Wall clock time and date at job start Tue Mar 31 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46895 * 2 1 4 4 C 1.35661 * 116.99735 * 180.02562 * 3 2 1 5 5 C 1.38705 * 120.14927 * 0.23266 * 4 3 2 6 6 C 1.38057 * 120.08191 * 180.27768 * 5 4 3 7 7 C 1.38548 * 120.38881 * 359.74237 * 6 5 4 8 8 C 1.37782 * 120.30465 * 0.02562 * 7 6 5 9 9 C 1.39714 * 119.90490 * 359.97438 * 8 7 6 10 10 C 1.47531 * 120.18920 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99959 * 226.98667 * 10 9 8 12 12 N 1.34782 * 120.00100 * 46.99086 * 10 9 8 13 13 C 1.47425 * 125.64755 * 175.12965 * 12 10 9 14 14 C 1.54905 * 104.83195 * 204.17331 * 13 12 10 15 15 H 1.09001 * 111.00611 * 81.06005 * 14 13 12 16 16 C 1.52994 * 111.00717 * 204.91947 * 14 13 12 17 17 C 1.55158 * 101.58234 * 322.99086 * 14 13 12 18 18 H 1.09002 * 110.71980 * 277.14137 * 17 14 13 19 19 N 1.46508 * 110.72298 * 154.03828 * 17 14 13 20 20 C 1.36937 * 119.99527 * 154.99873 * 19 17 14 21 21 H 1.07999 * 120.00289 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99250 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00417 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99656 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47064 * 89.99896 * 24 22 20 26 26 H 1.48501 * 109.47117 * 210.00060 * 24 22 20 27 27 H 1.48500 * 109.46945 * 329.99958 * 24 22 20 28 28 C 1.47015 * 125.64709 * 355.17920 * 12 10 9 29 29 H 1.09003 * 109.47068 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.47083 * 60.00050 * 1 2 3 31 31 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47297 * 240.00292 * 2 1 3 33 33 H 1.08998 * 109.47083 * 119.99950 * 2 1 3 34 34 H 1.07996 * 119.96388 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.80360 * 179.71748 * 6 5 4 36 36 H 1.08008 * 119.84736 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.04814 * 179.97438 * 8 7 6 38 38 H 1.09000 * 110.36679 * 85.33656 * 13 12 10 39 39 H 1.08998 * 110.36760 * 323.01494 * 13 12 10 40 40 H 1.09003 * 109.47753 * 172.19672 * 16 14 13 41 41 H 1.09005 * 109.46876 * 292.19274 * 16 14 13 42 42 H 1.09002 * 109.47571 * 52.19361 * 16 14 13 43 43 H 0.96989 * 119.99622 * 335.00789 * 19 17 14 44 44 H 0.96996 * 120.00159 * 180.02562 * 23 22 20 45 45 H 1.09009 * 109.88128 * 59.48072 * 28 12 10 46 46 H 1.08995 * 110.01217 * 298.39211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.1990 0.4273 -0.0059 6 6 5.5675 0.6097 -0.0007 7 6 6.1042 1.8870 0.0046 8 6 5.2769 2.9888 0.0052 9 6 3.8902 2.8186 -0.0001 10 6 2.9985 3.9940 0.0011 11 8 2.0562 4.0414 0.7681 12 7 3.2284 5.0151 -0.8480 13 6 2.3653 6.1973 -1.0237 14 6 2.6803 6.7097 -2.4512 15 1 2.1367 6.1353 -3.2014 16 6 2.3731 8.2031 -2.5782 17 6 4.2063 6.4457 -2.5472 18 1 4.7678 7.2558 -2.0818 19 7 4.6151 6.2692 -3.9430 20 6 5.9057 6.5331 -4.3169 21 1 6.6223 6.8709 -3.5829 22 6 6.2929 6.3663 -5.6395 23 7 5.4194 5.9550 -6.5341 24 14 8.0536 6.7255 -6.1496 25 1 8.8695 5.4920 -6.0150 26 1 8.0762 7.1823 -7.5625 27 1 8.6148 7.7879 -5.2769 28 6 4.3808 5.1340 -1.7531 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7882 -0.5715 -0.0093 35 1 6.2234 -0.2483 -0.0003 36 1 7.1761 2.0196 0.0091 37 1 5.6998 3.9825 0.0098 38 1 2.6108 6.9596 -0.2843 39 1 1.3153 5.9155 -0.9449 40 1 2.7308 8.5671 -3.5414 41 1 1.2967 8.3598 -2.5076 42 1 2.8728 8.7463 -1.7762 43 1 3.9716 5.9655 -4.6020 44 1 5.6901 5.8381 -7.4582 45 1 4.4033 4.2862 -2.4380 46 1 5.3054 5.1695 -1.1770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939643892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:17 Heat of formation + Delta-G solvation = -31.598502 kcal Electronic energy + Delta-G solvation = -27135.562267 eV Core-core repulsion = 23411.846422 eV Total energy + Delta-G solvation = -3723.715845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58811 -39.31693 -37.57234 -37.17828 -34.03954 -32.64143 -32.10703 -31.07757 -30.60096 -29.60958 -27.51030 -26.30480 -24.39926 -23.97664 -23.13058 -21.76618 -21.27181 -19.92292 -19.59629 -18.04528 -17.15428 -16.98366 -16.26884 -16.23189 -15.63819 -15.42301 -14.96531 -14.57714 -14.30770 -13.89010 -13.54178 -13.48574 -13.41814 -13.10504 -13.01788 -12.75655 -12.56732 -12.38507 -12.18541 -12.03914 -11.88237 -11.66173 -11.45863 -11.15786 -11.06867 -10.98713 -10.89259 -10.70252 -10.58327 -10.23954 -9.96502 -9.78130 -9.58950 -9.07952 -8.96208 -8.32001 -8.17675 -7.09016 -5.85211 -3.15833 1.00052 1.37025 2.96309 3.06951 3.28653 3.38645 3.44387 3.45786 3.79457 4.50444 4.59419 4.69249 4.74273 4.81473 4.92746 5.00229 5.06250 5.17340 5.19447 5.26588 5.27538 5.35001 5.55792 5.58881 5.62560 5.67753 5.74947 5.82300 5.87383 5.89498 5.96064 6.03279 6.12960 6.22464 6.23805 6.28676 6.38204 6.44028 6.53350 6.61225 6.66127 6.67756 6.90132 7.32086 7.62461 7.86862 8.31905 8.47052 9.44098 9.98346 10.33423 11.36734 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003884 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.960238 B = 7207.188709 C = 8329.818182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.296 6.296 4 C 0.176 3.824 5 C -0.219 4.219 6 C -0.061 4.061 7 C -0.162 4.162 8 C -0.047 4.047 9 C -0.156 4.156 10 C 0.579 3.421 11 O -0.539 6.539 12 N -0.609 5.609 13 C 0.116 3.884 14 C -0.115 4.115 15 H 0.083 0.917 16 C -0.132 4.132 17 C 0.177 3.823 18 H 0.069 0.931 19 N -0.710 5.710 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.071 3.929 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.073 0.927 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 -9.741 13.378 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.209 6.209 4 C 0.129 3.871 5 C -0.238 4.238 6 C -0.080 4.080 7 C -0.180 4.180 8 C -0.065 4.065 9 C -0.159 4.159 10 C 0.368 3.632 11 O -0.417 6.417 12 N -0.342 5.342 13 C -0.007 4.007 14 C -0.135 4.135 15 H 0.101 0.899 16 C -0.190 4.190 17 C 0.064 3.936 18 H 0.087 0.913 19 N -0.350 5.350 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.055 4.055 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.152 -9.566 13.770 17.541 hybrid contribution 1.034 -0.377 -0.676 1.291 sum -4.118 -9.943 13.095 16.950 Atomic orbital electron populations 1.21756 0.92622 1.02570 1.03894 1.22833 0.96213 0.82021 1.01224 1.86205 1.18362 1.28967 1.87343 1.18863 0.82751 0.92553 0.92982 1.21156 0.94391 0.97711 1.10513 1.21066 0.94187 0.97493 0.95210 1.21001 1.00206 0.92107 1.04689 1.21321 0.90933 1.00050 0.94189 1.19186 0.93861 0.91205 1.11692 1.17645 0.84179 0.81433 0.79937 1.90755 1.31224 1.80046 1.39630 1.48412 1.25785 1.20468 1.39582 1.22249 0.94949 0.86741 0.96738 1.22658 0.98392 0.97129 0.95336 0.89904 1.21599 1.00425 0.94267 1.02719 1.21258 0.92007 0.93053 0.87244 0.91317 1.42355 1.10548 1.79570 1.02511 1.19247 0.87203 1.38245 0.93138 0.90971 1.24753 0.97853 1.01791 0.96025 1.69659 1.33428 1.52281 1.02272 0.86208 0.84451 0.77895 0.77717 1.21636 1.21756 1.20653 1.23449 0.86953 1.02960 0.92117 0.91347 0.91407 0.90472 0.91984 0.92030 0.85118 0.85498 0.85219 0.84446 0.91655 0.91042 0.91320 0.93231 0.92870 0.77884 0.93367 0.90863 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.30 -4.56 9.11 -30.13 -0.27 -4.84 16 4 C 0.18 2.68 6.67 -38.70 -0.26 2.42 16 5 C -0.22 -2.64 9.03 -39.48 -0.36 -2.99 16 6 C -0.06 -0.68 10.03 -39.53 -0.40 -1.07 16 7 C -0.16 -1.94 10.02 -39.63 -0.40 -2.33 16 8 C -0.05 -0.66 8.52 -39.20 -0.33 -0.99 16 9 C -0.16 -2.55 5.44 -104.85 -0.57 -3.12 16 10 C 0.58 10.71 7.15 -12.47 -0.09 10.62 16 11 O -0.54 -11.33 16.73 -6.17 -0.10 -11.44 16 12 N -0.61 -10.54 3.33 -171.75 -0.57 -11.11 16 13 C 0.12 1.83 6.36 -2.53 -0.02 1.82 16 14 C -0.12 -1.87 3.27 -88.48 -0.29 -2.16 16 15 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 16 C -0.13 -1.90 9.31 37.15 0.35 -1.55 16 17 C 0.18 3.31 3.08 -66.09 -0.20 3.10 16 18 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 19 N -0.71 -16.64 5.16 -51.64 -0.27 -16.91 16 20 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 24 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.07 1.25 5.38 -3.07 -0.02 1.24 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 33 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 34 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.14 1.82 5.89 -52.49 -0.31 1.51 16 38 H 0.07 0.95 7.98 -51.93 -0.41 0.54 16 39 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.39 9.80 7.76 -40.82 -0.32 9.48 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.07 1.45 8.03 -51.92 -0.42 1.03 16 46 H 0.06 0.98 5.97 -51.93 -0.31 0.67 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -32.09 376.08 -9.16 -41.24 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.07 Total: 9.34 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.24 Total: -2.16 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.11 Total: -54.27 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.38 Total: -16.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.09 -9.16 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939643892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.646 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds