Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46895 * 2 1 4 4 C 1.35661 * 116.99735 * 180.02562 * 3 2 1 5 5 C 1.38705 * 120.14927 * 0.23266 * 4 3 2 6 6 C 1.38057 * 120.08191 * 180.27768 * 5 4 3 7 7 C 1.38548 * 120.38881 * 359.74237 * 6 5 4 8 8 C 1.37782 * 120.30465 * 0.02562 * 7 6 5 9 9 C 1.39714 * 119.90490 * 359.97438 * 8 7 6 10 10 C 1.47531 * 120.18920 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99959 * 226.98667 * 10 9 8 12 12 N 1.34782 * 120.00100 * 46.99086 * 10 9 8 13 13 C 1.47425 * 125.64755 * 175.12965 * 12 10 9 14 14 C 1.54905 * 104.83195 * 204.17331 * 13 12 10 15 15 H 1.09001 * 111.00611 * 81.06005 * 14 13 12 16 16 C 1.52994 * 111.00717 * 204.91947 * 14 13 12 17 17 C 1.55158 * 101.58234 * 322.99086 * 14 13 12 18 18 H 1.09002 * 110.71980 * 277.14137 * 17 14 13 19 19 N 1.46508 * 110.72298 * 154.03828 * 17 14 13 20 20 C 1.36937 * 119.99527 * 154.99873 * 19 17 14 21 21 H 1.07999 * 120.00289 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99250 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00417 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99656 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47064 * 89.99896 * 24 22 20 26 26 H 1.48501 * 109.47117 * 210.00060 * 24 22 20 27 27 H 1.48500 * 109.46945 * 329.99958 * 24 22 20 28 28 C 1.47015 * 125.64709 * 355.17920 * 12 10 9 29 29 H 1.09003 * 109.47068 * 300.00131 * 1 2 3 30 30 H 1.08998 * 109.47083 * 60.00050 * 1 2 3 31 31 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47297 * 240.00292 * 2 1 3 33 33 H 1.08998 * 109.47083 * 119.99950 * 2 1 3 34 34 H 1.07996 * 119.96388 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.80360 * 179.71748 * 6 5 4 36 36 H 1.08008 * 119.84736 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.04814 * 179.97438 * 8 7 6 38 38 H 1.09000 * 110.36679 * 85.33656 * 13 12 10 39 39 H 1.08998 * 110.36760 * 323.01494 * 13 12 10 40 40 H 1.09003 * 109.47753 * 172.19672 * 16 14 13 41 41 H 1.09005 * 109.46876 * 292.19274 * 16 14 13 42 42 H 1.09002 * 109.47571 * 52.19361 * 16 14 13 43 43 H 0.96989 * 119.99622 * 335.00789 * 19 17 14 44 44 H 0.96996 * 120.00159 * 180.02562 * 23 22 20 45 45 H 1.09009 * 109.88128 * 59.48072 * 28 12 10 46 46 H 1.08995 * 110.01217 * 298.39211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.1990 0.4273 -0.0059 6 6 5.5675 0.6097 -0.0007 7 6 6.1042 1.8870 0.0046 8 6 5.2769 2.9888 0.0052 9 6 3.8902 2.8186 -0.0001 10 6 2.9985 3.9940 0.0011 11 8 2.0562 4.0414 0.7681 12 7 3.2284 5.0151 -0.8480 13 6 2.3653 6.1973 -1.0237 14 6 2.6803 6.7097 -2.4512 15 1 2.1367 6.1353 -3.2014 16 6 2.3731 8.2031 -2.5782 17 6 4.2063 6.4457 -2.5472 18 1 4.7678 7.2558 -2.0818 19 7 4.6151 6.2692 -3.9430 20 6 5.9057 6.5331 -4.3169 21 1 6.6223 6.8709 -3.5829 22 6 6.2929 6.3663 -5.6395 23 7 5.4194 5.9550 -6.5341 24 14 8.0536 6.7255 -6.1496 25 1 8.8695 5.4920 -6.0150 26 1 8.0762 7.1823 -7.5625 27 1 8.6148 7.7879 -5.2769 28 6 4.3808 5.1340 -1.7531 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7882 -0.5715 -0.0093 35 1 6.2234 -0.2483 -0.0003 36 1 7.1761 2.0196 0.0091 37 1 5.6998 3.9825 0.0098 38 1 2.6108 6.9596 -0.2843 39 1 1.3153 5.9155 -0.9449 40 1 2.7308 8.5671 -3.5414 41 1 1.2967 8.3598 -2.5076 42 1 2.8728 8.7463 -1.7762 43 1 3.9716 5.9655 -4.6020 44 1 5.6901 5.8381 -7.4582 45 1 4.4033 4.2862 -2.4380 46 1 5.3054 5.1695 -1.1770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939643892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = -50.631949 kcal Electronic energy + Delta-G solvation = -27136.387620 eV Core-core repulsion = 23411.846422 eV Total energy + Delta-G solvation = -3724.541197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74101 -40.57237 -38.85718 -38.35952 -35.84399 -34.07229 -32.97465 -32.59355 -31.91406 -30.58251 -29.15657 -27.55085 -25.95196 -25.13561 -24.33182 -22.90242 -22.48322 -21.39770 -20.84082 -19.12007 -19.06805 -18.24853 -17.50549 -17.18520 -17.02534 -16.64729 -16.27344 -15.94415 -15.55259 -15.38785 -15.15879 -14.65944 -14.45951 -14.41740 -14.27700 -14.07696 -13.73208 -13.45383 -13.42397 -13.00576 -12.97820 -12.94052 -12.85239 -12.78872 -12.53709 -12.20476 -12.14858 -12.03189 -12.00280 -11.71306 -11.66385 -11.42896 -11.04650 -10.86579 -10.07174 -9.67733 -9.25460 -9.04156 -7.91752 -5.21861 -0.03820 0.38396 1.52301 1.52615 1.61035 1.62901 1.98077 2.17171 2.58967 2.74447 3.34789 3.40487 3.68662 3.77626 3.84742 3.89762 3.93251 4.00278 4.14762 4.20487 4.22171 4.31556 4.32303 4.36944 4.45479 4.49031 4.61539 4.64619 4.79621 4.81046 4.87486 4.88947 4.92423 5.09200 5.11433 5.12709 5.19505 5.28768 5.30714 5.32482 5.45261 5.49332 5.57291 5.74576 6.27918 6.35267 6.47491 7.06729 7.35908 8.06591 8.31452 9.31328 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012198 B = 0.003884 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.960238 B = 7207.188709 C = 8329.818182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.156 3.844 5 C -0.217 4.217 6 C -0.052 4.052 7 C -0.164 4.164 8 C -0.057 4.057 9 C -0.193 4.193 10 C 0.576 3.424 11 O -0.574 6.574 12 N -0.610 5.610 13 C 0.117 3.883 14 C -0.105 4.105 15 H 0.067 0.933 16 C -0.126 4.126 17 C 0.172 3.828 18 H 0.077 0.923 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.969 5.969 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.301 1.301 27 H -0.267 1.267 28 C 0.087 3.913 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.049 0.951 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -10.800 14.664 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.244 6.244 4 C 0.108 3.892 5 C -0.235 4.235 6 C -0.070 4.070 7 C -0.181 4.181 8 C -0.076 4.076 9 C -0.197 4.197 10 C 0.367 3.633 11 O -0.454 6.454 12 N -0.342 5.342 13 C -0.005 4.005 14 C -0.125 4.125 15 H 0.085 0.915 16 C -0.183 4.183 17 C 0.062 3.938 18 H 0.095 0.905 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.619 5.619 24 Si 0.798 3.202 25 H -0.215 1.215 26 H -0.228 1.228 27 H -0.192 1.192 28 C -0.038 4.038 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.156 0.844 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.697 -10.611 15.105 18.826 hybrid contribution 0.534 -0.119 -0.994 1.134 sum -3.163 -10.730 14.111 18.008 Atomic orbital electron populations 1.21802 0.91959 1.04251 1.02614 1.23169 0.96842 0.80431 1.02753 1.86167 1.18836 1.31822 1.87536 1.19169 0.83253 0.93068 0.93677 1.21521 0.94652 0.98049 1.09283 1.21567 0.94260 0.98404 0.92750 1.21378 1.01313 0.91903 1.03552 1.21426 0.90315 1.01071 0.94758 1.19275 0.94587 0.91015 1.14793 1.18089 0.84034 0.81946 0.79282 1.90712 1.32902 1.80759 1.41065 1.48456 1.25775 1.20842 1.39145 1.22324 0.94753 0.86725 0.96701 1.22556 0.96257 0.98474 0.95206 0.91495 1.21551 1.02044 0.92553 1.02187 1.21440 0.93736 0.93582 0.85068 0.90500 1.42471 1.09646 1.79624 1.04130 1.19650 0.88209 1.36075 0.93206 0.89931 1.25507 1.01421 1.02914 0.96354 1.69818 1.35246 1.54625 1.02196 0.85210 0.80283 0.77878 0.76802 1.21500 1.22761 1.19151 1.23115 0.87802 1.01119 0.91793 0.92483 0.92799 0.87251 0.90575 0.90134 0.82271 0.81615 0.82628 0.84405 0.89763 0.91250 0.93256 0.91096 0.91232 0.79396 0.94123 0.93276 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.04 0.84 5.46 71.98 0.39 1.23 16 3 O -0.33 -10.31 9.11 -78.82 -0.72 -11.02 16 4 C 0.16 4.69 6.67 22.84 0.15 4.85 16 5 C -0.22 -4.72 9.03 22.34 0.20 -4.52 16 6 C -0.05 -0.97 10.03 22.30 0.22 -0.75 16 7 C -0.16 -3.51 10.02 22.24 0.22 -3.29 16 8 C -0.06 -1.58 8.52 22.52 0.19 -1.38 16 9 C -0.19 -6.40 5.44 -20.01 -0.11 -6.51 16 10 C 0.58 21.84 7.15 86.69 0.62 22.46 16 11 O -0.57 -24.94 16.73 6.93 0.12 -24.82 16 12 N -0.61 -21.31 3.33 -815.54 -2.71 -24.03 16 13 C 0.12 3.66 6.36 86.85 0.55 4.21 16 14 C -0.10 -3.39 3.27 -9.41 -0.03 -3.42 16 15 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 16 C -0.13 -3.46 9.31 71.98 0.67 -2.79 16 17 C 0.17 6.40 3.08 46.18 0.14 6.54 16 18 H 0.08 2.76 7.99 -2.39 -0.02 2.74 16 19 N -0.72 -34.09 5.16 -317.30 -1.64 -35.73 16 20 C -0.24 -12.41 9.96 84.04 0.84 -11.58 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 24 Si 0.97 44.10 29.55 68.60 2.03 46.13 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.09 3.09 5.38 86.73 0.47 3.56 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.26 7.65 -2.39 -0.02 1.24 16 33 H 0.08 1.26 7.67 -2.39 -0.02 1.24 16 34 H 0.16 2.43 6.30 -2.91 -0.02 2.41 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 3.58 5.89 -2.91 -0.02 3.57 16 38 H 0.08 2.33 7.98 -2.39 -0.02 2.31 16 39 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.07 1.68 8.07 -2.39 -0.02 1.67 16 43 H 0.37 19.50 7.76 -92.72 -0.72 18.79 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.05 1.99 8.03 -2.38 -0.02 1.97 16 46 H 0.08 2.42 5.97 -2.39 -0.01 2.41 16 Total: -1.00 -71.44 376.08 3.36 -68.08 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.26 Total: 35.08 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 5.74 Total: 3.42 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -4.07 Total: -116.86 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.60 Total: -35.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.44 3.36 -68.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939643892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.448 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds