Wall clock time and date at job start Tue Mar 31 2020 12:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99676 * 2 1 4 4 N 1.34768 * 120.00129 * 179.97438 * 2 1 3 5 5 C 1.46507 * 120.00212 * 180.02562 * 4 2 1 6 6 H 1.08994 * 112.84467 * 25.33157 * 5 4 2 7 7 C 1.53780 * 113.61683 * 156.53039 * 5 4 2 8 8 C 1.53778 * 87.08137 * 89.11366 * 7 5 4 9 9 H 1.08996 * 113.61469 * 270.79527 * 8 7 5 10 10 C 1.53000 * 113.61132 * 139.98093 * 8 7 5 11 11 N 1.46911 * 109.47052 * 175.00089 * 10 8 7 12 12 C 1.46902 * 110.99930 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46925 * 179.97438 * 12 11 10 14 14 C 1.38299 * 119.93202 * 269.72735 * 13 12 11 15 15 C 1.38097 * 120.07270 * 179.72571 * 14 13 12 16 16 C 1.38880 * 119.92221 * 0.54561 * 15 14 13 17 17 O 1.35763 * 120.06498 * 179.74548 * 16 15 14 18 18 C 1.34829 * 116.99634 * 174.44530 * 17 16 15 19 19 H 1.07999 * 120.00127 * 5.05593 * 18 17 16 20 20 C 1.38654 * 119.99621 * 185.06023 * 18 17 16 21 21 N 1.31560 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47160 * 89.99973 * 22 20 18 24 24 H 1.48497 * 109.46934 * 209.99844 * 22 20 18 25 25 H 1.48500 * 109.46990 * 329.99448 * 22 20 18 26 26 C 1.38879 * 119.86667 * 359.73064 * 16 15 14 27 27 C 1.38099 * 119.93007 * 359.97438 * 26 16 15 28 28 C 1.53783 * 113.61101 * 254.13513 * 5 4 2 29 29 H 1.09001 * 109.46847 * 240.00047 * 1 2 3 30 30 H 1.08999 * 109.47159 * 120.00457 * 1 2 3 31 31 H 1.08997 * 109.47451 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00051 * 0.02562 * 4 2 1 33 33 H 1.09003 * 113.61120 * 203.66409 * 7 5 4 34 34 H 1.09005 * 113.61430 * 334.48150 * 7 5 4 35 35 H 1.08998 * 109.47064 * 294.99956 * 10 8 7 36 36 H 1.09003 * 109.47431 * 55.00284 * 10 8 7 37 37 H 1.00896 * 110.99796 * 56.04300 * 11 10 8 38 38 H 1.09003 * 109.46523 * 299.99969 * 12 11 10 39 39 H 1.08998 * 109.47067 * 59.99729 * 12 11 10 40 40 H 1.07999 * 119.96387 * 0.02562 * 14 13 12 41 41 H 1.07999 * 120.03898 * 180.27168 * 15 14 13 42 42 H 0.96998 * 119.99988 * 180.02562 * 21 20 18 43 43 H 1.08006 * 120.03346 * 180.02562 * 26 16 15 44 44 H 1.08001 * 119.96015 * 179.97438 * 27 26 16 45 45 H 1.08998 * 113.61415 * 25.43631 * 28 5 4 46 46 H 1.09002 * 113.61107 * 156.33034 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 1 4.0690 -0.2592 0.4308 7 6 4.2618 -2.4594 0.5628 8 6 4.2092 -3.0143 -0.8705 9 1 3.2738 -3.5206 -1.1086 10 6 5.4429 -3.8329 -1.2563 11 7 5.2462 -4.4156 -2.5905 12 6 6.4137 -5.2099 -2.9954 13 6 6.1755 -5.7908 -4.3654 14 6 5.5817 -7.0331 -4.4944 15 6 5.3568 -7.5657 -5.7486 16 6 5.7380 -6.8572 -6.8806 17 8 5.5230 -7.3804 -8.1148 18 6 5.8104 -6.5938 -9.1715 19 1 6.2692 -5.6284 -9.0171 20 6 5.5167 -7.0244 -10.4564 21 7 4.9581 -8.2006 -10.6444 22 14 5.9155 -5.9350 -11.9205 23 1 7.2883 -6.2345 -12.4010 24 1 4.9416 -6.1953 -13.0109 25 1 5.8334 -4.5092 -11.5135 26 6 6.3392 -5.6124 -6.7475 27 6 6.5558 -5.0827 -5.4907 28 6 4.2624 -1.5526 -1.3540 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 1.6959 -2.0072 0.0005 33 1 5.2747 -2.3305 0.9442 34 1 3.6106 -2.9861 1.2605 35 1 6.3195 -3.1852 -1.2684 36 1 5.5910 -4.6315 -0.5294 37 1 5.0427 -3.6994 -3.2714 38 1 7.2968 -4.5713 -3.0196 39 1 6.5691 -6.0179 -2.2805 40 1 5.2891 -7.5853 -3.6136 41 1 4.8891 -8.5340 -5.8488 42 1 4.7531 -8.5020 -11.5432 43 1 6.6364 -5.0589 -7.6261 44 1 7.0237 -4.1148 -5.3867 45 1 3.6113 -1.3483 -2.2039 46 1 5.2755 -1.1762 -1.4957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982941804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:10 Heat of formation + Delta-G solvation = -26.204295 kcal Electronic energy + Delta-G solvation = -24988.018247 eV Core-core repulsion = 21264.536312 eV Total energy + Delta-G solvation = -3723.481935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56980 -39.10261 -38.71119 -37.00155 -35.26827 -33.55822 -32.29578 -30.51711 -30.15556 -29.62339 -26.99558 -26.07388 -25.40295 -23.78140 -22.30751 -21.92867 -21.31531 -20.42548 -19.47955 -17.98517 -17.34726 -17.01717 -16.44681 -15.98737 -15.61751 -15.19652 -14.98229 -14.56047 -14.48455 -14.24237 -14.03042 -13.61952 -13.58232 -13.49015 -13.27592 -12.89822 -12.80262 -12.69524 -12.57504 -12.38290 -12.15473 -11.81787 -11.56005 -11.32408 -11.15845 -10.96689 -10.75596 -10.64386 -10.52510 -10.44055 -10.33394 -10.23114 -9.39156 -9.33506 -8.84238 -8.38263 -8.16604 -7.18328 -6.45511 -4.04380 2.22849 2.27258 2.28682 2.80818 3.11995 3.13136 3.17910 3.96065 4.05253 4.14591 4.39619 4.42870 4.52709 4.59314 4.78746 4.86378 4.97332 5.09135 5.14596 5.25611 5.28561 5.32652 5.37209 5.37549 5.40036 5.48071 5.50994 5.60544 5.72631 5.73159 5.82414 5.83876 5.91124 5.95247 6.21708 6.27807 6.43103 6.71110 6.90088 7.02148 7.09617 7.13124 7.26993 7.35168 7.43531 7.48804 7.83438 7.86607 7.99570 9.00157 9.70511 10.72505 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.002032 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.141684 B =13775.972544 C =14814.926738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.713 5.713 5 C 0.118 3.882 6 H 0.099 0.901 7 C -0.139 4.139 8 C -0.106 4.106 9 H 0.099 0.901 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.118 3.882 13 C -0.185 4.185 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.235 4.235 27 C -0.066 4.066 28 C -0.150 4.150 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.403 0.597 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.342 0.658 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 11.237 21.917 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.424 6.424 4 N -0.365 5.365 5 C 0.012 3.988 6 H 0.117 0.883 7 C -0.178 4.178 8 C -0.124 4.124 9 H 0.117 0.883 10 C -0.062 4.062 11 N -0.315 5.315 12 C -0.010 4.010 13 C -0.186 4.186 14 C -0.071 4.071 15 C -0.214 4.214 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.254 4.254 27 C -0.085 4.085 28 C -0.189 4.189 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.237 0.763 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.182 11.096 21.877 24.884 hybrid contribution 0.642 0.796 -1.059 1.473 sum -3.539 11.892 20.817 24.234 Atomic orbital electron populations 1.21931 0.91477 1.05655 1.04416 1.20860 0.90669 0.83421 0.75114 1.90729 1.70907 1.31450 1.49350 1.45751 1.06493 1.08866 1.75393 1.21816 0.80124 0.99361 0.97464 0.88274 1.23327 1.01821 0.95758 0.96898 1.22678 0.99863 0.94651 0.95247 0.88303 1.21941 0.95328 0.96923 0.92043 1.60591 1.39470 1.28198 1.03290 1.20615 0.90173 0.96112 0.94129 1.19111 1.09181 0.97036 0.93272 1.20460 0.96437 0.94542 0.95684 1.20228 1.08781 1.01863 0.90512 1.19408 0.92154 0.91418 0.86853 1.83983 1.73891 1.40100 1.10163 1.21318 1.41461 1.00871 0.83141 0.89107 1.25292 0.96353 0.96909 0.98001 1.70039 1.38897 1.18075 1.22737 0.85715 0.78475 0.79409 0.79849 1.19892 1.20239 1.19220 1.21120 1.08441 0.98207 0.97620 1.20588 0.98003 0.97853 0.92046 1.23564 1.01636 0.96091 0.97623 0.89354 0.89175 0.88923 0.76260 0.88769 0.90801 0.95427 0.91111 0.84049 0.95560 0.91216 0.87080 0.86570 0.92025 0.85661 0.87980 0.90934 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.51 4.49 7.94 -10.99 -0.09 4.40 16 3 O -0.55 -7.39 16.71 5.56 0.09 -7.29 16 4 N -0.71 -4.88 5.26 -53.01 -0.28 -5.16 16 5 C 0.12 0.90 4.30 -67.11 -0.29 0.62 16 6 H 0.10 0.92 7.50 -51.93 -0.39 0.53 16 7 C -0.14 -0.84 7.38 -25.92 -0.19 -1.03 16 8 C -0.11 -0.79 3.79 -89.67 -0.34 -1.13 16 9 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 10 C 0.07 0.60 5.52 -3.82 -0.02 0.58 16 11 N -0.68 -8.05 6.49 -115.05 -0.75 -8.80 16 12 C 0.12 1.54 5.81 -4.98 -0.03 1.51 16 13 C -0.18 -3.09 5.40 -104.58 -0.56 -3.65 16 14 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 15 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 16 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 17 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 18 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 19 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 22 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 27 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 28 C -0.15 -1.22 7.45 -25.78 -0.19 -1.41 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.40 1.77 8.70 -40.82 -0.36 1.42 16 33 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.24 7.85 -51.93 -0.41 -0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.34 4.15 8.72 -39.29 -0.34 3.81 16 38 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 39 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 44 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -33.22 386.08 -9.40 -42.63 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.10 Total: 6.58 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.93 Total: -19.63 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.27 Total: -38.50 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.22 -9.40 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982941804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.422 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds