Wall clock time and date at job start Tue Mar 31 2020 12:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47215 * 2 1 4 4 C 1.35713 * 116.99866 * 179.97438 * 3 2 1 5 5 C 1.38990 * 119.91036 * 179.97438 * 4 3 2 6 6 C 1.37702 * 120.09257 * 180.02562 * 5 4 3 7 7 C 1.39735 * 119.90614 * 359.97438 * 6 5 4 8 8 C 1.47608 * 120.08824 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00004 * 335.46924 * 8 7 6 10 10 N 1.34779 * 119.99946 * 155.46398 * 8 7 6 11 11 C 1.47472 * 125.62840 * 354.24513 * 10 8 7 12 12 C 1.54914 * 104.80848 * 204.04574 * 11 10 8 13 13 H 1.09001 * 111.00102 * 81.13211 * 12 11 10 14 14 N 1.46494 * 111.00282 * 204.94749 * 12 11 10 15 15 C 1.36936 * 120.00420 * 270.42067 * 14 12 11 16 16 H 1.07999 * 119.99511 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00324 * 179.72937 * 15 14 12 18 18 N 1.31621 * 119.99824 * 0.26830 * 17 15 14 19 19 Si 1.86797 * 120.00008 * 180.27346 * 17 15 14 20 20 H 1.48503 * 109.46994 * 89.99404 * 19 17 15 21 21 H 1.48494 * 109.47431 * 209.99482 * 19 17 15 22 22 H 1.48503 * 109.47024 * 329.99657 * 19 17 15 23 23 C 1.55160 * 101.61432 * 323.04123 * 12 11 10 24 24 C 1.47019 * 125.64978 * 174.21257 * 10 8 7 25 25 H 1.09004 * 109.87991 * 59.57932 * 24 10 8 26 26 C 1.52998 * 109.88118 * 298.42193 * 24 10 8 27 27 C 1.39741 * 119.82693 * 0.28110 * 7 6 5 28 28 C 1.37698 * 119.90720 * 359.46241 * 27 7 6 29 29 H 1.08996 * 109.47580 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47401 * 300.00147 * 1 2 3 31 31 H 1.09002 * 109.46850 * 59.99921 * 1 2 3 32 32 H 1.08994 * 109.47315 * 239.99988 * 2 1 3 33 33 H 1.09002 * 109.46850 * 120.00079 * 2 1 3 34 34 H 1.08001 * 119.96062 * 0.02936 * 5 4 3 35 35 H 1.07998 * 120.04942 * 179.97438 * 6 5 4 36 36 H 1.09002 * 110.35147 * 85.22858 * 11 10 8 37 37 H 1.09005 * 110.40370 * 322.88920 * 11 10 8 38 38 H 0.97008 * 120.00233 * 90.42024 * 14 12 11 39 39 H 0.97001 * 119.99317 * 180.02562 * 18 17 15 40 40 H 1.09005 * 110.71439 * 153.84980 * 23 12 11 41 41 H 1.09000 * 110.71818 * 277.11950 * 23 12 11 42 42 H 1.09002 * 109.47247 * 302.18168 * 26 24 10 43 43 H 1.09001 * 109.47471 * 62.18774 * 26 24 10 44 44 H 1.09010 * 109.46967 * 182.18930 * 26 24 10 45 45 H 1.07996 * 120.04465 * 179.73007 * 27 7 6 46 46 H 1.07999 * 119.95948 * 180.25504 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8811 2.8102 0.0000 6 6 5.2456 2.9949 0.0000 7 6 6.0985 1.8881 0.0011 8 6 7.5619 2.0814 0.0017 9 8 8.0393 3.1104 -0.4358 10 7 8.3688 1.1173 0.4874 11 6 7.9235 -0.1206 1.1538 12 6 9.1230 -0.5490 2.0356 13 1 9.1396 0.0103 2.9710 14 7 9.0989 -1.9915 2.2899 15 6 8.4295 -2.4840 3.3782 16 1 7.9195 -1.8088 4.0493 17 6 8.4020 -3.8513 3.6160 18 7 9.0239 -4.6741 2.7983 19 14 7.4822 -4.5235 5.0964 20 1 6.0761 -4.8125 4.7161 21 1 8.1365 -5.7734 5.5600 22 1 7.5028 -3.5190 6.1899 23 6 10.3262 -0.1629 1.1353 24 6 9.8382 1.1253 0.4399 25 1 10.2213 1.9991 0.9670 26 6 10.3117 1.1427 -1.0149 27 6 5.5625 0.5976 -0.0038 28 6 4.1968 0.4214 0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2213 3.6653 -0.0003 35 1 5.6562 3.9939 -0.0008 36 1 7.7020 -0.8905 0.4146 37 1 7.0481 0.0750 1.7731 38 1 9.5573 -2.5980 1.6873 39 1 9.0043 -5.6296 2.9643 40 1 11.2114 0.0364 1.7393 41 1 10.5261 -0.9448 0.4025 42 1 9.9081 0.2762 -1.5388 43 1 9.9635 2.0549 -1.4995 44 1 11.4009 1.1094 -1.0430 45 1 6.2184 -0.2604 -0.0074 46 1 3.7816 -0.5756 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989740544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:07 Heat of formation + Delta-G solvation = -29.339875 kcal Electronic energy + Delta-G solvation = -26758.096554 eV Core-core repulsion = 23034.478650 eV Total energy + Delta-G solvation = -3723.617904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60305 -39.73478 -37.75436 -36.90146 -34.24625 -32.60874 -31.71503 -31.42340 -30.94071 -29.43047 -28.42769 -25.64191 -24.53186 -24.03686 -23.22041 -22.21211 -21.12098 -20.33822 -19.14114 -18.30554 -17.42734 -17.04077 -16.34690 -16.22726 -16.02282 -15.14123 -14.67822 -14.45135 -14.14195 -13.99254 -13.68618 -13.57880 -13.47027 -13.29775 -13.21020 -12.87324 -12.71075 -12.43392 -12.36469 -12.11191 -11.99639 -11.89365 -11.67279 -11.17721 -11.07567 -10.95601 -10.91313 -10.65715 -10.61928 -10.33285 -10.06248 -9.83066 -9.68232 -9.14412 -9.03861 -8.44447 -8.22760 -7.14409 -5.90657 -3.21622 0.95844 1.28443 2.94746 2.95808 3.20771 3.34909 3.41662 3.42660 3.83988 4.45817 4.59349 4.65532 4.66631 4.73667 4.85184 4.98361 5.05788 5.10659 5.15250 5.23135 5.27023 5.37655 5.46588 5.49744 5.54885 5.58038 5.64947 5.72670 5.75574 5.79233 5.92552 6.01052 6.07064 6.10547 6.16444 6.23577 6.30347 6.35056 6.42452 6.44907 6.56966 6.70126 6.79726 7.21078 7.58809 7.79967 8.26662 8.39060 9.39084 9.92212 10.27399 11.31219 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008242 B = 0.004501 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.455639 B = 6219.098851 C = 9159.543035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.315 6.315 4 C 0.151 3.849 5 C -0.166 4.166 6 C -0.024 4.024 7 C -0.168 4.168 8 C 0.576 3.424 9 O -0.552 6.552 10 N -0.605 5.605 11 C 0.070 3.930 12 C 0.171 3.829 13 H 0.067 0.933 14 N -0.711 5.711 15 C -0.249 4.249 16 H 0.073 0.927 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C -0.137 4.137 24 C 0.139 3.861 25 H 0.073 0.927 26 C -0.160 4.160 27 C -0.048 4.048 28 C -0.216 4.216 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.147 0.853 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 10.577 -7.263 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.229 6.229 4 C 0.105 3.895 5 C -0.184 4.184 6 C -0.043 4.043 7 C -0.171 4.171 8 C 0.366 3.634 9 O -0.431 6.431 10 N -0.338 5.338 11 C -0.056 4.056 12 C 0.059 3.941 13 H 0.085 0.915 14 N -0.351 5.351 15 C -0.380 4.380 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.176 4.176 24 C 0.035 3.965 25 H 0.091 0.909 26 C -0.218 4.218 27 C -0.066 4.066 28 C -0.235 4.235 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.164 0.836 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.126 11.224 -7.335 16.802 hybrid contribution -0.412 -1.066 0.593 1.288 sum -10.538 10.157 -6.743 16.115 Atomic orbital electron populations 1.21776 0.92663 1.02983 1.03431 1.22863 0.95916 0.81701 1.01969 1.86015 1.19089 1.29741 1.88017 1.19257 0.82240 0.94211 0.93792 1.20323 0.94910 0.94806 1.08382 1.20993 0.91520 0.98757 0.93042 1.19799 0.93099 0.94121 1.10121 1.17848 0.85800 0.82236 0.77532 1.90724 1.76766 1.27203 1.48448 1.48508 1.06823 1.20947 1.57536 1.23751 1.01306 0.84448 0.96102 1.21328 0.90398 0.87492 0.94913 0.91511 1.42317 1.62712 0.99650 1.30431 1.19253 1.25853 0.90843 1.02079 0.90952 1.24752 1.00655 0.96012 0.98911 1.69659 1.46950 1.02688 1.38335 0.86203 0.79259 0.78477 0.82314 1.21626 1.21669 1.20614 1.23029 0.99413 0.95774 0.99352 1.21512 0.79638 0.98803 0.96502 0.90867 1.22123 1.01051 1.02544 0.96099 1.21786 0.95040 0.97277 0.92546 1.21239 0.94106 0.98328 1.09819 0.90237 0.91493 0.91592 0.91731 0.91504 0.84767 0.84370 0.91102 0.90812 0.77819 0.93310 0.90228 0.90329 0.92518 0.91779 0.91765 0.83572 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.45 5.45 37.16 0.20 0.65 16 3 O -0.32 -3.65 10.12 -18.84 -0.19 -3.84 16 4 C 0.15 1.90 6.70 -39.02 -0.26 1.64 16 5 C -0.17 -2.02 9.97 -39.50 -0.39 -2.41 16 6 C -0.02 -0.32 9.58 -39.22 -0.38 -0.70 16 7 C -0.17 -2.52 5.67 -104.95 -0.59 -3.12 16 8 C 0.58 9.68 7.38 -12.44 -0.09 9.59 16 9 O -0.55 -10.45 15.87 5.30 0.08 -10.36 16 10 N -0.61 -9.70 3.07 -164.17 -0.50 -10.20 16 11 C 0.07 1.16 4.69 -2.50 -0.01 1.15 16 12 C 0.17 3.13 3.70 -65.78 -0.24 2.89 16 13 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 14 N -0.71 -16.28 5.26 -51.35 -0.27 -16.55 16 15 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 19 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.14 -2.10 6.11 -24.90 -0.15 -2.25 16 24 C 0.14 2.07 3.43 -66.96 -0.23 1.84 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 27 C -0.05 -0.68 8.06 -39.22 -0.32 -0.99 16 28 C -0.22 -2.75 9.01 -39.50 -0.36 -3.10 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 33 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.14 1.73 7.84 -52.49 -0.41 1.32 16 36 H 0.07 1.21 6.81 -51.93 -0.35 0.85 16 37 H 0.07 1.24 6.85 -51.93 -0.36 0.89 16 38 H 0.39 9.43 7.73 -40.82 -0.32 9.12 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.21 7.71 -51.93 -0.40 0.81 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.96 7.10 -51.93 -0.37 0.59 16 44 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.15 2.08 4.61 -52.49 -0.24 1.84 16 46 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -30.14 372.38 -8.84 -38.98 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.92 Total: 10.05 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.35 Total: -4.17 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.05 Total: -52.48 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.11 Total: -14.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.14 -8.84 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989740544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.642 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds