21 19 17 23 23 H 1.48499 * 109.47276 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46821 * 300.00417 * 21 19 17 25 25 C 1.52999 * 109.47011 * 279.53726 * 4 2 1 26 26 C 1.53005 * 117.49625 * 135.62863 * 25 4 2 27 27 C 1.53001 * 117.49843 * 66.97146 * 25 4 2 28 28 H 1.09005 * 109.47218 * 315.22272 * 1 2 3 29 29 H 1.09005 * 109.47020 * 75.22178 * 1 2 3 30 30 H 1.08997 * 109.47551 * 195.22326 * 1 2 3 31 31 H 1.08999 * 109.46759 * 183.95388 * 3 2 1 32 32 H 1.09000 * 109.47104 * 303.94932 * 3 2 1 33 33 H 1.08998 * 109.47305 * 63.95654 * 3 2 1 34 34 H 1.09003 * 109.46983 * 185.00408 * 6 4 2 35 35 H 1.08993 * 109.47501 * 65.00441 * 6 4 2 36 36 H 0.96996 * 119.99887 * 0.02562 * 7 6 4 37 37 H 1.08001 * 120.04221 * 0.27667 * 11 10 8 38 38 H 1.08003 * 119.83700 * 180.02562 * 12 11 10 39 39 H 1.07995 * 119.80165 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.95825 * 179.97438 * 14 13 12 41 41 H 0.97008 * 119.99757 * 179.97438 * 20 19 17 42 42 H 1.08991 * 115.54988 * 281.29743 * 25 4 2 43 43 H 1.09003 * 117.49856 * 0.02562 * 26 25 4 44 44 H 1.08999 * 117.49713 * 145.01954 * 26 25 4 45 45 H 1.08999 * 117.50090 * 214.97587 * 27 25 4 46 46 H 1.08997 * 117.49894 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1377 5 1 1.3857 -1.6567 1.2892 6 6 3.4399 -1.1797 0.8492 7 7 3.4950 -1.9079 -0.4208 8 6 4.6737 -2.3721 -0.8809 9 8 5.6912 -2.1868 -0.2417 10 6 4.7292 -3.1050 -2.1602 11 6 3.5630 -3.3196 -2.8979 12 6 3.6215 -4.0045 -4.0926 13 6 4.8328 -4.4827 -4.5663 14 6 5.9935 -4.2781 -3.8479 15 6 5.9538 -3.5891 -2.6433 16 8 7.0924 -3.3868 -1.9368 17 6 8.2183 -3.9536 -2.4148 18 1 8.2040 -4.4630 -3.3671 19 6 9.3949 -3.8828 -1.6838 20 7 9.4120 -3.2630 -0.5240 21 14 10.9547 -4.6689 -2.3459 22 1 11.3049 -4.0514 -3.6502 23 1 12.0643 -4.4549 -1.3825 24 1 10.7346 -6.1257 -2.5312 25 6 1.9551 0.1004 2.3981 26 6 1.4404 -0.5482 3.6848 27 6 0.5797 0.4820 2.9492 28 1 -0.3634 0.7295 0.7239 29 1 -0.3633 0.2621 -0.9937 30 1 -0.3634 -0.9915 0.2698 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 3.8011 -1.8222 1.6523 35 1 4.0668 -0.2904 0.7857 36 1 2.6832 -2.0553 -0.9309 37 1 2.6171 -2.9451 -2.5352 38 1 2.7189 -4.1694 -4.6622 39 1 4.8688 -5.0186 -5.5032 40 1 6.9336 -4.6541 -4.2236 41 1 10.2349 -3.2137 -0.0126 42 1 2.7554 0.8345 2.4898 43 1 1.1310 -1.5921 3.6334 44 1 1.9020 -0.2403 4.6230 45 1 0.4754 1.4672 3.4039 46 1 -0.2963 0.1163 2.4136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919819437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:35 Heat of formation + Delta-G solvation = 6.776606 kcal Electronic energy + Delta-G solvation = -26846.064906 eV Core-core repulsion = 23124.013131 eV Total energy + Delta-G solvation = -3722.051775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83007 -39.22696 -37.76037 -36.24190 -35.51719 -33.79229 -32.27411 -30.82422 -29.07138 -28.80882 -27.74368 -25.35786 -24.40669 -23.12305 -22.67718 -22.21072 -21.19021 -19.99754 -19.52021 -17.96167 -17.50145 -16.39800 -16.07216 -15.78150 -15.41002 -14.92040 -14.71470 -14.47215 -14.21123 -14.06452 -13.89215 -13.71231 -13.45847 -13.31930 -12.63021 -12.52207 -12.38281 -12.30679 -12.09834 -11.81240 -11.66793 -11.65630 -11.51532 -11.26676 -11.11611 -11.03675 -10.82245 -10.72675 -10.58980 -10.43264 -10.33587 -9.49061 -8.81653 -8.72885 -8.43780 -8.31837 -8.15446 -7.22363 -6.38115 -3.98059 1.82045 2.40635 3.15332 3.17583 3.19723 3.38236 3.80913 3.87973 3.94763 3.98754 4.47011 4.60508 4.73663 4.74305 4.88605 5.01152 5.14918 5.18735 5.24842 5.27817 5.32209 5.34121 5.46649 5.54695 5.57509 5.62998 5.66008 5.69663 5.80481 5.83299 5.89067 5.89188 6.02090 6.07261 6.21101 6.23576 6.65420 6.78678 6.84983 6.90979 7.00059 7.14805 7.18413 7.32334 7.36664 7.78089 7.99250 8.35244 9.01599 9.26726 9.75518 10.75786 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.003338 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.402145 B = 8386.770123 C = 9764.174784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.023 3.977 4 C 0.102 3.898 5 H 0.085 0.915 6 C 0.141 3.859 7 N -0.730 5.730 8 C 0.552 3.448 9 O -0.507 6.507 10 C -0.224 4.224 11 C -0.036 4.036 12 C -0.232 4.232 13 C -0.052 4.052 14 C -0.240 4.240 15 C 0.189 3.811 16 O -0.124 6.124 17 C -0.404 4.404 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.834 5.834 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.182 4.182 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.271 0.729 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 5.474 2.281 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.125 4.125 4 C -0.007 4.007 5 H 0.103 0.897 6 C 0.016 3.984 7 N -0.386 5.386 8 C 0.342 3.658 9 O -0.382 6.382 10 C -0.229 4.229 11 C -0.055 4.055 12 C -0.251 4.251 13 C -0.071 4.071 14 C -0.260 4.260 15 C 0.130 3.870 16 O -0.023 6.023 17 C -0.480 4.480 18 H 0.110 0.890 19 C -0.163 4.163 20 N -0.465 5.465 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.198 4.198 26 C -0.209 4.209 27 C -0.219 4.219 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.870 5.582 2.749 17.981 hybrid contribution 0.038 -0.026 0.069 0.082 sum -16.833 5.556 2.817 17.949 Atomic orbital electron populations 1.22586 0.87740 1.01239 1.01472 1.62186 1.07464 1.14601 1.41206 1.22414 1.01302 0.88445 1.00372 1.21676 0.96736 0.95484 0.86831 0.89675 1.21062 0.93890 0.96482 0.86966 1.45661 1.10224 1.59183 1.23533 1.18222 0.82971 0.79169 0.85480 1.90936 1.33156 1.56223 1.57907 1.18892 0.92224 1.13027 0.98718 1.20786 0.95579 0.95342 0.93809 1.20456 0.97347 1.08260 0.99019 1.20881 0.92400 0.96094 0.97685 1.21144 0.99341 1.08020 0.97451 1.19296 0.87032 0.90704 0.89980 1.84183 1.12596 1.60592 1.44886 1.21438 0.85309 1.35762 1.05514 0.89003 1.25365 0.98767 0.96823 0.95324 1.70126 1.28110 1.37114 1.11182 0.85816 0.79722 0.79413 0.78656 1.19412 1.20208 1.19414 1.22869 0.98164 1.03374 0.95413 1.22975 1.03653 0.98416 0.95846 1.23079 0.94344 1.00218 1.04285 0.94742 0.91453 0.91834 0.91065 0.91729 0.94835 0.91509 0.92067 0.76732 0.86898 0.87381 0.87307 0.85175 0.91910 0.87336 0.88591 0.88673 0.88952 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.64 60.06 0.52 0.66 16 2 N -0.53 -5.45 4.34 -243.17 -1.05 -6.51 16 3 C 0.02 0.23 8.72 60.06 0.52 0.75 16 4 C 0.10 1.09 2.10 -67.71 -0.14 0.95 16 5 H 0.09 0.87 7.41 -51.93 -0.38 0.49 16 6 C 0.14 2.09 5.08 -4.04 -0.02 2.07 16 7 N -0.73 -12.36 5.34 -61.35 -0.33 -12.69 16 8 C 0.55 12.56 7.76 -12.47 -0.10 12.46 16 9 O -0.51 -14.27 15.17 -16.56 -0.25 -14.52 16 10 C -0.22 -5.03 5.89 -104.81 -0.62 -5.64 16 11 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 12 C -0.23 -3.94 10.02 -39.61 -0.40 -4.33 16 13 C -0.05 -0.95 10.03 -39.53 -0.40 -1.34 16 14 C -0.24 -5.31 9.16 -39.44 -0.36 -5.67 16 15 C 0.19 4.83 6.66 -38.60 -0.26 4.57 16 16 O -0.12 -3.75 7.84 -21.02 -0.16 -3.92 16 17 C -0.40 -11.67 9.49 30.90 0.29 -11.38 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.27 5.49 -17.52 -0.10 1.17 16 20 N -0.83 -25.53 13.67 55.48 0.76 -24.77 16 21 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.18 -1.67 3.34 -90.62 -0.30 -1.98 16 26 C -0.17 -1.44 10.18 -26.69 -0.27 -1.71 16 27 C -0.18 -1.41 8.78 -26.69 -0.23 -1.64 16 28 H 0.03 0.25 5.82 -51.93 -0.30 -0.05 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 7.60 -51.93 -0.39 0.08 16 31 H 0.07 0.83 7.03 -51.93 -0.36 0.47 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.30 6.35 -51.93 -0.33 -0.03 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.00 7.15 -51.93 -0.37 0.62 16 36 H 0.40 5.75 6.17 -40.82 -0.25 5.50 16 37 H 0.11 1.62 6.40 -52.49 -0.34 1.28 16 38 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.11 1.09 7.79 -51.93 -0.40 0.68 16 43 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.71 5.98 -51.93 -0.31 0.40 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -34.67 369.86 -9.25 -43.92 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.53 Total: 9.16 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.23 Total: -12.08 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.62 Total: -43.96 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.42 Total: -18.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.67 -9.25 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919819437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.698 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds