Wall clock time and date at job start Tue Mar 31 2020 12:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47296 * 2 1 4 4 C 1.35710 * 117.00408 * 179.97438 * 3 2 1 5 5 C 1.38996 * 119.91386 * 179.97438 * 4 3 2 6 6 C 1.37702 * 120.08750 * 180.02562 * 5 4 3 7 7 C 1.39741 * 119.90852 * 0.02562 * 6 5 4 8 8 C 1.47607 * 120.08269 * 180.02562 * 7 6 5 9 9 O 1.21577 * 120.00302 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99565 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99584 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47645 * 325.00135 * 11 10 8 13 13 C 1.52996 * 109.46882 * 85.00727 * 11 10 8 14 14 C 1.53000 * 109.46960 * 204.99961 * 11 10 8 15 15 C 1.53497 * 114.20787 * 180.02562 * 14 11 10 16 16 N 1.47062 * 87.98453 * 87.71861 * 15 14 11 17 17 C 1.36943 * 136.05579 * 207.08745 * 16 15 14 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99622 * 180.27778 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48501 * 109.46896 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47039 * 210.00011 * 21 19 17 24 24 H 1.48501 * 109.47275 * 329.99811 * 21 19 17 25 25 C 1.47067 * 87.88602 * 27.34481 * 16 15 14 26 26 C 1.39726 * 119.82646 * 0.27621 * 7 6 5 27 27 C 1.37707 * 119.91347 * 359.46475 * 26 7 6 28 28 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46893 * 300.00000 * 1 2 3 30 30 H 1.08994 * 109.47107 * 59.99692 * 1 2 3 31 31 H 1.08998 * 109.46893 * 239.99999 * 2 1 3 32 32 H 1.09004 * 109.47051 * 120.00181 * 2 1 3 33 33 H 1.07992 * 119.95530 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.04518 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00244 * 0.02562 * 10 8 7 36 36 H 1.09010 * 109.47036 * 299.99304 * 13 11 10 37 37 H 1.08997 * 109.47848 * 59.99342 * 13 11 10 38 38 H 1.09003 * 109.47365 * 179.97438 * 13 11 10 39 39 H 1.09001 * 113.28445 * 46.93871 * 14 11 10 40 40 H 1.09000 * 113.46436 * 332.93489 * 15 14 11 41 41 H 1.08997 * 113.51966 * 202.51274 * 15 14 11 42 42 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 43 43 H 1.08994 * 113.46653 * 87.43736 * 25 16 15 44 44 H 1.08996 * 113.46465 * 217.87717 * 25 16 15 45 45 H 1.08005 * 120.04595 * 179.70624 * 26 7 6 46 46 H 1.08000 * 119.95739 * 180.25236 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8811 2.8104 0.0000 6 6 5.2456 2.9950 0.0000 7 6 6.0985 1.8880 0.0000 8 6 7.5619 2.0815 0.0006 9 8 8.0266 3.2049 0.0006 10 7 8.3828 1.0126 0.0011 11 6 9.8352 1.2046 0.0011 12 1 10.0852 2.0864 -0.5886 13 6 10.3242 1.3965 1.4381 14 6 10.5121 -0.0249 -0.6079 15 6 12.0438 0.0613 -0.6609 16 7 12.0707 -0.5035 0.6967 17 6 12.9173 -0.4470 1.7715 18 1 13.8267 0.1327 1.7127 19 6 12.6098 -1.1399 2.9344 20 7 11.5019 -1.8468 3.0058 21 14 13.7685 -1.0691 4.3979 22 1 13.3919 0.0703 5.2726 23 1 13.6730 -2.3360 5.1666 24 1 15.1617 -0.8853 3.9178 25 6 10.7915 -1.1611 0.3897 26 6 5.5625 0.5977 -0.0058 27 6 4.1967 0.4214 -0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2212 3.6653 -0.0012 34 1 5.6562 3.9939 -0.0008 35 1 8.0121 0.1163 0.0007 36 1 9.8419 2.2725 1.8721 37 1 10.0742 0.5146 2.0279 38 1 11.4049 1.5389 1.4382 39 1 10.0504 -0.3542 -1.5388 40 1 12.4194 1.0832 -0.7134 41 1 12.4905 -0.5908 -1.4114 42 1 11.2869 -2.3307 3.8185 43 1 10.9073 -2.1359 -0.0840 44 1 10.1004 -1.1807 1.2322 45 1 6.2184 -0.2604 -0.0107 46 1 3.7817 -0.5756 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970816308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:35 Heat of formation + Delta-G solvation = -4.749780 kcal Electronic energy + Delta-G solvation = -26349.958511 eV Core-core repulsion = 22627.406914 eV Total energy + Delta-G solvation = -3722.551597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58238 -40.90223 -39.94691 -38.10855 -35.91293 -34.16684 -33.07315 -32.02403 -31.65320 -30.11979 -29.49558 -26.40127 -26.04265 -25.11461 -24.49128 -23.31094 -22.43835 -21.32322 -20.30836 -19.37219 -18.72864 -18.32009 -17.37580 -17.07533 -16.84117 -16.61194 -16.34387 -16.01766 -15.71286 -15.63046 -15.01876 -14.64754 -14.48240 -14.42380 -14.27935 -13.90699 -13.67338 -13.49884 -13.17763 -13.05135 -12.89046 -12.83168 -12.76280 -12.62996 -12.54198 -12.37802 -12.02302 -11.76600 -11.68316 -11.64663 -11.47904 -11.08924 -10.82551 -10.71391 -10.11275 -10.06331 -9.26828 -8.76135 -7.83929 -5.13493 -0.11692 0.31127 1.46641 1.47825 1.54705 1.86285 2.14766 2.21494 2.50819 2.84823 3.38238 3.57100 3.69084 3.72185 3.78803 3.86002 3.97166 4.08934 4.13193 4.22415 4.36934 4.40787 4.41901 4.53103 4.57889 4.74060 4.86624 4.87498 4.89958 4.94863 4.97107 5.05062 5.08609 5.12421 5.14853 5.20501 5.29385 5.30962 5.36586 5.53404 5.60099 5.62912 5.69553 5.80185 6.02028 6.35740 6.61955 6.99564 7.26215 7.68134 8.69152 9.32869 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.002637 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.283645 B =10614.813297 C =11183.289118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.152 3.848 5 C -0.167 4.167 6 C -0.029 4.029 7 C -0.190 4.190 8 C 0.558 3.442 9 O -0.586 6.586 10 N -0.706 5.706 11 C 0.185 3.815 12 H 0.076 0.924 13 C -0.129 4.129 14 C -0.129 4.129 15 C 0.124 3.876 16 N -0.631 5.631 17 C -0.213 4.213 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.943 5.943 21 Si 0.963 3.037 22 H -0.292 1.292 23 H -0.296 1.296 24 H -0.273 1.273 25 C 0.157 3.843 26 C -0.039 4.039 27 C -0.214 4.214 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.409 0.591 36 H 0.019 0.981 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.245 0.755 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.149 0.851 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.842 1.917 -9.661 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.106 3.894 5 C -0.185 4.185 6 C -0.048 4.048 7 C -0.194 4.194 8 C 0.348 3.652 9 O -0.468 6.468 10 N -0.356 5.356 11 C 0.081 3.919 12 H 0.094 0.906 13 C -0.188 4.188 14 C -0.149 4.149 15 C -0.002 4.002 16 N -0.358 5.358 17 C -0.342 4.342 18 H 0.095 0.905 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.793 3.207 22 H -0.219 1.219 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.032 3.968 26 C -0.058 4.058 27 C -0.232 4.232 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.246 0.754 36 H 0.038 0.962 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.166 0.834 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.516 2.750 -9.342 23.618 hybrid contribution 0.940 -0.777 1.156 1.681 sum -20.576 1.973 -8.186 22.232 Atomic orbital electron populations 1.21814 0.91501 1.04210 1.03228 1.23175 0.96956 0.80430 1.02819 1.86042 1.18387 1.31802 1.87564 1.19397 0.82934 0.94299 0.92790 1.20530 0.94520 0.95902 1.07554 1.21106 0.92102 0.98889 0.92687 1.19816 0.91727 0.95473 1.12340 1.18550 0.87190 0.84223 0.75272 1.90722 1.78340 1.25105 1.52642 1.45904 1.06447 1.09368 1.73907 1.20312 0.78438 0.97059 0.96084 0.90566 1.21926 1.01351 0.99185 0.96308 1.23137 0.96483 0.95816 0.99477 1.22537 0.93025 0.97533 0.87075 1.45915 1.24201 1.56408 1.09241 1.19104 1.00911 1.24111 0.90028 0.90489 1.25359 0.99394 1.00281 1.00157 1.69945 1.25760 1.36213 1.27294 0.85304 0.79014 0.76309 0.80087 1.21903 1.22288 1.19820 1.22172 0.87999 0.92326 0.94338 1.21340 0.95554 0.95864 0.93033 1.21442 0.93380 0.99435 1.08966 0.88235 0.91931 0.91715 0.90431 0.90802 0.83184 0.84600 0.75388 0.96206 0.93283 0.91822 0.87278 0.93453 0.92876 0.94586 0.96298 0.93005 0.83360 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 71.98 0.74 -0.39 16 2 C 0.04 0.42 5.45 71.98 0.39 0.82 16 3 O -0.32 -5.60 10.12 -90.31 -0.91 -6.52 16 4 C 0.15 2.93 6.70 22.64 0.15 3.08 16 5 C -0.17 -3.41 9.97 22.32 0.22 -3.19 16 6 C -0.03 -0.70 9.58 22.51 0.22 -0.49 16 7 C -0.19 -4.97 5.88 -20.08 -0.12 -5.09 16 8 C 0.56 18.16 7.73 86.72 0.67 18.83 16 9 O -0.59 -23.42 16.00 -3.96 -0.06 -23.49 16 10 N -0.71 -21.46 5.03 -445.65 -2.24 -23.70 16 11 C 0.19 6.56 2.76 44.99 0.12 6.68 16 12 H 0.08 2.79 7.58 -2.39 -0.02 2.77 16 13 C -0.13 -5.61 8.07 71.98 0.58 -5.02 16 14 C -0.13 -4.36 4.24 -10.37 -0.04 -4.40 16 15 C 0.12 4.70 7.85 83.18 0.65 5.35 16 16 N -0.63 -30.39 2.18 -737.98 -1.61 -32.00 16 17 C -0.21 -11.52 9.60 84.03 0.81 -10.72 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 20 N -0.94 -54.52 11.50 21.65 0.25 -54.27 16 21 Si 0.96 45.59 29.55 68.60 2.03 47.62 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.16 6.79 6.41 83.27 0.53 7.32 16 26 C -0.04 -0.79 9.53 22.50 0.21 -0.58 16 27 C -0.21 -3.68 9.01 22.33 0.20 -3.48 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.62 7.65 -2.39 -0.02 0.61 16 32 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.14 3.40 7.64 -2.91 -0.02 3.38 16 35 H 0.41 10.30 6.62 -92.71 -0.61 9.68 16 36 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.05 2.39 6.33 -2.39 -0.02 2.38 16 38 H 0.06 3.01 5.95 -2.39 -0.01 2.99 16 39 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 2.51 5.72 -2.39 -0.01 2.49 16 45 H 0.15 2.41 6.40 -2.91 -0.02 2.39 16 46 H 0.16 1.82 6.28 -2.91 -0.02 1.80 16 Total: -1.00 -69.91 371.40 3.64 -66.28 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.38 Total: 20.13 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.81 Total: 5.95 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.60 Total: -109.97 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.98 Total: -30.00 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.91 3.64 -66.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970816308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.527 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds