Wall clock time and date at job start Tue Mar 31 2020 12:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.47153 * 2 1 4 4 C 1.35647 * 116.99780 * 179.97438 * 3 2 1 5 5 C 1.38710 * 120.15491 * 359.73168 * 4 3 2 6 6 C 1.38055 * 120.08659 * 179.71702 * 5 4 3 7 7 C 1.38548 * 120.38713 * 0.55808 * 6 5 4 8 8 C 1.37783 * 120.30466 * 359.71832 * 7 6 5 9 9 C 1.39710 * 119.90620 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.19454 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00315 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99917 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00479 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47403 * 185.13424 * 13 12 10 15 15 H 1.08999 * 109.87651 * 303.57592 * 14 13 12 16 16 C 1.54333 * 109.88246 * 64.58590 * 14 13 12 17 17 C 1.55158 * 102.93865 * 141.61206 * 16 14 13 18 18 C 1.54914 * 101.58513 * 324.49764 * 17 16 14 19 19 N 1.47022 * 109.88452 * 182.39694 * 14 13 12 20 20 C 1.36938 * 125.64950 * 61.61895 * 19 14 13 21 21 H 1.08004 * 119.99628 * 14.75816 * 20 19 14 22 22 C 1.38808 * 120.00090 * 194.75971 * 20 19 14 23 23 N 1.31621 * 120.00193 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99830 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46988 * 60.00633 * 24 22 20 26 26 H 1.48500 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47657 * 300.00110 * 24 22 20 28 28 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46837 * 300.00126 * 1 2 3 30 30 H 1.08997 * 109.46775 * 59.99638 * 1 2 3 31 31 H 1.08997 * 109.46775 * 120.00362 * 2 1 3 32 32 H 1.08997 * 109.46808 * 240.00404 * 2 1 3 33 33 H 1.08001 * 119.95187 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.80273 * 180.25072 * 6 5 4 35 35 H 1.08004 * 119.84677 * 179.70048 * 7 6 5 36 36 H 1.07994 * 120.05090 * 179.97438 * 8 7 6 37 37 H 0.97006 * 119.99571 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46306 * 305.13373 * 13 12 10 39 39 H 1.09002 * 109.47209 * 65.12881 * 13 12 10 40 40 H 1.08996 * 110.71916 * 259.96950 * 16 14 13 41 41 H 1.08996 * 110.71867 * 23.24965 * 16 14 13 42 42 H 1.08991 * 111.00943 * 82.57422 * 17 16 14 43 43 H 1.09000 * 111.00328 * 206.42756 * 17 16 14 44 44 H 1.08999 * 110.36754 * 155.85035 * 18 17 16 45 45 H 1.08996 * 110.36620 * 278.06497 * 18 17 16 46 46 H 0.97000 * 120.00195 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1991 0.4272 0.0067 6 6 5.5675 0.6096 0.0013 7 6 6.1043 1.8869 0.0014 8 6 5.2770 2.9887 0.0011 9 6 3.8903 2.8186 0.0011 10 6 2.9985 3.9939 0.0013 11 8 1.7922 3.8418 0.0018 12 7 3.5211 5.2363 0.0009 13 6 2.6357 6.4034 0.0016 14 6 3.4719 7.6780 -0.1281 15 1 4.2090 7.7209 0.6737 16 6 4.1839 7.7016 -1.4972 17 6 4.0986 9.1955 -1.9075 18 6 2.7123 9.5946 -1.3427 19 7 2.5969 8.8581 -0.0708 20 6 1.8053 9.2140 0.9884 21 1 1.9597 8.7579 1.9552 22 6 0.8045 10.1610 0.8196 23 7 0.6160 10.7164 -0.3587 24 14 -0.2758 10.6459 2.2643 25 1 0.5700 11.2072 3.3483 26 1 -1.2606 11.6670 1.8253 27 1 -0.9958 9.4488 2.7679 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.7881 -0.5715 0.0115 34 1 6.2234 -0.2484 0.0020 35 1 7.1762 2.0195 0.0021 36 1 5.6998 3.9824 0.0016 37 1 4.4835 5.3576 0.0009 38 1 1.9443 6.3353 -0.8383 39 1 2.0725 6.4317 0.9344 40 1 5.2229 7.3880 -1.3969 41 1 3.6579 7.0735 -2.2162 42 1 4.8932 9.7755 -1.4384 43 1 4.1249 9.3050 -2.9916 44 1 2.6705 10.6690 -1.1641 45 1 1.9218 9.2939 -2.0302 46 1 -0.0832 11.3784 -0.4766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028298376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:57 Heat of formation + Delta-G solvation = -24.814407 kcal Electronic energy + Delta-G solvation = -26644.473545 eV Core-core repulsion = 22921.051880 eV Total energy + Delta-G solvation = -3723.421665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59983 -38.92134 -37.65548 -37.32541 -34.14813 -32.46614 -32.15808 -31.42158 -29.77379 -29.50919 -28.45164 -25.03858 -24.38957 -24.14576 -22.83106 -21.79193 -20.41932 -19.99216 -19.56241 -18.54986 -17.30228 -16.53024 -16.28074 -16.26707 -15.43906 -15.09723 -14.91474 -14.74959 -14.55380 -14.12731 -13.81467 -13.53343 -13.48704 -13.07124 -12.84625 -12.75668 -12.17641 -12.14066 -12.03848 -11.86872 -11.78571 -11.66399 -11.26684 -11.19113 -10.93568 -10.91352 -10.74249 -10.19680 -10.09669 -9.90553 -9.80170 -9.68997 -9.43695 -9.25429 -8.59918 -8.52802 -8.32775 -6.80556 -5.73613 -3.10149 0.75744 1.20403 3.03329 3.03675 3.42519 3.47980 3.48552 3.53742 3.86130 4.49801 4.52171 4.55516 4.72663 4.81746 4.84056 5.00488 5.05072 5.15746 5.22965 5.37222 5.44633 5.51000 5.52968 5.61547 5.65048 5.67340 5.84771 5.90268 5.99774 6.04597 6.12273 6.19367 6.20943 6.28528 6.48747 6.49846 6.60021 6.67166 6.78487 6.89172 7.11974 7.27672 7.54308 7.64255 7.81883 7.91879 8.28943 8.64745 9.20677 9.81260 10.48813 11.38459 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.003207 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.717745 B = 8729.223494 C = 9979.181673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.277 6.277 4 C 0.185 3.815 5 C -0.223 4.223 6 C -0.058 4.058 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.166 4.166 10 C 0.550 3.450 11 O -0.520 6.520 12 N -0.722 5.722 13 C 0.112 3.888 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.126 4.126 17 C -0.148 4.148 18 C 0.173 3.827 19 N -0.589 5.589 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.001 4.001 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.392 0.608 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.280 -21.127 -1.612 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.188 6.188 4 C 0.136 3.864 5 C -0.242 4.242 6 C -0.077 4.077 7 C -0.188 4.188 8 C -0.067 4.067 9 C -0.170 4.170 10 C 0.336 3.664 11 O -0.397 6.397 12 N -0.374 5.374 13 C -0.013 4.013 14 C 0.043 3.957 15 H 0.054 0.946 16 C -0.164 4.164 17 C -0.187 4.187 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.362 4.362 21 H 0.093 0.907 22 C -0.198 4.198 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.226 0.774 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.991 -20.870 -1.577 23.192 hybrid contribution -0.052 -0.029 0.724 0.727 sum 9.939 -20.900 -0.852 23.158 Atomic orbital electron populations 1.21743 0.92466 1.02389 1.04213 1.22874 0.96507 0.82299 1.00968 1.86423 1.17698 1.28254 1.86398 1.19051 0.83216 0.92659 0.91452 1.21233 0.94395 0.97938 1.10657 1.21083 0.94222 0.97485 0.94871 1.20972 1.00084 0.92180 1.05519 1.21218 0.91254 0.99589 0.94621 1.19558 0.93736 0.91677 1.12030 1.17984 0.87923 0.82808 0.77635 1.90830 1.14373 1.85835 1.48649 1.46043 1.10332 1.05860 1.75208 1.22207 0.93319 0.83303 1.02511 1.21128 0.92373 0.87081 0.95079 0.94552 1.22608 0.98882 0.97728 0.97203 1.23004 1.00999 0.95326 0.99388 1.21445 0.89907 0.97717 0.86145 1.44472 1.50033 1.21644 1.15138 1.18944 1.08736 1.20298 0.88263 0.90703 1.24909 0.97968 1.00100 0.96833 1.69928 1.34282 1.30626 1.21365 0.86228 0.80304 0.77946 0.81474 1.21078 1.21573 1.20941 0.90612 0.91243 0.91253 0.92156 0.92154 0.85045 0.85515 0.85330 0.84885 0.77406 0.91589 0.91576 0.92453 0.91784 0.92322 0.92369 0.91021 0.95606 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.28 -4.12 8.21 -40.52 -0.33 -4.45 16 4 C 0.18 2.51 6.70 -38.69 -0.26 2.25 16 5 C -0.22 -2.23 9.03 -39.47 -0.36 -2.59 16 6 C -0.06 -0.49 10.03 -39.53 -0.40 -0.89 16 7 C -0.17 -1.47 10.02 -39.63 -0.40 -1.86 16 8 C -0.05 -0.51 9.54 -39.20 -0.37 -0.88 16 9 C -0.17 -2.36 5.89 -104.84 -0.62 -2.98 16 10 C 0.55 9.79 7.76 -12.47 -0.10 9.69 16 11 O -0.52 -11.48 15.16 -16.59 -0.25 -11.73 16 12 N -0.72 -11.75 5.28 -61.35 -0.32 -12.07 16 13 C 0.11 2.26 5.07 -4.05 -0.02 2.24 16 14 C 0.15 3.06 3.22 -66.95 -0.22 2.84 16 15 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 16 C -0.13 -2.14 6.10 -24.89 -0.15 -2.29 16 17 C -0.15 -2.75 7.08 -24.58 -0.17 -2.93 16 18 C 0.17 4.17 5.41 -2.52 -0.01 4.16 16 19 N -0.59 -14.84 3.13 -162.57 -0.51 -15.35 16 20 C -0.23 -6.51 9.76 -15.06 -0.15 -6.65 16 21 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 22 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 23 N -0.92 -26.97 10.58 55.49 0.59 -26.38 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 33 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.13 1.12 6.40 -52.49 -0.34 0.78 16 37 H 0.39 5.02 6.37 -40.82 -0.26 4.76 16 38 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 39 H 0.07 1.51 7.92 -51.93 -0.41 1.10 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.09 7.81 -51.93 -0.41 0.69 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 45 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.32 372.49 -10.06 -44.38 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.09 Total: 2.96 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.73 Total: -0.34 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.25 Total: -53.80 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.58 Total: -16.18 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.32 -10.06 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028298376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.568 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds