Wall clock time and date at job start Tue Mar 31 2020 11:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47014 * 2 1 4 4 C 1.35911 * 116.99965 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98399 * 0.02562 * 4 3 2 6 6 C 1.38250 * 120.23477 * 179.72321 * 5 4 3 7 7 C 1.38001 * 120.20899 * 0.51247 * 6 5 4 8 8 C 1.39561 * 119.96320 * 359.49194 * 7 6 5 9 9 C 1.47862 * 120.12025 * 180.22956 * 8 7 6 10 10 O 1.21549 * 119.99995 * 129.42916 * 9 8 7 11 11 N 1.34769 * 120.00133 * 309.44062 * 9 8 7 12 12 C 1.46925 * 120.62832 * 3.49802 * 11 9 8 13 13 C 1.52769 * 109.00930 * 233.58843 * 12 11 9 14 14 C 1.53039 * 109.38086 * 305.58959 * 13 12 11 15 15 C 1.53032 * 109.53854 * 61.24125 * 14 13 12 16 16 H 1.09004 * 109.50027 * 58.58503 * 15 14 13 17 17 N 1.46500 * 109.52354 * 178.66648 * 15 14 13 18 18 C 1.36937 * 119.99918 * 204.85282 * 17 15 14 19 19 H 1.08001 * 119.99991 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00137 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00309 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99698 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46751 * 90.00245 * 22 20 18 24 24 H 1.48501 * 109.47296 * 210.00105 * 22 20 18 25 25 H 1.48500 * 109.47364 * 330.00112 * 22 20 18 26 26 C 1.46923 * 120.63599 * 183.78674 * 11 9 8 27 27 C 1.38448 * 119.98278 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47072 * 299.99538 * 1 2 3 29 29 H 1.08997 * 109.47117 * 60.00367 * 1 2 3 30 30 H 1.09003 * 109.46480 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47072 * 240.00462 * 2 1 3 32 32 H 1.09004 * 109.46965 * 119.99986 * 2 1 3 33 33 H 1.07997 * 119.88101 * 0.02562 * 5 4 3 34 34 H 1.07998 * 119.89079 * 180.25540 * 6 5 4 35 35 H 1.07995 * 120.01961 * 179.76743 * 7 6 5 36 36 H 1.08996 * 109.59061 * 353.42352 * 12 11 9 37 37 H 1.09006 * 109.58878 * 113.85048 * 12 11 9 38 38 H 1.09000 * 109.56292 * 185.55453 * 13 12 11 39 39 H 1.09000 * 109.38248 * 65.51648 * 13 12 11 40 40 H 1.08998 * 109.46131 * 301.21717 * 14 13 12 41 41 H 1.09008 * 109.45484 * 181.26215 * 14 13 12 42 42 H 0.96999 * 120.00085 * 24.85372 * 17 15 14 43 43 H 0.96995 * 120.00291 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.58490 * 246.15289 * 26 11 9 45 45 H 1.08999 * 109.58260 * 6.57102 * 26 11 9 46 46 H 1.08005 * 120.10341 * 0.04684 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4240 0.0005 6 6 5.5707 0.5992 -0.0047 7 6 6.1084 1.8701 0.0007 8 6 5.2664 2.9832 0.0008 9 6 5.8388 4.3465 0.0015 10 8 5.4580 5.1659 -0.8114 11 7 6.7830 4.6805 0.9033 12 6 7.3087 3.6800 1.8421 13 6 7.1737 4.2149 3.2667 14 6 7.8516 5.5837 3.3615 15 6 7.1627 6.5631 2.4086 16 1 6.1065 6.6401 2.6669 17 7 7.7913 7.8815 2.5229 18 6 7.0847 9.0077 2.1951 19 1 6.0641 8.9240 1.8519 20 6 7.6801 10.2569 2.3039 21 7 7.0008 11.3394 1.9893 22 14 9.4451 10.4017 2.8983 23 1 10.3658 10.3392 1.7348 24 1 9.6255 11.6962 3.6033 25 1 9.7472 9.2848 3.8291 26 6 7.3017 6.0535 0.9707 27 6 3.8825 2.8049 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7842 -0.5730 -0.0003 34 1 6.2231 -0.2614 -0.0089 35 1 7.1801 2.0034 0.0004 36 1 6.7411 2.7545 1.7455 37 1 8.3598 3.4908 1.6239 38 1 7.6497 3.5242 3.9626 39 1 6.1175 4.3138 3.5174 40 1 8.9022 5.4884 3.0872 41 1 7.7755 5.9565 4.3830 42 1 8.7081 7.9566 2.8308 43 1 7.4169 12.2123 2.0650 44 1 8.3521 6.0619 0.6799 45 1 6.7294 6.6935 0.2992 46 1 3.2259 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000314923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:29 Heat of formation + Delta-G solvation = -28.660155 kcal Electronic energy + Delta-G solvation = -26561.078984 eV Core-core repulsion = 22837.490555 eV Total energy + Delta-G solvation = -3723.588429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76270 -39.75740 -37.75656 -37.09260 -34.62968 -32.49901 -32.28084 -31.48274 -31.19291 -29.93712 -28.60473 -25.82349 -24.34037 -23.86707 -22.74198 -22.43728 -21.65920 -20.43368 -19.43369 -18.12671 -17.54500 -16.80462 -16.45483 -16.42892 -15.92478 -15.75187 -15.08195 -14.63202 -14.28425 -14.22075 -13.99335 -13.68828 -13.66168 -13.56140 -13.12892 -12.98620 -12.69055 -12.59405 -12.49630 -12.33879 -12.23455 -11.98362 -11.55672 -11.26491 -11.21968 -11.05863 -10.91789 -10.71587 -10.60115 -10.27881 -9.90215 -9.76326 -9.57357 -9.20965 -9.10222 -8.46987 -8.39599 -7.29276 -5.76144 -3.13732 0.77746 1.14336 2.64127 2.91254 3.18547 3.37246 3.39667 3.45461 3.54709 4.37807 4.44147 4.51541 4.58595 4.66510 4.69434 4.80124 4.84359 4.93599 5.00879 5.05894 5.18145 5.20840 5.30587 5.38941 5.39428 5.45419 5.54173 5.64650 5.68071 5.72261 5.80463 5.89882 5.95389 6.03339 6.06046 6.08978 6.15230 6.24714 6.34050 6.40545 6.66028 6.73091 6.90551 7.10626 7.58266 7.99633 8.30798 8.42612 9.19540 9.91067 10.09545 11.41848 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.002756 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.255046 B =10156.423695 C =10708.769429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.128 3.872 5 C -0.196 4.196 6 C -0.084 4.084 7 C -0.131 4.131 8 C -0.075 4.075 9 C 0.554 3.446 10 O -0.528 6.528 11 N -0.598 5.598 12 C 0.096 3.904 13 C -0.130 4.130 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.060 0.940 17 N -0.742 5.742 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.007 3.993 21 N -0.930 5.930 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.093 3.907 27 C -0.104 4.104 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -29.686 -0.714 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.082 3.918 5 C -0.215 4.215 6 C -0.102 4.102 7 C -0.150 4.150 8 C -0.079 4.079 9 C 0.341 3.659 10 O -0.404 6.404 11 N -0.331 5.331 12 C -0.027 4.027 13 C -0.169 4.169 14 C -0.168 4.168 15 C 0.062 3.938 16 H 0.078 0.922 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.031 4.031 27 C -0.123 4.123 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.323 -28.876 -1.206 29.387 hybrid contribution 1.433 -0.022 0.408 1.490 sum -3.890 -28.897 -0.798 29.169 Atomic orbital electron populations 1.21785 0.92613 1.02852 1.03791 1.22805 0.96050 0.81887 1.01344 1.86115 1.18708 1.29345 1.88585 1.18783 0.82544 0.93668 0.96757 1.21355 0.94425 0.98010 1.07662 1.20851 0.94286 0.97025 0.98085 1.21222 0.99898 0.91584 1.02260 1.19753 0.93264 0.93718 1.01142 1.18286 0.79370 0.86872 0.81410 1.90832 1.60550 1.50923 1.38115 1.48152 1.39331 1.11940 1.33681 1.21973 0.99436 0.91985 0.89291 1.21805 1.01879 0.97380 0.95820 1.21867 0.99598 0.94506 1.00819 1.20461 0.97207 0.84936 0.91188 0.92222 1.42720 1.13753 1.01505 1.80438 1.19103 0.97718 0.83505 1.37461 0.89040 1.24688 0.97698 0.95289 1.01249 1.69704 1.36470 0.97397 1.54196 0.86556 0.86332 0.76974 0.78683 1.21033 1.21711 1.20310 1.22741 0.98952 0.79859 1.01589 1.20392 0.93758 0.95555 1.02617 0.91362 0.91384 0.90355 0.92001 0.91968 0.85272 0.85164 0.85016 0.89124 0.91351 0.90881 0.91385 0.92132 0.91323 0.80455 0.92997 0.91959 0.88564 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.36 10.13 -19.46 -0.20 -3.56 16 4 C 0.13 1.43 6.68 -39.28 -0.26 1.17 16 5 C -0.20 -1.70 9.03 -39.35 -0.36 -2.06 16 6 C -0.08 -0.69 10.03 -39.66 -0.40 -1.09 16 7 C -0.13 -1.32 7.36 -39.18 -0.29 -1.61 16 8 C -0.08 -1.01 5.00 -104.98 -0.52 -1.53 16 9 C 0.55 9.31 7.24 -12.33 -0.09 9.23 16 10 O -0.53 -11.21 16.47 5.32 0.09 -11.12 16 11 N -0.60 -9.23 2.98 -174.14 -0.52 -9.75 16 12 C 0.10 1.08 5.34 -3.93 -0.02 1.06 16 13 C -0.13 -1.50 6.07 -26.83 -0.16 -1.66 16 14 C -0.13 -1.90 5.36 -26.69 -0.14 -2.05 16 15 C 0.17 3.32 2.92 -67.82 -0.20 3.12 16 16 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 17 N -0.74 -17.44 4.93 -53.31 -0.26 -17.70 16 18 C -0.25 -7.06 10.41 -15.06 -0.16 -7.22 16 19 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 22 Si 0.88 22.06 27.73 -169.99 -4.71 17.35 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 C 0.09 1.73 6.01 -3.71 -0.02 1.70 16 27 C -0.10 -1.38 9.68 -39.02 -0.38 -1.75 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 32 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 1.13 7.07 -52.49 -0.37 0.76 16 36 H 0.09 0.87 4.56 -51.93 -0.24 0.63 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 43 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 2.15 7.02 -51.93 -0.36 1.79 16 46 H 0.14 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -34.88 369.06 -8.77 -43.65 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.99 Total: 6.85 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.51 Total: -2.46 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.01 Total: -56.27 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.11 Total: -14.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.88 -8.77 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000314923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.987 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds