Wall clock time and date at job start Tue Mar 31 2020 12:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42903 * 109.47153 * 2 1 4 4 C 1.35647 * 116.99780 * 179.97438 * 3 2 1 5 5 C 1.38710 * 120.15491 * 359.73168 * 4 3 2 6 6 C 1.38055 * 120.08659 * 179.71702 * 5 4 3 7 7 C 1.38548 * 120.38713 * 0.55808 * 6 5 4 8 8 C 1.37783 * 120.30466 * 359.71832 * 7 6 5 9 9 C 1.39710 * 119.90620 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.19454 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00315 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99917 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00479 * 180.02562 * 12 10 9 14 14 C 1.52990 * 109.47403 * 185.13424 * 13 12 10 15 15 H 1.08999 * 109.87651 * 303.57592 * 14 13 12 16 16 C 1.54333 * 109.88246 * 64.58590 * 14 13 12 17 17 C 1.55158 * 102.93865 * 141.61206 * 16 14 13 18 18 C 1.54914 * 101.58513 * 324.49764 * 17 16 14 19 19 N 1.47022 * 109.88452 * 182.39694 * 14 13 12 20 20 C 1.36938 * 125.64950 * 61.61895 * 19 14 13 21 21 H 1.08004 * 119.99628 * 14.75816 * 20 19 14 22 22 C 1.38808 * 120.00090 * 194.75971 * 20 19 14 23 23 N 1.31621 * 120.00193 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99830 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46988 * 60.00633 * 24 22 20 26 26 H 1.48500 * 109.47318 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47657 * 300.00110 * 24 22 20 28 28 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46837 * 300.00126 * 1 2 3 30 30 H 1.08997 * 109.46775 * 59.99638 * 1 2 3 31 31 H 1.08997 * 109.46775 * 120.00362 * 2 1 3 32 32 H 1.08997 * 109.46808 * 240.00404 * 2 1 3 33 33 H 1.08001 * 119.95187 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.80273 * 180.25072 * 6 5 4 35 35 H 1.08004 * 119.84677 * 179.70048 * 7 6 5 36 36 H 1.07994 * 120.05090 * 179.97438 * 8 7 6 37 37 H 0.97006 * 119.99571 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46306 * 305.13373 * 13 12 10 39 39 H 1.09002 * 109.47209 * 65.12881 * 13 12 10 40 40 H 1.08996 * 110.71916 * 259.96950 * 16 14 13 41 41 H 1.08996 * 110.71867 * 23.24965 * 16 14 13 42 42 H 1.08991 * 111.00943 * 82.57422 * 17 16 14 43 43 H 1.09000 * 111.00328 * 206.42756 * 17 16 14 44 44 H 1.08999 * 110.36754 * 155.85035 * 18 17 16 45 45 H 1.08996 * 110.36620 * 278.06497 * 18 17 16 46 46 H 0.97000 * 120.00195 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5250 0.0005 5 6 4.1991 0.4272 0.0067 6 6 5.5675 0.6096 0.0013 7 6 6.1043 1.8869 0.0014 8 6 5.2770 2.9887 0.0011 9 6 3.8903 2.8186 0.0011 10 6 2.9985 3.9939 0.0013 11 8 1.7922 3.8418 0.0018 12 7 3.5211 5.2363 0.0009 13 6 2.6357 6.4034 0.0016 14 6 3.4719 7.6780 -0.1281 15 1 4.2090 7.7209 0.6737 16 6 4.1839 7.7016 -1.4972 17 6 4.0986 9.1955 -1.9075 18 6 2.7123 9.5946 -1.3427 19 7 2.5969 8.8581 -0.0708 20 6 1.8053 9.2140 0.9884 21 1 1.9597 8.7579 1.9552 22 6 0.8045 10.1610 0.8196 23 7 0.6160 10.7164 -0.3587 24 14 -0.2758 10.6459 2.2643 25 1 0.5700 11.2072 3.3483 26 1 -1.2606 11.6670 1.8253 27 1 -0.9958 9.4488 2.7679 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.7881 -0.5715 0.0115 34 1 6.2234 -0.2484 0.0020 35 1 7.1762 2.0195 0.0021 36 1 5.6998 3.9824 0.0016 37 1 4.4835 5.3576 0.0009 38 1 1.9443 6.3353 -0.8383 39 1 2.0725 6.4317 0.9344 40 1 5.2229 7.3880 -1.3969 41 1 3.6579 7.0735 -2.2162 42 1 4.8932 9.7755 -1.4384 43 1 4.1249 9.3050 -2.9916 44 1 2.6705 10.6690 -1.1641 45 1 1.9218 9.2939 -2.0302 46 1 -0.0832 11.3784 -0.4766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028298376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:56 Heat of formation + Delta-G solvation = -46.638786 kcal Electronic energy + Delta-G solvation = -26645.419921 eV Core-core repulsion = 22921.051880 eV Total energy + Delta-G solvation = -3724.368041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58426 -40.24272 -39.16424 -38.32774 -35.74347 -34.42078 -32.96764 -32.37238 -31.36217 -30.58335 -30.03039 -26.79249 -25.92293 -25.09923 -24.00834 -22.57867 -22.04146 -21.39875 -21.16289 -19.60215 -18.77418 -18.06538 -17.48304 -17.13036 -16.91128 -16.40884 -16.20575 -16.08057 -15.75037 -15.59287 -15.39931 -14.74990 -14.37433 -14.31137 -14.17231 -13.95186 -13.65956 -13.41972 -13.41000 -13.01416 -12.90711 -12.88330 -12.86934 -12.66256 -12.53224 -12.06691 -11.98920 -11.86785 -11.72772 -11.68088 -11.49289 -11.40441 -10.86118 -10.68471 -10.19325 -9.93255 -9.20334 -8.87110 -7.89694 -5.27410 -0.10538 0.44124 1.42428 1.46633 1.51965 1.93736 2.15060 2.26792 2.49350 2.88959 3.29836 3.64269 3.79275 3.80114 3.94972 3.98393 4.00079 4.01159 4.18448 4.24118 4.27246 4.34060 4.44138 4.44884 4.50937 4.54138 4.72176 4.81114 4.87258 4.87562 4.96517 4.99487 5.13894 5.14585 5.20857 5.24494 5.35663 5.37936 5.45536 5.49199 5.57192 5.65853 5.77260 5.81720 6.21995 6.44422 6.65324 7.08000 7.32181 7.75034 8.41011 9.21169 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.003207 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.717745 B = 8729.223494 C = 9979.181673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.320 6.320 4 C 0.159 3.841 5 C -0.224 4.224 6 C -0.045 4.045 7 C -0.163 4.163 8 C -0.046 4.046 9 C -0.202 4.202 10 C 0.546 3.454 11 O -0.578 6.578 12 N -0.705 5.705 13 C 0.133 3.867 14 C 0.149 3.851 15 H 0.055 0.945 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.173 3.827 19 N -0.611 5.611 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.972 3.028 25 H -0.271 1.271 26 H -0.292 1.292 27 H -0.284 1.284 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.413 0.587 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.037 0.963 45 H -0.011 1.011 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.374 -23.770 -1.411 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.232 6.232 4 C 0.111 3.889 5 C -0.242 4.242 6 C -0.063 4.063 7 C -0.181 4.181 8 C -0.065 4.065 9 C -0.206 4.206 10 C 0.335 3.665 11 O -0.458 6.458 12 N -0.359 5.359 13 C 0.006 3.994 14 C 0.042 3.958 15 H 0.072 0.928 16 C -0.151 4.151 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.335 5.335 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.800 3.200 25 H -0.197 1.197 26 H -0.218 1.218 27 H -0.211 1.211 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.173 0.827 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.251 0.749 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.007 0.993 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.164 -23.540 -1.369 27.506 hybrid contribution -1.254 0.647 0.669 1.561 sum 12.910 -22.892 -0.700 26.291 Atomic orbital electron populations 1.21793 0.92673 1.03963 1.02338 1.23147 0.96468 0.80941 1.02763 1.86377 1.19040 1.30944 1.86867 1.19441 0.83288 0.93618 0.92581 1.21534 0.94924 0.97827 1.09917 1.21628 0.93860 0.98902 0.91898 1.21428 1.01608 0.91493 1.03521 1.21485 0.89632 1.01595 0.93768 1.19441 0.94746 0.90271 1.16120 1.18705 0.87856 0.83929 0.76026 1.90791 1.17077 1.86668 1.51313 1.45714 1.10828 1.04467 1.74874 1.21653 0.93293 0.85332 0.99114 1.21345 0.91699 0.84834 0.97968 0.92771 1.22603 1.01254 0.96642 0.94552 1.22868 0.97156 0.96272 1.00740 1.21270 0.92647 0.95677 0.85563 1.44751 1.50185 1.23871 1.14714 1.19272 1.08962 1.19683 0.89281 0.90669 1.25694 0.99556 1.00727 0.99312 1.70135 1.34747 1.31301 1.23139 0.85254 0.78565 0.77270 0.78886 1.19685 1.21763 1.21092 0.87234 0.93135 0.93080 0.90234 0.90172 0.82741 0.81597 0.81741 0.82896 0.74938 0.95035 0.95233 0.87332 0.92052 0.90789 0.89906 0.94463 0.99293 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.32 -9.89 8.21 -68.70 -0.56 -10.45 16 4 C 0.16 4.24 6.70 22.85 0.15 4.39 16 5 C -0.22 -3.80 9.03 22.34 0.20 -3.60 16 6 C -0.04 -0.53 10.03 22.30 0.22 -0.31 16 7 C -0.16 -2.01 10.02 22.24 0.22 -1.79 16 8 C -0.05 -0.84 9.54 22.52 0.21 -0.62 16 9 C -0.20 -5.63 5.89 -20.01 -0.12 -5.75 16 10 C 0.55 20.12 7.76 86.69 0.67 20.80 16 11 O -0.58 -27.46 15.16 16.92 0.26 -27.21 16 12 N -0.71 -23.01 5.28 -466.28 -2.46 -25.47 16 13 C 0.13 5.59 5.07 86.38 0.44 6.03 16 14 C 0.15 5.94 3.22 45.34 0.15 6.09 16 15 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 16 C -0.11 -3.53 6.10 31.79 0.19 -3.34 16 17 C -0.13 -4.64 7.08 31.99 0.23 -4.41 16 18 C 0.17 8.65 5.41 86.86 0.47 9.12 16 19 N -0.61 -31.67 3.13 -668.25 -2.09 -33.76 16 20 C -0.24 -13.98 9.76 84.03 0.82 -13.16 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.06 -3.47 5.47 84.86 0.46 -3.01 16 23 N -0.95 -58.39 10.58 21.65 0.23 -58.17 16 24 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 28 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.18 7.65 -2.39 -0.02 1.17 16 32 H 0.08 1.18 7.68 -2.39 -0.02 1.17 16 33 H 0.16 1.78 6.30 -2.91 -0.02 1.77 16 34 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.15 1.97 6.40 -2.91 -0.02 1.95 16 37 H 0.41 9.70 6.37 -92.70 -0.59 9.11 16 38 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.03 1.44 7.92 -2.39 -0.02 1.42 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.06 1.98 7.81 -2.39 -0.02 1.97 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.04 2.08 6.94 -2.39 -0.02 2.06 16 45 H -0.01 -0.62 8.06 -2.39 -0.02 -0.64 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -83.63 372.49 3.25 -80.38 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.39 Total: 15.53 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.46 Total: 9.51 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -4.32 Total: -117.40 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.31 Total: -37.66 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -83.63 3.25 -80.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028298376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.741 kcal (2) G-P(sol) polarization free energy of solvation -83.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds