Wall clock time and date at job start Tue Mar 31 2020 12:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99949 * 2 1 4 4 N 1.34778 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00183 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47196 * 173.70604 * 5 4 2 7 7 H 1.09004 * 110.42145 * 57.94511 * 6 5 4 8 8 C 1.54907 * 110.37558 * 180.25669 * 6 5 4 9 9 C 1.55137 * 101.65314 * 155.89964 * 8 6 5 10 10 C 1.54310 * 103.01898 * 324.34687 * 9 8 6 11 11 N 1.47436 * 107.23415 * 22.28428 * 10 9 8 12 12 C 1.46898 * 111.00023 * 123.25713 * 11 10 9 13 13 C 1.50704 * 109.47178 * 78.05807 * 12 11 10 14 14 C 1.38305 * 119.93225 * 90.00098 * 13 12 11 15 15 C 1.38093 * 120.06943 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.93069 * 0.02562 * 15 14 13 17 17 O 1.35754 * 120.06728 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00325 * 358.45444 * 17 16 15 19 19 H 1.08003 * 119.99618 * 5.13489 * 18 17 16 20 20 C 1.38658 * 120.00286 * 185.13711 * 18 17 16 21 21 N 1.31557 * 119.99886 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99869 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47037 * 89.99592 * 22 20 18 24 24 H 1.48496 * 109.46900 * 209.99749 * 22 20 18 25 25 H 1.48503 * 109.47166 * 329.99986 * 22 20 18 26 26 C 1.38878 * 119.86292 * 0.27737 * 16 15 14 27 27 C 1.38101 * 119.92840 * 359.46148 * 26 16 15 28 28 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47232 * 300.00431 * 1 2 3 30 30 H 1.09001 * 109.47130 * 60.00961 * 1 2 3 31 31 H 0.97001 * 119.99867 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.47346 * 53.70410 * 5 4 2 33 33 H 1.09006 * 109.47128 * 293.70466 * 5 4 2 34 34 H 1.09000 * 110.99106 * 37.80387 * 8 6 5 35 35 H 1.09007 * 111.02312 * 274.00800 * 8 6 5 36 36 H 1.08998 * 110.70387 * 205.96254 * 9 8 6 37 37 H 1.09004 * 110.85843 * 82.80225 * 9 8 6 38 38 H 1.09007 * 109.88878 * 262.87467 * 10 9 8 39 39 H 1.09007 * 109.88771 * 141.69249 * 10 9 8 40 40 H 1.08996 * 109.47337 * 318.05809 * 12 11 10 41 41 H 1.09004 * 109.47398 * 198.05408 * 12 11 10 42 42 H 1.08002 * 119.96073 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03772 * 179.97438 * 15 14 13 44 44 H 0.97001 * 119.99598 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.03471 * 179.72522 * 26 16 15 46 46 H 1.07997 * 119.96799 * 180.23848 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6009 0.1597 7 1 3.7718 -3.2320 -0.6417 8 6 5.7047 -2.6244 0.1695 9 6 5.9933 -3.9405 0.9384 10 6 4.8596 -3.9879 1.9842 11 7 3.7618 -3.1446 1.4768 12 6 2.5123 -3.9106 1.3776 13 6 1.8987 -4.0505 2.7470 14 6 1.0075 -3.0971 3.2046 15 6 0.4432 -3.2228 4.4587 16 6 0.7719 -4.3077 5.2609 17 8 0.2193 -4.4338 6.4944 18 6 -0.6168 -3.4543 6.8936 19 1 -0.8850 -2.6617 6.2107 20 6 -1.1324 -3.4646 8.1807 21 7 -1.9478 -2.5085 8.5703 22 14 -0.6690 -4.8358 9.3615 23 1 0.5480 -4.4470 10.1185 24 1 -1.7874 -5.0717 10.3095 25 1 -0.3991 -6.0789 8.5952 26 6 1.6721 -5.2602 4.8010 27 6 2.2288 -5.1316 3.5438 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6960 -2.0072 0.0005 32 1 4.0089 -0.5586 0.8294 33 1 4.0096 -0.7541 -0.9399 34 1 6.1050 -1.7635 0.7050 35 1 6.1016 -2.6696 -0.8448 36 1 6.9667 -3.8959 1.4269 37 1 5.9379 -4.8003 0.2706 38 1 5.2174 -3.5973 2.9369 39 1 4.5123 -5.0137 2.1084 40 1 2.7237 -4.8997 0.9714 41 1 1.8173 -3.3886 0.7198 42 1 0.7526 -2.2533 2.5804 43 1 -0.2524 -2.4777 4.8157 44 1 -2.3081 -2.5155 9.4709 45 1 1.9331 -6.1026 5.4243 46 1 2.9259 -5.8739 3.1841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027709928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:52 Heat of formation + Delta-G solvation = -53.928879 kcal Electronic energy + Delta-G solvation = -26759.904034 eV Core-core repulsion = 23035.219871 eV Total energy + Delta-G solvation = -3724.684163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17438 -40.68157 -39.85459 -38.26248 -35.66148 -34.54491 -33.68328 -31.89546 -31.76647 -30.40269 -29.78508 -27.58006 -26.20739 -25.11800 -23.72480 -22.52929 -21.72142 -21.36260 -21.01141 -19.81417 -19.08570 -17.89306 -17.49382 -16.98147 -16.65582 -16.47049 -16.24875 -16.05298 -15.72103 -15.65517 -15.23950 -14.82307 -14.64243 -14.42958 -14.29722 -14.09247 -13.87715 -13.65268 -13.55142 -13.38929 -13.19044 -12.98903 -12.87515 -12.51115 -12.40696 -12.20332 -12.11655 -12.05030 -11.88596 -11.80724 -11.48833 -11.23604 -10.93422 -10.89646 -10.05893 -9.76856 -9.23101 -8.95183 -8.49998 -6.22414 0.60311 0.65378 1.30755 1.35010 1.51260 1.65948 2.27669 2.31605 2.70096 2.95882 3.13477 3.27021 3.68741 3.78902 3.82259 4.04042 4.07368 4.13770 4.17207 4.26269 4.28548 4.42432 4.46774 4.56592 4.60346 4.62837 4.64949 4.72039 4.81861 4.82944 4.94490 4.99363 5.05641 5.07819 5.11901 5.21028 5.26808 5.39655 5.40480 5.50275 5.58546 5.77123 5.82427 5.92581 6.11818 6.17375 6.28716 6.55798 6.84572 7.26668 7.59768 8.61740 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.003396 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.601844 B = 8242.818816 C = 9800.479648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.715 5.715 5 C 0.134 3.866 6 C 0.065 3.935 7 H 0.082 0.918 8 C -0.117 4.117 9 C -0.133 4.133 10 C 0.041 3.959 11 N -0.539 5.539 12 C 0.110 3.890 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.239 4.239 16 C 0.118 3.882 17 O -0.247 6.247 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.193 4.193 27 C -0.059 4.059 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.408 0.592 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.284 0.716 45 H 0.126 0.874 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -5.874 -21.993 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.369 5.369 5 C 0.010 3.990 6 C -0.043 4.043 7 H 0.100 0.900 8 C -0.156 4.156 9 C -0.171 4.171 10 C -0.086 4.086 11 N -0.264 5.264 12 C -0.018 4.018 13 C -0.141 4.141 14 C -0.072 4.072 15 C -0.258 4.258 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.475 4.475 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.212 4.212 27 C -0.077 4.077 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.144 0.856 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.327 -4.839 -21.332 25.615 hybrid contribution -0.557 -0.643 0.721 1.115 sum 12.770 -5.482 -20.612 24.859 Atomic orbital electron populations 1.21905 0.89187 1.06097 1.05753 1.21432 0.91994 0.83105 0.74316 1.90686 1.72064 1.33299 1.52551 1.46277 1.07779 1.08738 1.74110 1.21357 0.79707 0.96887 1.01065 1.22808 0.96599 0.94020 0.90899 0.89981 1.22662 0.92605 0.98295 1.02005 1.22750 0.98892 0.97902 0.97581 1.22859 0.91083 0.96245 0.98464 1.63381 1.03058 1.35486 1.24457 1.21110 0.91011 0.97452 0.92184 1.19597 1.00442 0.95928 0.98134 1.20784 0.95085 0.97779 0.93537 1.21256 1.06706 1.00423 0.97449 1.19695 0.93160 0.95147 0.85051 1.83512 1.56471 1.45649 1.29796 1.20697 1.23170 1.04256 0.99406 0.90292 1.25284 0.95494 1.00022 0.98071 1.69735 1.32238 1.33908 1.20621 0.85215 0.78402 0.79149 0.77928 1.19274 1.19152 1.18551 1.20483 1.01331 1.00444 0.98928 1.20916 0.97577 0.97626 0.91588 0.88117 0.89100 0.87455 0.75248 0.93356 0.90901 0.91311 0.88478 0.90136 0.89892 0.92492 0.91622 0.91531 0.89958 0.85587 0.87918 0.90609 0.85636 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.39 71.23 0.74 -2.01 16 2 C 0.50 11.93 7.94 87.66 0.70 12.63 16 3 O -0.60 -20.34 17.08 -3.05 -0.05 -20.40 16 4 N -0.71 -13.30 5.39 -463.06 -2.50 -15.80 16 5 C 0.13 2.51 5.38 86.38 0.46 2.97 16 6 C 0.06 0.90 2.62 45.39 0.12 1.02 16 7 H 0.08 0.83 7.81 -2.39 -0.02 0.81 16 8 C -0.12 -1.35 6.49 31.98 0.21 -1.14 16 9 C -0.13 -1.48 6.94 31.77 0.22 -1.26 16 10 C 0.04 0.68 6.38 86.64 0.55 1.24 16 11 N -0.54 -9.92 4.71 -865.20 -4.07 -13.99 16 12 C 0.11 1.95 4.66 85.56 0.40 2.35 16 13 C -0.14 -3.76 5.25 -19.83 -0.10 -3.87 16 14 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 15 C -0.24 -10.44 9.17 22.39 0.21 -10.24 16 16 C 0.12 5.50 6.65 22.58 0.15 5.65 16 17 O -0.25 -13.47 8.59 -22.74 -0.20 -13.67 16 18 C -0.40 -23.76 9.94 67.92 0.68 -23.08 16 19 H 0.08 4.95 5.43 -2.91 -0.02 4.93 16 20 C 0.01 0.55 5.49 84.83 0.47 1.02 16 21 N -0.92 -55.78 13.96 21.61 0.30 -55.48 16 22 Si 0.97 45.75 28.62 68.60 1.96 47.71 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.19 -7.11 9.99 22.39 0.22 -6.89 16 27 C -0.06 -1.65 9.08 22.25 0.20 -1.45 16 28 H 0.10 1.09 7.92 -2.38 -0.02 1.08 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.41 5.67 5.36 -92.71 -0.50 5.18 16 32 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 0.99 6.03 -2.38 -0.01 0.98 16 40 H 0.07 0.93 7.64 -2.39 -0.02 0.91 16 41 H 0.08 1.19 4.97 -2.38 -0.01 1.18 16 42 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.10 5.03 5.62 -2.91 -0.02 5.02 16 44 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 46 H 0.15 3.02 7.13 -2.91 -0.02 3.00 16 Total: -1.00 -75.90 371.24 1.38 -74.52 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.50 Total: 21.72 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 5.43 Total: -24.62 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -6.27 Total: -85.26 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.25 Total: -34.06 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.96 Total: 47.71 kcal Total: -75.90 1.38 -74.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027709928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds