Wall clock time and date at job start Tue Mar 31 2020 12:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47209 * 2 1 4 4 C 1.35710 * 116.99946 * 179.97438 * 3 2 1 5 5 C 1.39002 * 119.91018 * 179.97438 * 4 3 2 6 6 C 1.37701 * 120.08290 * 180.02562 * 5 4 3 7 7 C 1.39730 * 119.91661 * 359.97438 * 6 5 4 8 8 C 1.47604 * 120.08978 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00147 * 17.13121 * 8 7 6 10 10 N 1.34775 * 119.99784 * 197.12749 * 8 7 6 11 11 C 1.47428 * 125.64466 * 173.71054 * 10 8 7 12 12 C 1.54908 * 104.82983 * 155.91895 * 11 10 8 13 13 H 1.09004 * 111.03539 * 155.09936 * 12 11 10 14 14 N 1.46498 * 111.00665 * 278.93581 * 12 11 10 15 15 C 1.36938 * 119.99989 * 267.19879 * 14 12 11 16 16 H 1.07998 * 119.99854 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00161 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00316 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99816 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47083 * 90.00217 * 19 17 15 21 21 H 1.48497 * 109.47011 * 210.00618 * 19 17 15 22 22 H 1.48502 * 109.46924 * 330.00650 * 19 17 15 23 23 C 1.55152 * 101.57976 * 37.01393 * 12 11 10 24 24 C 1.47013 * 125.65181 * 353.77190 * 10 8 7 25 25 H 1.09005 * 109.88046 * 300.42245 * 24 10 8 26 26 C 1.52999 * 109.88477 * 61.59053 * 24 10 8 27 27 C 1.39737 * 119.82148 * 0.27272 * 7 6 5 28 28 C 1.37702 * 119.90875 * 359.47384 * 27 7 6 29 29 H 1.09003 * 109.47438 * 300.00177 * 1 2 3 30 30 H 1.09008 * 109.46898 * 59.99989 * 1 2 3 31 31 H 1.08993 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46958 * 239.99303 * 2 1 3 33 33 H 1.08999 * 109.46299 * 119.99917 * 2 1 3 34 34 H 1.07997 * 119.95414 * 0.02562 * 5 4 3 35 35 H 1.08002 * 120.04154 * 179.97438 * 6 5 4 36 36 H 1.08999 * 110.36801 * 37.08171 * 11 10 8 37 37 H 1.08996 * 110.46057 * 274.80529 * 11 10 8 38 38 H 0.97002 * 119.99716 * 87.19617 * 14 12 11 39 39 H 0.97004 * 120.00162 * 179.97438 * 18 17 15 40 40 H 1.09001 * 110.72408 * 82.86313 * 23 12 11 41 41 H 1.09010 * 110.72055 * 206.13042 * 23 12 11 42 42 H 1.09001 * 109.47086 * 195.57635 * 26 24 10 43 43 H 1.08999 * 109.46847 * 315.57538 * 26 24 10 44 44 H 1.08994 * 109.46978 * 75.57830 * 26 24 10 45 45 H 1.08002 * 120.04006 * 179.72907 * 27 7 6 46 46 H 1.08002 * 119.95164 * 180.24684 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 3.8811 2.8103 0.0000 6 6 5.2457 2.9948 0.0000 7 6 6.0986 1.8880 0.0011 8 6 7.5619 2.0813 0.0017 9 8 8.0326 3.1587 0.3114 10 7 8.3762 1.0636 -0.3410 11 6 9.8381 1.1523 -0.5096 12 6 10.3520 -0.2910 -0.2803 13 1 11.3041 -0.4523 -0.7860 14 7 10.4634 -0.5877 1.1500 15 6 11.6504 -0.3831 1.8013 16 1 12.5046 -0.0033 1.2604 17 6 11.7562 -0.6648 3.1564 18 7 12.8969 -0.4677 3.7825 19 14 10.2788 -1.3224 4.0917 20 1 10.2787 -2.8063 4.0368 21 1 10.3519 -0.8793 5.5071 22 1 9.0315 -0.8041 3.4745 23 6 9.2245 -1.1309 -0.9365 24 6 7.9537 -0.3186 -0.6100 25 1 7.4640 -0.7345 0.2706 26 6 6.9968 -0.3474 -1.8035 27 6 5.5624 0.5976 -0.0036 28 6 4.1967 0.4214 0.0017 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2212 3.6652 -0.0004 35 1 5.6562 3.9937 -0.0008 36 1 10.2649 1.8290 0.2306 37 1 10.0859 1.4877 -1.5167 38 1 9.6962 -0.9291 1.6356 39 1 12.9707 -0.6642 4.7296 40 1 9.3721 -1.1995 -2.0143 41 1 9.1732 -2.1238 -0.4893 42 1 6.4767 -1.3050 -1.8292 43 1 6.2695 0.4585 -1.7055 44 1 7.5624 -0.2163 -2.7259 45 1 6.2184 -0.2604 -0.0072 46 1 3.7816 -0.5756 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989740543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:02 Heat of formation + Delta-G solvation = -16.407418 kcal Electronic energy + Delta-G solvation = -27207.092088 eV Core-core repulsion = 23484.034978 eV Total energy + Delta-G solvation = -3723.057110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06382 -40.79820 -39.05150 -38.25140 -36.20530 -33.98738 -33.00848 -32.56863 -31.88669 -31.37713 -29.85278 -27.04848 -25.68783 -24.99335 -24.50135 -23.20501 -22.51428 -21.58265 -20.55794 -19.82379 -19.21786 -18.47160 -17.53444 -17.08769 -16.90855 -16.45161 -16.27272 -16.08095 -15.88962 -15.27108 -14.98918 -14.71027 -14.67458 -14.42871 -14.22721 -14.09838 -13.88018 -13.62747 -13.53784 -13.28891 -13.07608 -13.02146 -12.78881 -12.59507 -12.49396 -12.38894 -12.14921 -11.99795 -11.88575 -11.73687 -11.48422 -11.41263 -11.10775 -11.00005 -10.00262 -9.79818 -9.35371 -9.16431 -8.04738 -5.38186 -0.13427 0.29020 1.32095 1.38022 1.43465 1.77296 1.97475 2.15893 2.45304 2.75620 3.22572 3.46716 3.50858 3.56805 3.67423 3.82594 3.94492 4.01645 4.08623 4.15438 4.17527 4.24017 4.34218 4.40129 4.44861 4.50534 4.62480 4.72942 4.79278 4.85700 4.91491 4.96378 4.96421 5.03252 5.08375 5.14008 5.14899 5.20373 5.27813 5.29241 5.37424 5.47570 5.60677 5.76037 6.19505 6.34995 6.54128 7.05261 7.10572 7.80793 7.98047 9.16724 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.003507 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.344110 B = 7981.718587 C = 8439.647150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.159 3.841 5 C -0.174 4.174 6 C -0.029 4.029 7 C -0.198 4.198 8 C 0.563 3.437 9 O -0.597 6.597 10 N -0.600 5.600 11 C 0.082 3.918 12 C 0.162 3.838 13 H 0.086 0.914 14 N -0.738 5.738 15 C -0.229 4.229 16 H 0.061 0.939 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.303 1.303 22 H -0.262 1.262 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.086 0.914 26 C -0.175 4.175 27 C -0.054 4.054 28 C -0.221 4.221 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.174 0.826 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.301 -4.917 -14.713 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.112 3.888 5 C -0.192 4.192 6 C -0.048 4.048 7 C -0.201 4.201 8 C 0.355 3.645 9 O -0.480 6.480 10 N -0.331 5.331 11 C -0.044 4.044 12 C 0.052 3.948 13 H 0.104 0.896 14 N -0.380 5.380 15 C -0.360 4.360 16 H 0.079 0.921 17 C -0.256 4.256 18 N -0.633 5.633 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.230 1.230 22 H -0.187 1.187 23 C -0.161 4.161 24 C 0.009 3.991 25 H 0.103 0.897 26 C -0.232 4.232 27 C -0.071 4.071 28 C -0.239 4.239 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.147 0.853 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.198 0.802 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.190 0.810 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.039 -4.149 -14.516 30.968 hybrid contribution 0.147 0.281 1.296 1.335 sum -26.892 -3.868 -13.219 30.214 Atomic orbital electron populations 1.21820 0.91561 1.04238 1.03167 1.23189 0.96901 0.80376 1.02934 1.86043 1.18333 1.31937 1.87484 1.19380 0.82950 0.94200 0.92287 1.20457 0.94207 0.96093 1.08452 1.21031 0.92302 0.98483 0.92973 1.19694 0.91148 0.95768 1.13524 1.18429 0.87263 0.82704 0.76138 1.90728 1.78152 1.27899 1.51253 1.48434 1.07849 1.09959 1.66875 1.23084 0.79897 1.01200 1.00183 1.21601 0.98397 0.90957 0.83841 0.89598 1.42650 1.10181 1.78683 1.06498 1.19062 0.89695 1.34866 0.92380 0.92096 1.25487 0.99505 1.02896 0.97700 1.69878 1.26659 1.56787 1.10023 0.85459 0.80065 0.79014 0.77503 1.19059 1.22980 1.18705 1.23140 0.91132 0.98773 1.03089 1.22255 0.97251 0.80739 0.98862 0.89693 1.22814 0.99292 1.04443 0.96688 1.22545 0.96396 0.97299 0.90879 1.21450 0.93010 0.99491 1.09973 0.92091 0.91717 0.88132 0.90118 0.90824 0.83365 0.85301 0.94621 0.90103 0.80250 0.93429 0.86531 0.88292 0.87859 0.91243 0.91004 0.80955 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 71.98 0.74 -0.34 16 2 C 0.04 0.40 5.45 71.98 0.39 0.79 16 3 O -0.32 -5.61 10.12 -90.31 -0.91 -6.53 16 4 C 0.16 3.11 6.70 22.63 0.15 3.27 16 5 C -0.17 -3.81 9.97 22.33 0.22 -3.59 16 6 C -0.03 -0.77 9.58 22.50 0.22 -0.56 16 7 C -0.20 -5.73 5.07 -20.08 -0.10 -5.83 16 8 C 0.56 20.83 7.61 86.72 0.66 21.49 16 9 O -0.60 -27.66 16.70 -3.99 -0.07 -27.72 16 10 N -0.60 -19.64 3.06 -791.71 -2.43 -22.06 16 11 C 0.08 2.96 6.63 86.85 0.58 3.54 16 12 C 0.16 5.53 3.72 46.38 0.17 5.71 16 13 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 14 N -0.74 -33.06 5.04 -316.39 -1.59 -34.66 16 15 C -0.23 -12.92 10.44 84.03 0.88 -12.04 16 16 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 17 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 18 N -0.98 -63.84 13.97 21.65 0.30 -63.54 16 19 Si 0.95 46.03 27.74 68.60 1.90 47.93 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 22 H -0.26 -11.75 6.52 99.48 0.65 -11.11 16 23 C -0.12 -2.73 6.07 31.78 0.19 -2.54 16 24 C 0.11 2.53 2.73 45.34 0.12 2.65 16 25 H 0.09 1.89 6.18 -2.38 -0.01 1.87 16 26 C -0.18 -2.72 7.80 71.98 0.56 -2.16 16 27 C -0.05 -1.16 6.20 22.51 0.14 -1.02 16 28 C -0.22 -3.80 9.01 22.32 0.20 -3.60 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.55 7.65 -2.39 -0.02 0.54 16 33 H 0.07 0.62 7.65 -2.39 -0.02 0.60 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.13 3.63 7.74 -2.91 -0.02 3.60 16 36 H 0.04 1.64 7.98 -2.39 -0.02 1.62 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.36 15.78 5.73 -92.71 -0.53 15.25 16 39 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.12 1.85 7.59 -2.39 -0.02 1.84 16 41 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.28 4.23 -2.39 -0.01 1.27 16 44 H 0.07 1.05 7.72 -2.39 -0.02 1.03 16 45 H 0.17 3.22 2.61 -2.91 -0.01 3.22 16 46 H 0.17 1.69 6.28 -2.91 -0.02 1.68 16 Total: -1.00 -80.50 362.86 3.21 -77.30 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.41 Total: 26.87 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.59 Total: 2.41 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -3.72 Total: -120.26 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.98 Total: -34.25 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.93 kcal Total: -80.50 3.21 -77.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989740543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.888 kcal (2) G-P(sol) polarization free energy of solvation -80.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds