Wall clock time and date at job start Tue Mar 31 2020 11:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.46821 * 2 1 4 4 C 1.35913 * 116.99767 * 179.97438 * 3 2 1 5 5 C 1.38855 * 119.98108 * 0.02562 * 4 3 2 6 6 C 1.38246 * 120.23670 * 179.97438 * 5 4 3 7 7 C 1.38005 * 120.20509 * 359.74931 * 6 5 4 8 8 C 1.39563 * 119.96992 * 0.50216 * 7 6 5 9 9 C 1.47855 * 120.12448 * 179.77261 * 8 7 6 10 10 O 1.21546 * 120.00308 * 187.13091 * 9 8 7 11 11 N 1.34777 * 119.99714 * 7.12549 * 9 8 7 12 12 C 1.47422 * 125.65007 * 174.25213 * 11 9 8 13 13 C 1.54909 * 104.83584 * 155.82636 * 12 11 9 14 14 C 1.55152 * 101.58027 * 37.00523 * 13 12 11 15 15 H 1.09000 * 110.71816 * 83.04444 * 14 13 12 16 16 N 1.46502 * 110.72114 * 206.13291 * 14 13 12 17 17 C 1.46503 * 119.99733 * 60.00273 * 16 14 13 18 18 C 1.36939 * 120.00327 * 240.00685 * 16 14 13 19 19 H 1.08000 * 119.99407 * 334.66604 * 18 16 14 20 20 C 1.38803 * 119.99737 * 154.39739 * 18 16 14 21 21 N 1.31623 * 120.00539 * 354.44992 * 20 18 16 22 22 Si 1.86807 * 119.99692 * 174.45852 * 20 18 16 23 23 H 1.48497 * 109.47347 * 89.99558 * 22 20 18 24 24 H 1.48501 * 109.47192 * 209.99790 * 22 20 18 25 25 H 1.48500 * 109.46959 * 329.99205 * 22 20 18 26 26 C 1.47024 * 125.64812 * 354.19628 * 11 9 8 27 27 C 1.38447 * 119.98867 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47007 * 300.00254 * 1 2 3 30 30 H 1.09003 * 109.46993 * 59.99839 * 1 2 3 31 31 H 1.09002 * 109.46597 * 240.00401 * 2 1 3 32 32 H 1.08990 * 109.46854 * 120.00004 * 2 1 3 33 33 H 1.07999 * 119.88308 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.89654 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.01742 * 180.25793 * 7 6 5 36 36 H 1.09005 * 110.36717 * 36.98641 * 12 11 9 37 37 H 1.08998 * 110.46113 * 274.71187 * 12 11 9 38 38 H 1.09005 * 111.00110 * 278.93212 * 13 12 11 39 39 H 1.09000 * 111.03666 * 155.09852 * 13 12 11 40 40 H 1.08994 * 109.47100 * 274.55027 * 17 16 14 41 41 H 1.08999 * 109.46827 * 34.54945 * 17 16 14 42 42 H 1.09003 * 109.47078 * 154.54567 * 17 16 14 43 43 H 0.96998 * 120.00116 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.88427 * 61.68975 * 26 11 9 45 45 H 1.08999 * 109.88332 * 300.51688 * 26 11 9 46 46 H 1.08006 * 120.10026 * 0.04409 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1992 0.4239 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1083 1.8699 -0.0046 8 6 5.2665 2.9831 0.0007 9 6 5.8389 4.3463 0.0002 10 8 5.1118 5.3109 0.1355 11 7 7.1671 4.5194 -0.1501 12 6 7.8543 5.8163 -0.2886 13 6 9.3041 5.5497 0.1877 14 6 9.5518 4.1174 -0.3547 15 1 9.8548 4.1485 -1.4013 16 7 10.5575 3.4237 0.4536 17 6 10.3239 3.2039 1.8831 18 6 11.7161 2.9808 -0.1269 19 1 11.7403 2.7604 -1.1839 20 6 12.8604 2.8207 0.6421 21 7 12.8639 3.1969 1.9034 22 14 14.3959 2.0712 -0.1132 23 1 15.2374 3.1476 -0.6948 24 1 15.1644 1.3544 0.9361 25 1 14.0064 1.1157 -1.1811 26 6 8.1706 3.4462 -0.2019 27 6 3.8827 2.8048 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7841 -0.5731 -0.0003 34 1 6.2231 -0.2617 0.0001 35 1 7.1801 2.0032 -0.0088 36 1 7.3793 6.5667 0.3434 37 1 7.8505 6.1403 -1.3293 38 1 9.3682 5.5720 1.2757 39 1 9.9992 6.2617 -0.2572 40 1 10.6424 4.0833 2.4427 41 1 9.2619 3.0288 2.0549 42 1 10.8936 2.3359 2.2151 43 1 13.6637 3.0853 2.4407 44 1 7.9767 2.7983 -1.0568 45 1 8.1406 2.8658 0.7202 46 1 3.2260 3.6624 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972429874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:49 Heat of formation + Delta-G solvation = -8.728380 kcal Electronic energy + Delta-G solvation = -26712.040657 eV Core-core repulsion = 22989.316535 eV Total energy + Delta-G solvation = -3722.724122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78525 -40.73330 -39.03879 -38.18914 -36.52708 -33.54146 -32.97629 -32.55506 -31.43252 -30.37072 -29.23002 -28.04004 -26.25473 -24.97077 -24.12405 -23.46832 -22.58536 -21.06942 -20.94387 -19.29506 -18.88895 -17.87050 -17.49100 -17.08978 -17.05555 -16.71414 -16.33273 -16.26390 -15.66635 -15.07555 -14.98933 -14.82303 -14.46692 -14.39754 -14.30832 -14.16816 -13.95594 -13.43739 -13.33169 -13.06150 -12.91919 -12.86733 -12.79701 -12.63412 -12.48179 -12.28708 -12.04682 -11.93782 -11.84519 -11.75679 -11.65039 -11.41537 -11.06075 -10.56748 -10.15825 -9.68162 -9.29737 -8.73407 -7.81507 -5.31121 -0.25944 0.36386 1.52237 1.53392 1.61673 1.72523 1.77305 2.27375 2.54007 2.77359 3.29932 3.34622 3.66614 3.72553 3.78122 3.92921 4.01502 4.07527 4.12636 4.20154 4.27480 4.29250 4.33613 4.38282 4.41634 4.49407 4.58327 4.77335 4.79165 4.91658 4.94794 4.95080 4.95936 5.10140 5.13436 5.19951 5.26718 5.30476 5.36338 5.38420 5.40319 5.64218 5.68381 5.77879 6.33863 6.38769 6.42362 6.97563 7.18146 7.86517 8.32225 9.23385 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002922 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.979742 B = 9580.622456 C =10672.030071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.334 6.334 4 C 0.115 3.885 5 C -0.175 4.175 6 C -0.082 4.082 7 C -0.162 4.162 8 C -0.107 4.107 9 C 0.567 3.433 10 O -0.581 6.581 11 N -0.604 5.604 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.163 3.837 15 H 0.090 0.910 16 N -0.599 5.599 17 C 0.176 3.824 18 C -0.260 4.260 19 H 0.080 0.920 20 C -0.050 4.050 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.289 1.289 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.080 3.920 27 C -0.116 4.116 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.085 0.915 40 H -0.009 1.009 41 H 0.021 0.979 42 H 0.039 0.961 43 H 0.247 0.753 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.011 -8.503 -5.511 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.248 6.248 4 C 0.069 3.931 5 C -0.194 4.194 6 C -0.100 4.100 7 C -0.180 4.180 8 C -0.110 4.110 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.335 5.335 12 C -0.010 4.010 13 C -0.183 4.183 14 C 0.054 3.946 15 H 0.108 0.892 16 N -0.320 5.320 17 C 0.031 3.969 18 C -0.390 4.390 19 H 0.097 0.903 20 C -0.245 4.245 21 N -0.586 5.586 22 Si 0.798 3.202 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.190 1.190 26 C -0.043 4.043 27 C -0.136 4.136 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.009 0.991 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.471 -7.906 -5.317 21.677 hybrid contribution 1.123 -0.006 0.188 1.139 sum -18.348 -7.912 -5.129 20.629 Atomic orbital electron populations 1.21821 0.91626 1.04264 1.03055 1.23150 0.96887 0.80425 1.02732 1.86082 1.18222 1.31842 1.88698 1.18815 0.83294 0.93482 0.97471 1.21795 0.94221 0.98885 1.04473 1.21342 0.94844 0.97507 0.96290 1.22912 1.03006 0.92189 0.99846 1.19518 0.93530 0.92526 1.05401 1.18246 0.80640 0.89106 0.76151 1.90712 1.59773 1.43204 1.52652 1.48352 1.05099 1.09749 1.70338 1.22282 0.91705 0.85137 1.01918 1.23227 0.94474 0.99620 1.00945 1.21574 0.87195 0.89780 0.96034 0.89172 1.44006 1.17548 1.64918 1.05560 1.20543 0.94258 0.98400 0.83720 1.19594 0.87538 1.37247 0.94597 0.90260 1.25839 1.00373 1.01449 0.96855 1.70220 1.28326 1.52085 1.07953 0.85245 0.79714 0.77950 0.77329 1.21564 1.22538 1.19042 1.23133 0.88471 0.90308 1.02436 1.20373 0.93736 0.96064 1.03396 0.87872 0.92113 0.92005 0.90494 0.90668 0.81986 0.82101 0.81553 0.91207 0.89539 0.92687 0.89656 0.99066 0.96104 0.94254 0.94345 0.88694 0.90071 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.54 5.46 71.98 0.39 0.94 16 3 O -0.33 -7.35 10.13 -92.57 -0.94 -8.29 16 4 C 0.11 2.75 6.68 22.47 0.15 2.90 16 5 C -0.18 -3.29 9.03 22.42 0.20 -3.08 16 6 C -0.08 -1.63 10.03 22.22 0.22 -1.41 16 7 C -0.16 -4.10 8.61 22.53 0.19 -3.91 16 8 C -0.11 -3.22 5.87 -20.10 -0.12 -3.34 16 9 C 0.57 19.76 7.81 86.79 0.68 20.44 16 10 O -0.58 -23.68 16.60 -3.86 -0.06 -23.74 16 11 N -0.60 -19.35 3.33 -828.76 -2.76 -22.10 16 12 C 0.11 3.39 6.94 86.86 0.60 3.99 16 13 C -0.14 -4.79 6.66 31.98 0.21 -4.58 16 14 C 0.16 5.81 3.45 46.18 0.16 5.97 16 15 H 0.09 3.08 7.94 -2.39 -0.02 3.06 16 16 N -0.60 -27.07 2.94 -696.16 -2.04 -29.12 16 17 C 0.18 8.16 7.95 127.77 1.02 9.18 16 18 C -0.26 -12.97 9.60 84.03 0.81 -12.16 16 19 H 0.08 3.75 7.82 -2.91 -0.02 3.73 16 20 C -0.05 -2.63 5.19 84.86 0.44 -2.19 16 21 N -0.94 -52.99 10.53 21.65 0.23 -52.76 16 22 Si 0.97 42.50 29.56 68.60 2.03 44.53 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 C 0.08 2.45 4.45 86.73 0.39 2.84 16 27 C -0.12 -3.39 9.53 22.63 0.22 -3.17 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.76 7.66 -2.39 -0.02 0.74 16 32 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 33 H 0.16 1.90 6.28 -2.91 -0.02 1.88 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.17 4.24 2.74 -8.13 -0.02 4.22 16 36 H 0.07 2.19 7.98 -2.38 -0.02 2.17 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 2.09 7.18 -2.38 -0.02 2.07 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H -0.01 -0.47 7.63 -2.39 -0.02 -0.48 16 41 H 0.02 0.84 6.05 -2.39 -0.01 0.83 16 42 H 0.04 2.01 6.64 -2.39 -0.02 2.00 16 43 H 0.25 13.71 8.31 -92.71 -0.77 12.93 16 44 H 0.10 2.54 6.74 -2.39 -0.02 2.53 16 45 H 0.08 2.61 4.49 -2.39 -0.01 2.60 16 46 H 0.12 3.92 7.67 -2.91 -0.02 3.89 16 Total: -1.00 -66.47 363.49 3.73 -62.74 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.98 Total: 17.07 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 6.30 Total: 11.67 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.57 Total: -103.98 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.00 Total: -32.03 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.47 3.73 -62.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972429874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.014 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds