Wall clock time and date at job start Tue Mar 31 2020 11:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47221 * 2 1 4 4 C 1.35715 * 116.99955 * 180.02562 * 3 2 1 5 5 C 1.38991 * 119.90769 * 180.02562 * 4 3 2 6 6 C 1.37702 * 120.08995 * 180.02562 * 5 4 3 7 7 C 1.39737 * 119.90483 * 359.97411 * 6 5 4 8 8 C 1.47606 * 120.08516 * 180.02562 * 7 6 5 9 9 O 1.21581 * 120.00244 * 318.80301 * 8 7 6 10 10 N 1.34780 * 119.99866 * 138.79812 * 8 7 6 11 11 C 1.46930 * 120.62900 * 354.16887 * 10 8 7 12 12 C 1.53198 * 108.77357 * 233.58394 * 11 10 8 13 13 C 1.53045 * 109.31338 * 305.36671 * 12 11 10 14 14 C 1.53045 * 109.53598 * 61.36389 * 13 12 11 15 15 H 1.09000 * 109.49532 * 58.58833 * 14 13 12 16 16 N 1.46503 * 109.49431 * 178.65464 * 14 13 12 17 17 C 1.36934 * 120.00019 * 204.93914 * 16 14 13 18 18 H 1.08005 * 119.99811 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00512 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99378 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00344 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46786 * 89.99993 * 21 19 17 23 23 H 1.48492 * 109.47043 * 210.00198 * 21 19 17 24 24 H 1.48501 * 109.46983 * 330.00556 * 21 19 17 25 25 C 1.46925 * 120.62969 * 174.14335 * 10 8 7 26 26 C 1.39732 * 119.82793 * 0.27721 * 7 6 5 27 27 C 1.37702 * 119.90832 * 359.46803 * 26 7 6 28 28 H 1.09008 * 109.46816 * 299.99832 * 1 2 3 29 29 H 1.09000 * 109.47469 * 59.99282 * 1 2 3 30 30 H 1.08999 * 109.47226 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46829 * 240.00375 * 2 1 3 32 32 H 1.09000 * 109.47307 * 120.00188 * 2 1 3 33 33 H 1.08000 * 119.95685 * 0.02562 * 5 4 3 34 34 H 1.07996 * 120.05040 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.58505 * 113.79935 * 11 10 8 36 36 H 1.08990 * 109.58931 * 353.37095 * 11 10 8 37 37 H 1.08997 * 109.49732 * 185.41565 * 12 11 10 38 38 H 1.08994 * 109.52140 * 65.33424 * 12 11 10 39 39 H 1.09002 * 109.45864 * 301.34809 * 13 12 11 40 40 H 1.08992 * 109.44628 * 181.38120 * 13 12 11 41 41 H 0.97003 * 120.00150 * 24.92997 * 16 14 13 42 42 H 0.97001 * 119.99270 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.58963 * 6.62979 * 25 10 8 44 44 H 1.08999 * 109.58953 * 246.19966 * 25 10 8 45 45 H 1.08001 * 120.04541 * 179.72639 * 26 7 6 46 46 H 1.07997 * 119.95399 * 180.25337 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 3.8810 2.8103 0.0000 6 6 5.2456 2.9951 -0.0011 7 6 6.0985 1.8881 -0.0022 8 6 7.5618 2.0816 -0.0028 9 8 8.0604 2.9470 -0.6960 10 7 8.3453 1.2988 0.7653 11 6 7.7517 0.3358 1.7029 12 6 8.3364 0.5811 3.0976 13 6 9.8640 0.5259 3.0229 14 6 10.3707 1.6253 2.0865 15 1 10.0400 2.5968 2.4536 16 7 11.8346 1.5922 2.0407 17 6 12.5353 2.7236 1.7180 18 1 12.0086 3.6402 1.4968 19 6 13.9224 2.6925 1.6751 20 7 14.5642 1.5755 1.9451 21 14 14.8781 4.2357 1.2341 22 1 15.1812 5.0004 2.4705 23 1 16.1473 3.8569 0.5627 24 1 14.0655 5.0765 0.3188 25 6 9.8092 1.3918 0.6804 26 6 5.5624 0.5977 -0.0080 27 6 4.1968 0.4215 -0.0016 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2211 3.6653 0.0012 34 1 5.6561 3.9939 -0.0011 35 1 7.9863 -0.6791 1.3817 36 1 6.6707 0.4717 1.7309 37 1 7.9777 -0.1871 3.7827 38 1 8.0249 1.5622 3.4557 39 1 10.1740 -0.4471 2.6417 40 1 10.2816 0.6758 4.0184 41 1 12.3076 0.7689 2.2391 42 1 15.5335 1.5537 1.9148 43 1 10.0855 2.2245 0.0337 44 1 10.2115 0.4631 0.2759 45 1 6.2184 -0.2603 -0.0133 46 1 3.7817 -0.5755 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000826434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:36 Heat of formation + Delta-G solvation = -33.876515 kcal Electronic energy + Delta-G solvation = -26423.212486 eV Core-core repulsion = 22699.397860 eV Total energy + Delta-G solvation = -3723.814627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76035 -39.76325 -37.71835 -36.95664 -34.49415 -32.61772 -32.16382 -31.29265 -31.14207 -30.07294 -28.09619 -25.50275 -24.49868 -23.90568 -23.08789 -22.05691 -21.80442 -20.32489 -19.17769 -18.52681 -17.27330 -17.07313 -16.53279 -16.39385 -15.69403 -15.13724 -14.86377 -14.51352 -14.41793 -14.12531 -13.82961 -13.73270 -13.64532 -13.57881 -13.30292 -13.07247 -12.73509 -12.55721 -12.45121 -12.31157 -12.12225 -12.07124 -11.35152 -11.17662 -11.07966 -10.96157 -10.82173 -10.63559 -10.53872 -10.18643 -9.81138 -9.77082 -9.57053 -9.28550 -9.05539 -8.49025 -8.27941 -6.98311 -5.77189 -3.06827 0.85304 1.06929 2.77593 2.85524 3.20210 3.46394 3.51740 3.54581 3.62230 4.38343 4.45462 4.52531 4.56150 4.60238 4.64067 4.77410 4.91413 4.98192 5.06669 5.10801 5.20563 5.27072 5.31400 5.40138 5.49721 5.54550 5.55984 5.63646 5.71750 5.80728 5.86516 5.94305 5.99552 6.05263 6.16035 6.20575 6.24384 6.36562 6.40115 6.51362 6.76753 6.84956 7.02311 7.04259 7.67543 7.73920 8.38789 8.42194 9.52923 10.06861 10.42272 11.45066 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002530 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.448275 B =11062.377333 C =11702.358313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.147 3.853 5 C -0.158 4.158 6 C -0.027 4.027 7 C -0.160 4.160 8 C 0.556 3.444 9 O -0.537 6.537 10 N -0.601 5.601 11 C 0.099 3.901 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.168 3.832 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.092 3.908 26 C -0.048 4.048 27 C -0.217 4.217 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.134 0.866 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.204 -7.223 -0.861 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.101 3.899 5 C -0.177 4.177 6 C -0.046 4.046 7 C -0.163 4.163 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.334 5.334 11 C -0.024 4.024 12 C -0.169 4.169 13 C -0.164 4.164 14 C 0.057 3.943 15 H 0.069 0.931 16 N -0.359 5.359 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.032 4.032 26 C -0.066 4.066 27 C -0.236 4.236 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.152 0.848 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.978 -6.458 -1.269 28.742 hybrid contribution 0.869 0.142 -0.192 0.901 sum -27.109 -6.316 -1.461 27.873 Atomic orbital electron populations 1.21783 0.92626 1.02959 1.03609 1.22836 0.95986 0.81796 1.01651 1.86041 1.19060 1.29590 1.88103 1.19199 0.82228 0.94164 0.94337 1.20371 0.94932 0.94930 1.07453 1.21031 0.91560 0.98867 0.93159 1.19920 0.93677 0.94134 1.08576 1.18258 0.86014 0.81283 0.80077 1.90800 1.75275 1.32966 1.42426 1.48186 1.07802 1.38265 1.39105 1.22025 0.98325 0.92455 0.89550 1.21890 0.96817 1.02285 0.95878 1.21829 0.93850 0.99859 1.00902 1.20491 0.85753 0.96638 0.91398 0.93095 1.42376 0.98748 1.11938 1.82823 1.19282 0.88970 0.89871 1.39111 0.91019 1.24751 0.96447 0.97211 1.02370 1.69667 1.07406 1.25376 1.55632 0.86182 0.79536 0.82497 0.77998 1.21695 1.21756 1.20579 1.22799 0.75699 1.02726 1.01950 1.21186 0.94555 0.96370 0.94538 1.21146 0.93929 0.98209 1.10290 0.91449 0.91470 0.90275 0.91823 0.91764 0.84614 0.84332 0.91491 0.89554 0.91045 0.91567 0.92057 0.91414 0.78086 0.93502 0.89030 0.91981 0.84836 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.28 37.16 0.38 -0.27 16 2 C 0.05 0.31 5.45 37.16 0.20 0.51 16 3 O -0.31 -2.86 10.12 -18.85 -0.19 -3.05 16 4 C 0.15 1.46 6.70 -39.02 -0.26 1.19 16 5 C -0.16 -1.64 9.97 -39.50 -0.39 -2.04 16 6 C -0.03 -0.33 9.64 -39.22 -0.38 -0.71 16 7 C -0.16 -2.10 5.08 -104.96 -0.53 -2.63 16 8 C 0.56 9.34 7.30 -12.44 -0.09 9.25 16 9 O -0.54 -11.28 16.36 5.29 0.09 -11.19 16 10 N -0.60 -9.49 2.97 -173.97 -0.52 -10.00 16 11 C 0.10 1.17 4.92 -3.70 -0.02 1.15 16 12 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 13 C -0.13 -1.99 5.35 -26.68 -0.14 -2.13 16 14 C 0.17 3.38 2.92 -67.81 -0.20 3.18 16 15 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 16 N -0.72 -17.97 5.13 -53.30 -0.27 -18.24 16 17 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 18 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 21 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.09 1.78 6.03 -3.71 -0.02 1.76 16 26 C -0.05 -0.50 7.38 -39.22 -0.29 -0.79 16 27 C -0.22 -1.95 9.01 -39.50 -0.36 -2.31 16 28 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.09 0.87 4.81 -51.93 -0.25 0.62 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.39 10.09 7.80 -40.82 -0.32 9.77 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.09 2.07 7.00 -51.93 -0.36 1.70 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.13 1.20 6.70 -52.49 -0.35 0.85 16 46 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -33.53 371.54 -9.12 -42.66 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.02 Total: 6.78 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.51 Total: -2.96 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.07 Total: -55.70 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.10 Total: -14.24 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.53 -9.12 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000826434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.780 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds