Wall clock time and date at job start Tue Mar 31 2020 11:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47014 * 2 1 4 4 C 1.35911 * 116.99965 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98399 * 0.02562 * 4 3 2 6 6 C 1.38250 * 120.23477 * 179.72321 * 5 4 3 7 7 C 1.38001 * 120.20899 * 0.51247 * 6 5 4 8 8 C 1.39561 * 119.96320 * 359.49194 * 7 6 5 9 9 C 1.47862 * 120.12025 * 180.22956 * 8 7 6 10 10 O 1.21549 * 119.99995 * 129.42916 * 9 8 7 11 11 N 1.34769 * 120.00133 * 309.44062 * 9 8 7 12 12 C 1.46925 * 120.62832 * 3.49802 * 11 9 8 13 13 C 1.52769 * 109.00930 * 233.58843 * 12 11 9 14 14 C 1.53039 * 109.38086 * 305.58959 * 13 12 11 15 15 C 1.53032 * 109.53854 * 61.24125 * 14 13 12 16 16 H 1.09004 * 109.50027 * 58.58503 * 15 14 13 17 17 N 1.46500 * 109.52354 * 178.66648 * 15 14 13 18 18 C 1.36937 * 119.99918 * 204.85282 * 17 15 14 19 19 H 1.08001 * 119.99991 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00137 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00309 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99698 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46751 * 90.00245 * 22 20 18 24 24 H 1.48501 * 109.47296 * 210.00105 * 22 20 18 25 25 H 1.48500 * 109.47364 * 330.00112 * 22 20 18 26 26 C 1.46923 * 120.63599 * 183.78674 * 11 9 8 27 27 C 1.38448 * 119.98278 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47072 * 299.99538 * 1 2 3 29 29 H 1.08997 * 109.47117 * 60.00367 * 1 2 3 30 30 H 1.09003 * 109.46480 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47072 * 240.00462 * 2 1 3 32 32 H 1.09004 * 109.46965 * 119.99986 * 2 1 3 33 33 H 1.07997 * 119.88101 * 0.02562 * 5 4 3 34 34 H 1.07998 * 119.89079 * 180.25540 * 6 5 4 35 35 H 1.07995 * 120.01961 * 179.76743 * 7 6 5 36 36 H 1.08996 * 109.59061 * 353.42352 * 12 11 9 37 37 H 1.09006 * 109.58878 * 113.85048 * 12 11 9 38 38 H 1.09000 * 109.56292 * 185.55453 * 13 12 11 39 39 H 1.09000 * 109.38248 * 65.51648 * 13 12 11 40 40 H 1.08998 * 109.46131 * 301.21717 * 14 13 12 41 41 H 1.09008 * 109.45484 * 181.26215 * 14 13 12 42 42 H 0.96999 * 120.00085 * 24.85372 * 17 15 14 43 43 H 0.96995 * 120.00291 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.58490 * 246.15289 * 26 11 9 45 45 H 1.08999 * 109.58260 * 6.57102 * 26 11 9 46 46 H 1.08005 * 120.10341 * 0.04684 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4240 0.0005 6 6 5.5707 0.5992 -0.0047 7 6 6.1084 1.8701 0.0007 8 6 5.2664 2.9832 0.0008 9 6 5.8388 4.3465 0.0015 10 8 5.4580 5.1659 -0.8114 11 7 6.7830 4.6805 0.9033 12 6 7.3087 3.6800 1.8421 13 6 7.1737 4.2149 3.2667 14 6 7.8516 5.5837 3.3615 15 6 7.1627 6.5631 2.4086 16 1 6.1065 6.6401 2.6669 17 7 7.7913 7.8815 2.5229 18 6 7.0847 9.0077 2.1951 19 1 6.0641 8.9240 1.8519 20 6 7.6801 10.2569 2.3039 21 7 7.0008 11.3394 1.9893 22 14 9.4451 10.4017 2.8983 23 1 10.3658 10.3392 1.7348 24 1 9.6255 11.6962 3.6033 25 1 9.7472 9.2848 3.8291 26 6 7.3017 6.0535 0.9707 27 6 3.8825 2.8049 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7842 -0.5730 -0.0003 34 1 6.2231 -0.2614 -0.0089 35 1 7.1801 2.0034 0.0004 36 1 6.7411 2.7545 1.7455 37 1 8.3598 3.4908 1.6239 38 1 7.6497 3.5242 3.9626 39 1 6.1175 4.3138 3.5174 40 1 8.9022 5.4884 3.0872 41 1 7.7755 5.9565 4.3830 42 1 8.7081 7.9566 2.8308 43 1 7.4169 12.2123 2.0650 44 1 8.3521 6.0619 0.6799 45 1 6.7294 6.6935 0.2992 46 1 3.2259 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000314923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:28 Heat of formation + Delta-G solvation = -52.893697 kcal Electronic energy + Delta-G solvation = -26562.129829 eV Core-core repulsion = 22837.490555 eV Total energy + Delta-G solvation = -3724.639274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78663 -40.75086 -38.94296 -38.17761 -36.36022 -34.08642 -32.96977 -32.93294 -32.28703 -30.89405 -30.04181 -26.99640 -25.71231 -25.06543 -23.65379 -23.31778 -23.02554 -21.76708 -20.57554 -19.59756 -19.13224 -17.89098 -17.20875 -17.07248 -16.98400 -16.84550 -16.72182 -16.24033 -15.63965 -15.42812 -15.18047 -14.89700 -14.67568 -14.44835 -14.38260 -14.23068 -13.91124 -13.88132 -13.48267 -13.35251 -13.10306 -12.97749 -12.87783 -12.66355 -12.54227 -12.10559 -11.96965 -11.93780 -11.88135 -11.81145 -11.58028 -11.40723 -11.19138 -10.96301 -10.10215 -9.85936 -9.30264 -9.24428 -8.06102 -5.42975 -0.09733 0.36072 1.35552 1.41436 1.48028 1.50064 1.88618 2.28260 2.46145 2.67912 3.24152 3.37926 3.50651 3.77784 3.92318 4.00913 4.01959 4.08219 4.08457 4.13214 4.20998 4.24783 4.32150 4.33291 4.38990 4.48963 4.60227 4.68483 4.77557 4.83077 4.89425 4.90689 4.94664 5.00219 5.10810 5.15590 5.24718 5.31511 5.33627 5.35355 5.42581 5.44474 5.66465 5.72281 6.17295 6.33379 6.41781 7.00327 7.03656 7.74560 7.97977 9.15792 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.002756 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.255046 B =10156.423695 C =10708.769429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.044 3.956 3 O -0.340 6.340 4 C 0.121 3.879 5 C -0.182 4.182 6 C -0.067 4.067 7 C -0.125 4.125 8 C -0.092 4.092 9 C 0.546 3.454 10 O -0.592 6.592 11 N -0.594 5.594 12 C 0.090 3.910 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.169 3.831 16 H 0.026 0.974 17 N -0.742 5.742 18 C -0.240 4.240 19 H 0.041 0.959 20 C -0.066 4.066 21 N -0.986 5.986 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.241 1.241 26 C 0.104 3.896 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.372 0.628 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -35.252 0.945 35.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.255 6.255 4 C 0.076 3.924 5 C -0.200 4.200 6 C -0.084 4.084 7 C -0.144 4.144 8 C -0.096 4.096 9 C 0.335 3.665 10 O -0.474 6.474 11 N -0.325 5.325 12 C -0.030 4.030 13 C -0.162 4.162 14 C -0.159 4.159 15 C 0.060 3.940 16 H 0.044 0.956 17 N -0.385 5.385 18 C -0.371 4.371 19 H 0.059 0.941 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.791 3.209 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.165 1.165 26 C -0.021 4.021 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.172 0.828 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.206 0.794 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.182 -34.546 0.493 34.618 hybrid contribution 0.269 1.601 -0.159 1.631 sum -1.914 -32.944 0.334 33.002 Atomic orbital electron populations 1.21837 0.92097 1.04268 1.02840 1.23152 0.96593 0.80279 1.02967 1.86101 1.18703 1.32107 1.88583 1.18829 0.83284 0.93443 0.96870 1.21784 0.94534 0.98496 1.05198 1.21349 0.94498 0.97356 0.95244 1.21473 1.00482 0.91138 1.01299 1.19453 0.93501 0.92425 1.04179 1.19021 0.78812 0.88068 0.80565 1.90786 1.62498 1.53246 1.40832 1.48210 1.38863 1.11320 1.34141 1.22402 1.01402 0.91380 0.87864 1.21824 1.01204 0.96203 0.96947 1.21802 1.00425 0.94643 0.98985 1.20629 0.95910 0.84567 0.92894 0.95609 1.42613 1.13890 1.01616 1.80426 1.18945 0.96133 0.85687 1.36344 0.94067 1.25669 1.03475 0.94535 1.02063 1.69923 1.39153 0.98115 1.56340 0.85264 0.79163 0.77724 0.78703 1.20272 1.22133 1.16549 1.22257 0.98696 0.81401 0.99767 1.20268 0.93806 0.96046 1.05465 0.92275 0.92434 0.87681 0.90372 0.90059 0.81781 0.80605 0.82831 0.86755 0.88153 0.86320 0.92797 0.89922 0.91260 0.79374 0.93189 0.90578 0.94009 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16 2 C 0.04 0.49 5.46 71.98 0.39 0.89 16 3 O -0.34 -7.23 10.13 -92.55 -0.94 -8.17 16 4 C 0.12 2.61 6.68 22.47 0.15 2.76 16 5 C -0.18 -2.41 9.03 22.42 0.20 -2.21 16 6 C -0.07 -0.74 10.03 22.22 0.22 -0.52 16 7 C -0.13 -2.10 7.36 22.53 0.17 -1.94 16 8 C -0.09 -2.49 5.00 -20.10 -0.10 -2.59 16 9 C 0.55 19.57 7.24 86.79 0.63 20.20 16 10 O -0.59 -28.04 16.47 -3.87 -0.06 -28.11 16 11 N -0.59 -18.56 2.98 -823.13 -2.45 -21.01 16 12 C 0.09 1.72 5.34 86.22 0.46 2.18 16 13 C -0.12 -2.40 6.07 30.53 0.19 -2.21 16 14 C -0.12 -3.23 5.36 30.62 0.16 -3.07 16 15 C 0.17 6.71 2.92 45.07 0.13 6.84 16 16 H 0.03 1.18 8.08 -2.38 -0.02 1.16 16 17 N -0.74 -35.49 4.93 -322.58 -1.59 -37.08 16 18 C -0.24 -14.48 10.41 84.03 0.87 -13.60 16 19 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.99 -65.91 13.97 21.65 0.30 -65.61 16 22 Si 0.97 45.95 27.73 68.60 1.90 47.85 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.24 -9.99 6.52 99.48 0.65 -9.34 16 26 C 0.10 4.07 6.01 86.36 0.52 4.59 16 27 C -0.14 -3.86 9.68 22.63 0.22 -3.64 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 32 H 0.08 0.60 7.66 -2.38 -0.02 0.58 16 33 H 0.16 1.04 6.28 -2.91 -0.02 1.02 16 34 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.15 1.89 7.07 -2.91 -0.02 1.87 16 36 H 0.11 1.71 4.56 -2.39 -0.01 1.70 16 37 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.37 16.33 5.66 -92.71 -0.52 15.80 16 43 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 44 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.04 2.07 7.02 -2.39 -0.02 2.05 16 46 H 0.10 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -87.42 369.06 2.98 -84.43 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.40 Total: 24.31 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.42 Total: 3.39 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -3.74 Total: -123.71 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.00 Total: -36.28 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -87.42 2.98 -84.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000314923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.541 kcal (2) G-P(sol) polarization free energy of solvation -87.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds