Wall clock time and date at job start Tue Mar 31 2020 12:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21280 * 119.99676 * 2 1 4 4 N 1.34768 * 120.00129 * 179.97438 * 2 1 3 5 5 C 1.46507 * 120.00212 * 180.02562 * 4 2 1 6 6 H 1.08994 * 112.84467 * 25.33157 * 5 4 2 7 7 C 1.53780 * 113.61683 * 156.53039 * 5 4 2 8 8 C 1.53778 * 87.08137 * 89.11366 * 7 5 4 9 9 H 1.08996 * 113.61469 * 270.79527 * 8 7 5 10 10 C 1.53000 * 113.61132 * 139.98093 * 8 7 5 11 11 N 1.46911 * 109.47052 * 175.00089 * 10 8 7 12 12 C 1.46902 * 110.99930 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46925 * 179.97438 * 12 11 10 14 14 C 1.38299 * 119.93202 * 269.72735 * 13 12 11 15 15 C 1.38097 * 120.07270 * 179.72571 * 14 13 12 16 16 C 1.38880 * 119.92221 * 0.54561 * 15 14 13 17 17 O 1.35763 * 120.06498 * 179.74548 * 16 15 14 18 18 C 1.34829 * 116.99634 * 174.44530 * 17 16 15 19 19 H 1.07999 * 120.00127 * 5.05593 * 18 17 16 20 20 C 1.38654 * 119.99621 * 185.06023 * 18 17 16 21 21 N 1.31560 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47160 * 89.99973 * 22 20 18 24 24 H 1.48497 * 109.46934 * 209.99844 * 22 20 18 25 25 H 1.48500 * 109.46990 * 329.99448 * 22 20 18 26 26 C 1.38879 * 119.86667 * 359.73064 * 16 15 14 27 27 C 1.38099 * 119.93007 * 359.97438 * 26 16 15 28 28 C 1.53783 * 113.61101 * 254.13513 * 5 4 2 29 29 H 1.09001 * 109.46847 * 240.00047 * 1 2 3 30 30 H 1.08999 * 109.47159 * 120.00457 * 1 2 3 31 31 H 1.08997 * 109.47451 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00051 * 0.02562 * 4 2 1 33 33 H 1.09003 * 113.61120 * 203.66409 * 7 5 4 34 34 H 1.09005 * 113.61430 * 334.48150 * 7 5 4 35 35 H 1.08998 * 109.47064 * 294.99956 * 10 8 7 36 36 H 1.09003 * 109.47431 * 55.00284 * 10 8 7 37 37 H 1.00896 * 110.99796 * 56.04300 * 11 10 8 38 38 H 1.09003 * 109.46523 * 299.99969 * 12 11 10 39 39 H 1.08998 * 109.47067 * 59.99729 * 12 11 10 40 40 H 1.07999 * 119.96387 * 0.02562 * 14 13 12 41 41 H 1.07999 * 120.03898 * 180.27168 * 15 14 13 42 42 H 0.96998 * 119.99988 * 180.02562 * 21 20 18 43 43 H 1.08006 * 120.03346 * 180.02562 * 26 16 15 44 44 H 1.08001 * 119.96015 * 179.97438 * 27 26 16 45 45 H 1.08998 * 113.61415 * 25.43631 * 28 5 4 46 46 H 1.09002 * 113.61107 * 156.33034 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 1 4.0690 -0.2592 0.4308 7 6 4.2618 -2.4594 0.5628 8 6 4.2092 -3.0143 -0.8705 9 1 3.2738 -3.5206 -1.1086 10 6 5.4429 -3.8329 -1.2563 11 7 5.2462 -4.4156 -2.5905 12 6 6.4137 -5.2099 -2.9954 13 6 6.1755 -5.7908 -4.3654 14 6 5.5817 -7.0331 -4.4944 15 6 5.3568 -7.5657 -5.7486 16 6 5.7380 -6.8572 -6.8806 17 8 5.5230 -7.3804 -8.1148 18 6 5.8104 -6.5938 -9.1715 19 1 6.2692 -5.6284 -9.0171 20 6 5.5167 -7.0244 -10.4564 21 7 4.9581 -8.2006 -10.6444 22 14 5.9155 -5.9350 -11.9205 23 1 7.2883 -6.2345 -12.4010 24 1 4.9416 -6.1953 -13.0109 25 1 5.8334 -4.5092 -11.5135 26 6 6.3392 -5.6124 -6.7475 27 6 6.5558 -5.0827 -5.4907 28 6 4.2624 -1.5526 -1.3540 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 1.6959 -2.0072 0.0005 33 1 5.2747 -2.3305 0.9442 34 1 3.6106 -2.9861 1.2605 35 1 6.3195 -3.1852 -1.2684 36 1 5.5910 -4.6315 -0.5294 37 1 5.0427 -3.6994 -3.2714 38 1 7.2968 -4.5713 -3.0196 39 1 6.5691 -6.0179 -2.2805 40 1 5.2891 -7.5853 -3.6136 41 1 4.8891 -8.5340 -5.8488 42 1 4.7531 -8.5020 -11.5432 43 1 6.6364 -5.0589 -7.6261 44 1 7.0237 -4.1148 -5.3867 45 1 3.6113 -1.3483 -2.2039 46 1 5.2755 -1.1762 -1.4957 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982941804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:09 Heat of formation + Delta-G solvation = -49.585980 kcal Electronic energy + Delta-G solvation = -24989.032153 eV Core-core repulsion = 21264.536312 eV Total energy + Delta-G solvation = -3724.495841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22014 -40.77063 -39.47408 -38.56236 -36.35501 -34.42887 -34.14673 -31.79996 -31.54281 -30.39628 -28.10492 -27.21836 -26.63966 -24.94858 -23.60445 -22.98858 -22.01859 -21.86325 -20.12848 -19.83117 -18.85872 -17.96847 -17.13683 -16.92160 -16.45424 -16.32521 -16.25733 -15.96523 -15.77350 -15.47938 -15.27856 -15.03256 -14.88196 -14.39098 -14.28252 -14.02428 -13.86192 -13.62630 -13.42310 -13.32920 -13.08431 -12.97132 -12.94625 -12.56460 -12.45716 -12.26783 -12.15667 -12.08047 -11.75125 -11.35114 -11.16572 -11.05572 -10.96180 -10.78726 -10.03897 -9.76292 -9.29547 -8.88296 -8.47028 -6.15103 0.61948 0.69494 1.34541 1.43735 1.52015 1.61854 2.17551 2.26342 2.79438 3.11110 3.43375 3.54031 3.56803 3.79451 3.88540 3.96569 3.99930 4.09086 4.09631 4.23308 4.47510 4.49719 4.54010 4.63421 4.66812 4.68475 4.77740 4.79511 4.82145 4.85992 4.88602 4.93067 5.08246 5.11205 5.12843 5.15989 5.21883 5.32789 5.34953 5.59264 5.68017 5.72729 5.83303 6.03451 6.16472 6.27955 6.50966 6.57890 6.97724 7.26900 7.79231 8.76239 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.002032 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.141684 B =13775.972544 C =14814.926738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.504 3.496 3 O -0.604 6.604 4 N -0.702 5.702 5 C 0.111 3.889 6 H 0.079 0.921 7 C -0.122 4.122 8 C -0.097 4.097 9 H 0.097 0.903 10 C 0.069 3.931 11 N -0.693 5.693 12 C 0.121 3.879 13 C -0.157 4.157 14 C -0.047 4.047 15 C -0.206 4.206 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.244 4.244 27 C -0.064 4.064 28 C -0.152 4.152 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.417 0.583 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.339 0.661 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.272 0.728 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.056 0.944 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 12.413 24.631 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.485 6.485 4 N -0.354 5.354 5 C 0.005 3.995 6 H 0.097 0.903 7 C -0.160 4.160 8 C -0.116 4.116 9 H 0.115 0.885 10 C -0.059 4.059 11 N -0.324 5.324 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.066 4.066 15 C -0.225 4.225 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.178 1.178 26 C -0.263 4.263 27 C -0.083 4.083 28 C -0.190 4.190 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.254 0.746 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.075 0.925 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.860 12.252 24.663 27.808 hybrid contribution 0.571 0.491 -1.513 1.690 sum -3.289 12.743 23.150 26.630 Atomic orbital electron populations 1.21937 0.88337 1.05956 1.06446 1.21607 0.92269 0.82916 0.73894 1.90702 1.72256 1.33408 1.52163 1.45708 1.06344 1.09161 1.74176 1.21824 0.80633 0.99540 0.97518 0.90280 1.23251 1.02495 0.94033 0.96247 1.22579 0.99271 0.93654 0.96073 0.88510 1.21994 0.96085 0.97344 0.90498 1.60549 1.38756 1.28582 1.04466 1.20616 0.91272 0.97081 0.91714 1.19650 1.05171 0.95859 0.95087 1.20858 0.95365 0.95110 0.95229 1.20485 1.08968 1.01870 0.91219 1.19961 0.94153 0.93254 0.86415 1.83944 1.76748 1.41720 1.11617 1.21799 1.41831 1.01429 0.83826 0.88218 1.26592 0.96039 0.98507 1.01023 1.70185 1.41626 1.20535 1.23550 0.84588 0.78584 0.77667 0.75377 1.18786 1.19553 1.17763 1.21225 1.08542 0.97456 0.99109 1.20945 0.97368 0.99135 0.90831 1.23564 1.01383 0.96943 0.97152 0.86765 0.87433 0.89578 0.74571 0.87786 0.89346 0.94734 0.90200 0.84377 0.94034 0.89578 0.83656 0.87029 0.91855 0.86601 0.84649 0.92535 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.32 71.24 0.74 -0.56 16 2 C 0.50 8.41 7.94 87.66 0.70 9.11 16 3 O -0.60 -16.62 16.71 -3.03 -0.05 -16.67 16 4 N -0.70 -8.44 5.26 -440.04 -2.32 -10.76 16 5 C 0.11 1.53 4.30 45.52 0.20 1.73 16 6 H 0.08 1.45 7.50 -2.39 -0.02 1.43 16 7 C -0.12 -1.08 7.38 31.12 0.23 -0.85 16 8 C -0.10 -1.14 3.79 -10.18 -0.04 -1.17 16 9 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 10 C 0.07 0.95 5.52 86.30 0.48 1.43 16 11 N -0.69 -13.42 6.49 -517.90 -3.36 -16.78 16 12 C 0.12 2.58 5.81 85.56 0.50 3.08 16 13 C -0.16 -4.70 5.40 -19.84 -0.11 -4.80 16 14 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 15 C -0.21 -8.82 9.99 22.39 0.22 -8.60 16 16 C 0.11 5.65 6.65 22.58 0.15 5.80 16 17 O -0.23 -14.22 9.76 -22.87 -0.22 -14.44 16 18 C -0.41 -24.26 9.49 67.92 0.64 -23.62 16 19 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 21 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 22 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 26 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 27 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 28 C -0.15 -2.19 7.45 31.21 0.23 -1.96 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 32 H 0.42 2.57 8.70 -92.71 -0.81 1.77 16 33 H 0.10 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.03 0.45 7.85 -2.39 -0.02 0.44 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.34 7.03 8.72 -89.70 -0.78 6.25 16 38 H 0.04 0.81 8.09 -2.39 -0.02 0.79 16 39 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 40 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 41 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 44 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.09 1.27 7.90 -2.39 -0.02 1.25 16 Total: -1.00 -78.57 386.08 0.82 -77.75 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.59 Total: 27.41 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 5.04 Total: -35.09 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -5.38 Total: -84.15 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.27 Total: -31.12 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -78.57 0.82 -77.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982941804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.167 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds