Wall clock time and date at job start Tue Mar 31 2020 12:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99949 * 2 1 4 4 N 1.34778 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00183 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47196 * 173.70604 * 5 4 2 7 7 H 1.09004 * 110.42145 * 57.94511 * 6 5 4 8 8 C 1.54907 * 110.37558 * 180.25669 * 6 5 4 9 9 C 1.55137 * 101.65314 * 155.89964 * 8 6 5 10 10 C 1.54310 * 103.01898 * 324.34687 * 9 8 6 11 11 N 1.47436 * 107.23415 * 22.28428 * 10 9 8 12 12 C 1.46898 * 111.00023 * 123.25713 * 11 10 9 13 13 C 1.50704 * 109.47178 * 78.05807 * 12 11 10 14 14 C 1.38305 * 119.93225 * 90.00098 * 13 12 11 15 15 C 1.38093 * 120.06943 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.93069 * 0.02562 * 15 14 13 17 17 O 1.35754 * 120.06728 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00325 * 358.45444 * 17 16 15 19 19 H 1.08003 * 119.99618 * 5.13489 * 18 17 16 20 20 C 1.38658 * 120.00286 * 185.13711 * 18 17 16 21 21 N 1.31557 * 119.99886 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99869 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47037 * 89.99592 * 22 20 18 24 24 H 1.48496 * 109.46900 * 209.99749 * 22 20 18 25 25 H 1.48503 * 109.47166 * 329.99986 * 22 20 18 26 26 C 1.38878 * 119.86292 * 0.27737 * 16 15 14 27 27 C 1.38101 * 119.92840 * 359.46148 * 26 16 15 28 28 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47232 * 300.00431 * 1 2 3 30 30 H 1.09001 * 109.47130 * 60.00961 * 1 2 3 31 31 H 0.97001 * 119.99867 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.47346 * 53.70410 * 5 4 2 33 33 H 1.09006 * 109.47128 * 293.70466 * 5 4 2 34 34 H 1.09000 * 110.99106 * 37.80387 * 8 6 5 35 35 H 1.09007 * 111.02312 * 274.00800 * 8 6 5 36 36 H 1.08998 * 110.70387 * 205.96254 * 9 8 6 37 37 H 1.09004 * 110.85843 * 82.80225 * 9 8 6 38 38 H 1.09007 * 109.88878 * 262.87467 * 10 9 8 39 39 H 1.09007 * 109.88771 * 141.69249 * 10 9 8 40 40 H 1.08996 * 109.47337 * 318.05809 * 12 11 10 41 41 H 1.09004 * 109.47398 * 198.05408 * 12 11 10 42 42 H 1.08002 * 119.96073 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03772 * 179.97438 * 15 14 13 44 44 H 0.97001 * 119.99598 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.03471 * 179.72522 * 26 16 15 46 46 H 1.07997 * 119.96799 * 180.23848 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6009 0.1597 7 1 3.7718 -3.2320 -0.6417 8 6 5.7047 -2.6244 0.1695 9 6 5.9933 -3.9405 0.9384 10 6 4.8596 -3.9879 1.9842 11 7 3.7618 -3.1446 1.4768 12 6 2.5123 -3.9106 1.3776 13 6 1.8987 -4.0505 2.7470 14 6 1.0075 -3.0971 3.2046 15 6 0.4432 -3.2228 4.4587 16 6 0.7719 -4.3077 5.2609 17 8 0.2193 -4.4338 6.4944 18 6 -0.6168 -3.4543 6.8936 19 1 -0.8850 -2.6617 6.2107 20 6 -1.1324 -3.4646 8.1807 21 7 -1.9478 -2.5085 8.5703 22 14 -0.6690 -4.8358 9.3615 23 1 0.5480 -4.4470 10.1185 24 1 -1.7874 -5.0717 10.3095 25 1 -0.3991 -6.0789 8.5952 26 6 1.6721 -5.2602 4.8010 27 6 2.2288 -5.1316 3.5438 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6960 -2.0072 0.0005 32 1 4.0089 -0.5586 0.8294 33 1 4.0096 -0.7541 -0.9399 34 1 6.1050 -1.7635 0.7050 35 1 6.1016 -2.6696 -0.8448 36 1 6.9667 -3.8959 1.4269 37 1 5.9379 -4.8003 0.2706 38 1 5.2174 -3.5973 2.9369 39 1 4.5123 -5.0137 2.1084 40 1 2.7237 -4.8997 0.9714 41 1 1.8173 -3.3886 0.7198 42 1 0.7526 -2.2533 2.5804 43 1 -0.2524 -2.4777 4.8157 44 1 -2.3081 -2.5155 9.4709 45 1 1.9331 -6.1026 5.4243 46 1 2.9259 -5.8739 3.1841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027709928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:53 Heat of formation + Delta-G solvation = -31.803792 kcal Electronic energy + Delta-G solvation = -26758.944618 eV Core-core repulsion = 23035.219871 eV Total energy + Delta-G solvation = -3723.724747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15866 -39.27020 -38.77674 -36.72627 -34.71290 -32.90778 -32.25726 -31.04309 -30.30356 -29.18908 -28.98548 -25.98293 -25.05102 -23.98882 -22.27537 -21.48910 -20.65551 -20.40473 -20.09417 -17.92871 -17.32524 -17.01091 -16.61220 -16.10078 -15.46845 -15.31407 -14.95752 -14.84163 -14.16635 -14.00726 -13.84394 -13.74811 -13.60488 -13.24429 -13.03490 -12.81191 -12.71911 -12.64395 -12.39071 -12.28875 -12.09646 -11.95992 -11.49451 -11.39741 -11.28241 -11.26111 -10.91348 -10.74877 -10.70076 -10.62583 -10.16517 -9.91204 -9.40270 -9.11822 -8.88688 -8.39508 -8.27654 -7.34332 -6.43369 -4.10013 2.10980 2.14653 2.62685 3.15067 3.20428 3.24460 3.38391 3.79275 4.21924 4.34930 4.42832 4.55636 4.64518 4.77952 4.83899 4.93664 4.95523 5.08414 5.12556 5.13046 5.23191 5.30011 5.33202 5.44879 5.50188 5.55764 5.56399 5.61556 5.68309 5.73564 5.77098 5.81503 5.95600 6.06781 6.10948 6.29564 6.36313 6.53951 6.74530 6.86113 6.95345 7.06562 7.22505 7.30032 7.42236 7.59107 7.78334 8.01920 8.18019 8.91833 9.53982 10.64205 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003396 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.601844 B = 8242.818816 C = 9800.479648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.553 6.553 4 N -0.725 5.725 5 C 0.135 3.865 6 C 0.056 3.944 7 H 0.058 0.942 8 C -0.119 4.119 9 C -0.142 4.142 10 C 0.045 3.955 11 N -0.516 5.516 12 C 0.109 3.891 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.222 4.222 16 C 0.162 3.838 17 O -0.217 6.217 18 C -0.390 4.390 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.193 4.193 27 C -0.068 4.068 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.280 0.720 45 H 0.115 0.885 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -3.297 -19.038 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.431 6.431 4 N -0.380 5.380 5 C 0.011 3.989 6 C -0.052 4.052 7 H 0.076 0.924 8 C -0.158 4.158 9 C -0.180 4.180 10 C -0.082 4.082 11 N -0.241 5.241 12 C -0.018 4.018 13 C -0.170 4.170 14 C -0.069 4.069 15 C -0.241 4.241 16 C 0.109 3.891 17 O -0.122 6.122 18 C -0.466 4.466 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.212 4.212 27 C -0.087 4.087 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.235 0.765 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.150 0.850 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.257 -2.224 -18.329 21.625 hybrid contribution -0.117 -1.470 0.155 1.483 sum 11.140 -3.694 -18.174 21.634 Atomic orbital electron populations 1.21871 0.91759 1.04317 1.05371 1.20801 0.90624 0.83451 0.75321 1.90710 1.70834 1.31488 1.50060 1.46302 1.07565 1.08767 1.75352 1.21339 0.79817 0.95940 1.01842 1.22828 0.95688 0.95243 0.91477 0.92356 1.22644 0.93681 0.98647 1.00808 1.22797 0.99677 0.97408 0.98150 1.22849 0.90404 0.96422 0.98534 1.63575 1.02852 1.35006 1.22670 1.21067 0.90528 0.95400 0.94819 1.19053 1.03303 0.98002 0.96689 1.20534 0.95063 0.96444 0.94887 1.21264 1.06219 1.00953 0.95632 1.19130 0.91236 0.93173 0.85548 1.83574 1.55067 1.45822 1.27722 1.20771 1.22335 1.04128 0.99326 0.87597 1.24468 0.95409 0.97553 0.96521 1.69647 1.30335 1.31822 1.19809 0.86187 0.78222 0.82416 0.80109 1.19877 1.20766 1.18386 1.20145 1.02457 1.01158 0.97481 1.20438 0.98181 0.96849 0.93183 0.90605 0.88406 0.88934 0.76466 0.90342 0.91720 0.90116 0.90711 0.90639 0.91618 0.90304 0.92339 0.94242 0.91753 0.87681 0.85012 0.91027 0.86696 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.39 36.00 0.37 -1.18 16 2 C 0.51 6.34 7.94 -10.99 -0.09 6.25 16 3 O -0.55 -9.23 17.08 5.55 0.09 -9.14 16 4 N -0.72 -7.60 5.39 -60.30 -0.32 -7.93 16 5 C 0.13 1.40 5.38 -4.05 -0.02 1.38 16 6 C 0.06 0.50 2.62 -66.19 -0.17 0.33 16 7 H 0.06 0.47 7.81 -51.93 -0.41 0.06 16 8 C -0.12 -0.90 6.49 -24.59 -0.16 -1.06 16 9 C -0.14 -1.09 6.94 -24.91 -0.17 -1.26 16 10 C 0.05 0.47 6.38 -2.84 -0.02 0.45 16 11 N -0.52 -5.73 4.71 -224.82 -1.06 -6.79 16 12 C 0.11 1.24 4.66 -4.98 -0.02 1.22 16 13 C -0.17 -2.57 5.25 -104.57 -0.55 -3.11 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 15 C -0.22 -4.66 9.17 -39.40 -0.36 -5.02 16 16 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 17 O -0.22 -5.67 8.59 0.05 0.00 -5.67 16 18 C -0.39 -10.91 9.94 30.89 0.31 -10.61 16 19 H 0.11 3.03 5.43 -52.48 -0.28 2.74 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.27 13.96 55.48 0.77 -24.50 16 22 Si 0.91 21.55 28.62 -169.99 -4.86 16.68 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.19 -3.69 9.99 -39.39 -0.39 -4.09 16 27 C -0.07 -1.07 9.08 -39.61 -0.36 -1.43 16 28 H 0.07 0.53 7.92 -51.92 -0.41 0.11 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.51 5.36 -40.82 -0.22 3.29 16 32 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.59 6.03 -51.92 -0.31 0.28 16 40 H 0.04 0.41 7.64 -51.93 -0.40 0.01 16 41 H 0.06 0.64 4.97 -51.93 -0.26 0.38 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.95 5.62 -52.49 -0.30 2.66 16 44 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 46 H 0.11 1.40 7.13 -52.49 -0.37 1.03 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -32.09 371.24 -8.90 -40.98 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.74 Total: 5.08 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -2.38 Total: -14.32 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.61 Total: -39.21 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.10 Total: -14.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.09 -8.90 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027709928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.181 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds