Wall clock time and date at job start Tue Mar 31 2020 11:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.46821 * 2 1 4 4 C 1.35913 * 116.99767 * 179.97438 * 3 2 1 5 5 C 1.38855 * 119.98108 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.23670 * 179.97438 * 5 4 3 7 7 C 1.38005 * 120.20509 * 359.74931 * 6 5 4 8 8 C 1.39563 * 119.96992 * 0.50216 * 7 6 5 9 9 C 1.47855 * 120.12448 * 179.77261 * 8 7 6 10 10 O 1.21546 * 120.00308 * 187.13091 * 9 8 7 11 11 N 1.34777 * 119.99714 * 7.12549 * 9 8 7 12 12 C 1.47422 * 125.65007 * 174.25213 * 11 9 8 13 13 C 1.54909 * 104.83584 * 155.82636 * 12 11 9 14 14 C 1.55152 * 101.58027 * 37.00523 * 13 12 11 15 15 H 1.09000 * 110.71816 * 83.04444 * 14 13 12 16 16 N 1.46502 * 110.72114 * 206.13291 * 14 13 12 17 17 C 1.46503 * 119.99733 * 60.00273 * 16 14 13 18 18 C 1.36939 * 120.00327 * 240.00685 * 16 14 13 19 19 H 1.08000 * 119.99407 * 334.66604 * 18 16 14 20 20 C 1.38803 * 119.99737 * 154.39739 * 18 16 14 21 21 N 1.31623 * 120.00539 * 354.44992 * 20 18 16 22 22 Si 1.86807 * 119.99692 * 174.45852 * 20 18 16 23 23 H 1.48497 * 109.47347 * 89.99558 * 22 20 18 24 24 H 1.48501 * 109.47192 * 209.99790 * 22 20 18 25 25 H 1.48500 * 109.46959 * 329.99205 * 22 20 18 26 26 C 1.47024 * 125.64812 * 354.19628 * 11 9 8 27 27 C 1.38447 * 119.98867 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47007 * 300.00254 * 1 2 3 30 30 H 1.09003 * 109.46993 * 59.99839 * 1 2 3 31 31 H 1.09002 * 109.46597 * 240.00401 * 2 1 3 32 32 H 1.08990 * 109.46854 * 120.00004 * 2 1 3 33 33 H 1.07999 * 119.88308 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.89654 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.01742 * 180.25793 * 7 6 5 36 36 H 1.09005 * 110.36717 * 36.98641 * 12 11 9 37 37 H 1.08998 * 110.46113 * 274.71187 * 12 11 9 38 38 H 1.09005 * 111.00110 * 278.93212 * 13 12 11 39 39 H 1.09000 * 111.03666 * 155.09852 * 13 12 11 40 40 H 1.08994 * 109.47100 * 274.55027 * 17 16 14 41 41 H 1.08999 * 109.46827 * 34.54945 * 17 16 14 42 42 H 1.09003 * 109.47078 * 154.54567 * 17 16 14 43 43 H 0.96998 * 120.00116 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.88427 * 61.68975 * 26 11 9 45 45 H 1.08999 * 109.88332 * 300.51688 * 26 11 9 46 46 H 1.08006 * 120.10026 * 0.04409 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4239 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1083 1.8699 -0.0046 8 6 5.2665 2.9831 0.0007 9 6 5.8389 4.3463 0.0002 10 8 5.1118 5.3109 0.1355 11 7 7.1671 4.5194 -0.1501 12 6 7.8543 5.8163 -0.2886 13 6 9.3041 5.5497 0.1877 14 6 9.5518 4.1174 -0.3547 15 1 9.8548 4.1485 -1.4013 16 7 10.5575 3.4237 0.4536 17 6 10.3239 3.2039 1.8831 18 6 11.7161 2.9808 -0.1269 19 1 11.7403 2.7604 -1.1839 20 6 12.8604 2.8207 0.6421 21 7 12.8639 3.1969 1.9034 22 14 14.3959 2.0712 -0.1132 23 1 15.2374 3.1476 -0.6948 24 1 15.1644 1.3544 0.9361 25 1 14.0064 1.1157 -1.1811 26 6 8.1706 3.4462 -0.2019 27 6 3.8827 2.8048 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7841 -0.5731 -0.0003 34 1 6.2231 -0.2617 0.0001 35 1 7.1801 2.0032 -0.0088 36 1 7.3793 6.5667 0.3434 37 1 7.8505 6.1403 -1.3293 38 1 9.3682 5.5720 1.2757 39 1 9.9992 6.2617 -0.2572 40 1 10.6424 4.0833 2.4427 41 1 9.2619 3.0288 2.0549 42 1 10.8936 2.3359 2.2151 43 1 13.6637 3.0853 2.4407 44 1 7.9767 2.7983 -1.0568 45 1 8.1406 2.8658 0.7202 46 1 3.2260 3.6624 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972429874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:49 Heat of formation + Delta-G solvation = 8.305000 kcal Electronic energy + Delta-G solvation = -26711.302034 eV Core-core repulsion = 22989.316535 eV Total energy + Delta-G solvation = -3721.985499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64135 -39.65910 -37.66598 -37.10883 -34.81315 -32.38888 -31.84800 -31.22879 -30.35070 -29.11801 -27.85983 -26.13946 -25.08110 -23.74237 -22.95828 -22.32075 -21.50675 -19.82378 -19.48453 -18.23772 -17.09735 -16.70296 -16.37045 -16.11891 -15.93550 -15.33720 -15.21551 -14.76237 -14.11832 -13.90240 -13.68323 -13.57346 -13.41750 -13.28347 -12.90930 -12.83738 -12.75469 -12.51885 -12.16166 -12.08081 -11.89067 -11.55965 -11.16987 -11.07589 -11.00394 -10.93272 -10.81134 -10.46624 -10.39499 -10.27744 -10.01403 -9.93893 -9.65785 -9.11523 -8.61522 -8.38333 -8.31995 -6.85269 -5.84505 -3.33206 0.80096 1.34911 2.82867 2.93783 3.28112 3.32031 3.39110 3.39816 3.84525 4.37013 4.52011 4.58222 4.58493 4.78472 4.83836 4.94080 5.02394 5.11673 5.20910 5.25832 5.30392 5.37550 5.43733 5.47354 5.49687 5.58537 5.68401 5.74898 5.84356 5.85213 5.94510 6.10930 6.14976 6.27801 6.33394 6.35365 6.46042 6.57307 6.63834 6.75913 6.84774 7.23214 7.31043 7.63034 7.72014 7.72816 8.29860 8.32275 9.12885 9.73205 10.22892 11.21421 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002922 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.979742 B = 9580.622456 C =10672.030071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.115 3.885 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.089 4.089 9 C 0.571 3.429 10 O -0.547 6.547 11 N -0.603 5.603 12 C 0.107 3.893 13 C -0.151 4.151 14 C 0.169 3.831 15 H 0.081 0.919 16 N -0.587 5.587 17 C 0.158 3.842 18 C -0.261 4.261 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.906 5.906 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.065 3.935 27 C -0.096 4.096 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.171 0.829 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.019 0.981 41 H -0.006 1.006 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 -6.200 -4.039 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.070 3.930 5 C -0.207 4.207 6 C -0.105 4.105 7 C -0.174 4.174 8 C -0.092 4.092 9 C 0.361 3.639 10 O -0.426 6.426 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.192 4.192 14 C 0.059 3.941 15 H 0.099 0.901 16 N -0.307 5.307 17 C 0.014 3.986 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.059 4.059 27 C -0.116 4.116 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.013 0.987 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.502 -5.598 -3.810 19.702 hybrid contribution 0.971 -0.684 -0.247 1.213 sum -17.531 -6.282 -4.058 19.060 Atomic orbital electron populations 1.21777 0.92733 1.02800 1.03615 1.22781 0.95900 0.82055 1.01394 1.86081 1.18822 1.29179 1.88941 1.18759 0.82409 0.93744 0.98051 1.21440 0.94633 0.97933 1.06671 1.20996 0.94128 0.97562 0.97833 1.22944 1.03434 0.91746 0.99316 1.19641 0.93050 0.93255 1.03263 1.17852 0.80740 0.88439 0.76913 1.90741 1.59065 1.41909 1.50896 1.48313 1.05151 1.09446 1.70672 1.22282 0.93109 0.85328 1.00837 1.23386 0.93226 1.00240 1.02339 1.21388 0.87121 0.89327 0.96271 0.90057 1.43878 1.17193 1.64110 1.05536 1.20865 0.93373 1.00871 0.83522 1.19218 0.86956 1.38601 0.94236 0.91201 1.25120 0.97597 1.00157 0.96403 1.70047 1.28109 1.50159 1.06719 0.86215 0.83076 0.78770 0.78186 1.21332 1.21603 1.20440 1.23297 0.90207 0.90668 1.01730 1.20407 0.93980 0.95348 1.01822 0.90392 0.91460 0.91490 0.92034 0.92004 0.85385 0.85011 0.81280 0.90873 0.91605 0.90593 0.90255 0.96298 0.98728 0.91611 0.93547 0.90859 0.89542 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.71 10.13 -19.47 -0.20 -3.91 16 4 C 0.12 1.47 6.68 -39.28 -0.26 1.21 16 5 C -0.19 -2.08 9.03 -39.35 -0.36 -2.44 16 6 C -0.09 -1.01 10.03 -39.66 -0.40 -1.41 16 7 C -0.16 -2.14 8.61 -39.17 -0.34 -2.48 16 8 C -0.09 -1.36 5.87 -104.99 -0.62 -1.98 16 9 C 0.57 9.93 7.81 -12.32 -0.10 9.83 16 10 O -0.55 -10.89 16.60 5.32 0.09 -10.80 16 11 N -0.60 -9.91 3.33 -175.92 -0.59 -10.49 16 12 C 0.11 1.66 6.94 -2.53 -0.02 1.65 16 13 C -0.15 -2.59 6.66 -24.59 -0.16 -2.75 16 14 C 0.17 3.13 3.45 -66.10 -0.23 2.90 16 15 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 16 N -0.59 -13.40 2.94 -171.39 -0.50 -13.90 16 17 C 0.16 3.63 7.95 59.85 0.48 4.11 16 18 C -0.26 -6.61 9.60 -15.06 -0.14 -6.76 16 19 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 20 C 0.01 0.16 5.19 -17.43 -0.09 0.07 16 21 N -0.91 -25.06 10.53 55.49 0.58 -24.47 16 22 Si 0.91 20.73 29.56 -169.99 -5.02 15.70 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.07 1.05 4.45 -3.06 -0.01 1.03 16 27 C -0.10 -1.40 9.53 -39.02 -0.37 -1.77 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.13 1.07 6.28 -52.49 -0.33 0.74 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.17 2.33 2.74 -58.04 -0.16 2.18 16 36 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.43 7.18 -51.93 -0.37 1.06 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.47 7.63 -51.93 -0.40 0.07 16 41 H -0.01 -0.11 6.05 -51.93 -0.31 -0.43 16 42 H 0.07 1.66 6.64 -51.93 -0.34 1.32 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 45 H 0.09 1.45 4.49 -51.93 -0.23 1.22 16 46 H 0.14 2.10 7.67 -52.48 -0.40 1.70 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -30.28 363.49 -8.80 -39.08 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.61 Total: 2.03 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.03 Total: 1.30 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.50 Total: -48.87 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.11 Total: -14.71 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.28 -8.80 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972429874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.381 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds