Wall clock time and date at job start Tue Mar 31 2020 12:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 119.99689 * 2 1 4 4 N 1.34782 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99920 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46852 * 180.02562 * 5 4 2 7 7 H 1.08996 * 110.87376 * 57.39054 * 6 5 4 8 8 C 1.55137 * 110.98895 * 293.54811 * 6 5 4 9 9 C 1.54318 * 103.01742 * 206.21676 * 8 6 5 10 10 N 1.47446 * 107.23367 * 22.28417 * 9 8 6 11 11 C 1.46900 * 110.99757 * 123.25880 * 10 9 8 12 12 C 1.50698 * 109.47360 * 69.87445 * 11 10 9 13 13 C 1.38297 * 119.92955 * 89.99891 * 12 11 10 14 14 C 1.38095 * 120.07045 * 179.97438 * 13 12 11 15 15 C 1.38880 * 119.93329 * 0.02562 * 14 13 12 16 16 O 1.35747 * 120.07665 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99336 * 5.53207 * 16 15 14 18 18 H 1.07999 * 120.00433 * 354.94914 * 17 16 15 19 19 C 1.38659 * 119.99510 * 174.94088 * 17 16 15 20 20 N 1.31553 * 120.00471 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47160 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.46871 * 300.00279 * 21 19 17 24 24 H 1.48500 * 109.47284 * 60.00125 * 21 19 17 25 25 C 1.38884 * 119.85707 * 0.27286 * 15 14 13 26 26 C 1.38106 * 119.92940 * 359.44862 * 25 15 14 27 27 C 1.47845 * 108.56243 * 0.99139 * 10 9 8 28 28 H 1.08997 * 109.47024 * 240.00077 * 1 2 3 29 29 H 1.08997 * 109.46905 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46374 * 120.00022 * 1 2 3 31 31 H 0.96993 * 119.99524 * 0.02562 * 4 2 1 32 32 H 1.09000 * 109.46560 * 60.00561 * 5 4 2 33 33 H 1.08997 * 109.47203 * 300.00283 * 5 4 2 34 34 H 1.09003 * 110.70585 * 87.83451 * 8 6 5 35 35 H 1.08993 * 110.85942 * 324.67083 * 8 6 5 36 36 H 1.09006 * 109.88974 * 262.87996 * 9 8 6 37 37 H 1.09003 * 109.89119 * 141.69325 * 9 8 6 38 38 H 1.09003 * 109.47212 * 309.87384 * 11 10 9 39 39 H 1.09002 * 109.46870 * 189.87533 * 11 10 9 40 40 H 1.08003 * 119.96594 * 0.02562 * 13 12 11 41 41 H 1.08001 * 120.03823 * 180.02562 * 14 13 12 42 42 H 0.97006 * 119.99673 * 359.97438 * 20 19 17 43 43 H 1.07995 * 120.03547 * 179.72775 * 25 15 14 44 44 H 1.07999 * 119.96276 * 180.27162 * 26 25 15 45 45 H 1.08994 * 110.37391 * 94.73722 * 27 10 9 46 46 H 1.09005 * 110.36579 * 217.07299 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1560 -2.6096 0.0010 7 1 3.7684 -3.1586 -0.8572 8 6 3.7952 -3.3267 1.3285 9 6 4.8902 -4.4074 1.4486 10 7 6.0338 -3.9633 0.6307 11 6 7.2582 -3.8813 1.4382 12 6 7.7081 -5.2704 1.8111 13 6 8.5757 -5.9600 0.9840 14 6 8.9902 -7.2329 1.3231 15 6 8.5345 -7.8206 2.4960 16 8 8.9404 -9.0715 2.8325 17 6 9.8742 -9.6441 2.0462 18 1 10.2048 -9.1435 1.1481 19 6 10.4102 -10.8756 2.3908 20 7 10.0073 -11.4856 3.4845 21 14 11.7044 -11.6686 1.3019 22 1 12.1117 -12.9717 1.8859 23 1 11.1423 -11.8888 -0.0549 24 1 12.8875 -10.7759 1.2087 25 6 7.6583 -7.1279 3.3214 26 6 7.2520 -5.8530 2.9795 27 6 5.7041 -2.6516 0.0334 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 4.0089 -0.6531 0.8912 33 1 4.0096 -0.6534 -0.8888 34 1 2.8079 -3.7841 1.2634 35 1 3.8430 -2.6345 2.1690 36 1 4.5142 -5.3596 1.0743 37 1 5.1967 -4.5107 2.4896 38 1 7.0585 -3.3086 2.3439 39 1 8.0412 -3.3883 0.8619 40 1 8.9302 -5.5023 0.0722 41 1 9.6681 -7.7708 0.6770 42 1 9.3355 -11.0736 4.0502 43 1 7.2987 -7.5839 4.2319 44 1 6.5742 -5.3121 3.6232 45 1 6.0928 -1.8439 0.6535 46 1 6.1069 -2.5829 -0.9771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028361170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:05 Heat of formation + Delta-G solvation = -71.082075 kcal Electronic energy + Delta-G solvation = -25491.908655 eV Core-core repulsion = 21766.480674 eV Total energy + Delta-G solvation = -3725.427981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09203 -40.72206 -39.92910 -38.35095 -36.10705 -34.43038 -33.48246 -31.91577 -31.39514 -30.36798 -29.83875 -27.23759 -26.33535 -25.15870 -23.64892 -22.64549 -21.92967 -21.23321 -21.14268 -20.25917 -18.70240 -17.85301 -17.59235 -17.03730 -16.82578 -16.36096 -16.29610 -16.10109 -15.70204 -15.59456 -15.21633 -15.08775 -14.77017 -14.49752 -14.31387 -14.20559 -13.91305 -13.59149 -13.40096 -13.23125 -12.96830 -12.91639 -12.82003 -12.42447 -12.34815 -12.14919 -11.97046 -11.95332 -11.92926 -11.84559 -11.57512 -11.25283 -10.97939 -10.75164 -10.12019 -9.83477 -9.26118 -8.98727 -8.92787 -6.24297 0.53457 0.61404 1.48596 1.60931 1.64784 1.78737 2.26812 2.35827 2.74309 3.04570 3.25185 3.33827 3.58888 3.73893 3.79491 3.98358 4.00630 4.02009 4.13633 4.29408 4.32738 4.40673 4.44953 4.53715 4.54744 4.62569 4.67474 4.71023 4.75187 4.76582 4.82967 4.95534 4.99046 5.05734 5.12335 5.15931 5.21770 5.25127 5.32878 5.45050 5.50651 5.71268 5.75658 6.04216 6.09515 6.14284 6.29869 6.57264 6.86514 7.26488 7.62840 8.50541 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.001913 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.638330 B =14636.235184 C =14841.372912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.718 5.718 5 C 0.134 3.866 6 C -0.095 4.095 7 H 0.099 0.901 8 C -0.128 4.128 9 C 0.037 3.963 10 N -0.537 5.537 11 C 0.110 3.890 12 C -0.147 4.147 13 C -0.051 4.051 14 C -0.241 4.241 15 C 0.115 3.885 16 O -0.254 6.254 17 C -0.487 4.487 18 H 0.090 0.910 19 C -0.045 4.045 20 N -0.917 5.917 21 Si 1.145 2.855 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.260 1.260 25 C -0.204 4.204 26 C -0.059 4.059 27 C 0.049 3.951 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.417 0.583 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.259 0.741 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.054 0.946 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.166 20.960 -8.325 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.291 3.709 3 O -0.488 6.488 4 N -0.370 5.370 5 C 0.010 3.990 6 C -0.114 4.114 7 H 0.117 0.883 8 C -0.166 4.166 9 C -0.090 4.090 10 N -0.262 5.262 11 C -0.017 4.017 12 C -0.148 4.148 13 C -0.070 4.070 14 C -0.260 4.260 15 C 0.065 3.935 16 O -0.161 6.161 17 C -0.563 4.563 18 H 0.108 0.892 19 C -0.241 4.241 20 N -0.552 5.552 21 Si 0.960 3.040 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.185 1.185 25 C -0.223 4.223 26 C -0.077 4.077 27 C -0.079 4.079 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.072 0.928 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.738 19.842 -8.681 26.772 hybrid contribution -1.060 1.114 1.149 1.919 sum -16.798 20.955 -7.533 27.893 Atomic orbital electron populations 1.21931 0.88309 1.05927 1.06465 1.21602 0.92320 0.82824 0.74204 1.90714 1.72329 1.33462 1.52246 1.45977 1.07155 1.09262 1.74631 1.21155 0.80262 0.96002 1.01611 1.22411 0.95321 0.94385 0.99325 0.88317 1.22832 0.99617 0.97246 0.96950 1.22874 0.90723 0.98756 0.96664 1.63577 1.02944 1.26791 1.32838 1.20965 0.92807 0.91590 0.96331 1.19604 1.01375 0.97955 0.95875 1.20910 0.95303 0.92206 0.98569 1.21268 1.07334 0.98600 0.98835 1.19822 0.94509 0.84801 0.94357 1.83640 1.53998 1.25740 1.52764 1.22573 1.19745 1.06429 1.07533 0.89217 1.28386 1.02471 0.93365 0.99895 1.70716 1.30241 1.40517 1.13746 0.82592 0.72346 0.75858 0.73186 1.19790 1.18465 1.18506 1.20431 1.03798 0.96902 1.01182 1.20872 0.97756 0.92605 0.96485 1.23032 0.94509 0.89703 1.00645 0.87111 0.89643 0.87030 0.74579 0.92562 0.91995 0.88948 0.91147 0.91841 0.92625 0.93110 0.89417 0.84510 0.86708 0.93217 0.86844 0.83809 0.92763 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.32 71.24 0.74 -0.20 16 2 C 0.50 7.37 7.94 87.66 0.70 8.06 16 3 O -0.61 -15.64 17.09 -3.04 -0.05 -15.70 16 4 N -0.72 -7.23 5.41 -463.04 -2.50 -9.73 16 5 C 0.13 1.70 5.12 86.38 0.44 2.14 16 6 C -0.10 -1.08 3.10 -9.41 -0.03 -1.10 16 7 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 8 C -0.13 -1.51 6.11 31.77 0.19 -1.32 16 9 C 0.04 0.70 6.26 86.65 0.54 1.24 16 10 N -0.54 -10.93 5.15 -890.09 -4.58 -15.51 16 11 C 0.11 2.44 4.75 85.56 0.41 2.84 16 12 C -0.15 -4.46 5.11 -19.84 -0.10 -4.56 16 13 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 14 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 15 C 0.11 5.75 6.65 22.58 0.15 5.90 16 16 O -0.25 -15.26 9.16 -22.72 -0.21 -15.47 16 17 C -0.49 -28.85 9.49 67.92 0.64 -28.21 16 18 H 0.09 4.97 5.20 -2.91 -0.02 4.95 16 19 C -0.05 -2.63 5.49 84.84 0.47 -2.16 16 20 N -0.92 -57.90 13.70 21.61 0.30 -57.60 16 21 Si 1.14 48.51 29.92 68.60 2.05 50.57 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 C -0.20 -8.54 9.99 22.39 0.22 -8.31 16 26 C -0.06 -1.90 8.73 22.25 0.19 -1.71 16 27 C 0.05 0.73 6.15 86.77 0.53 1.26 16 28 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.42 1.68 8.34 -92.71 -0.77 0.91 16 32 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.85 8.02 -2.39 -0.02 0.83 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.06 1.09 5.49 -2.39 -0.01 1.07 16 38 H 0.05 1.01 7.90 -2.39 -0.02 0.99 16 39 H 0.09 1.76 8.01 -2.39 -0.02 1.74 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 42 H 0.26 17.07 7.97 -92.70 -0.74 16.33 16 43 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.14 3.62 6.91 -2.91 -0.02 3.60 16 45 H 0.05 0.77 7.71 -2.39 -0.02 0.75 16 46 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -79.81 376.35 0.77 -79.04 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.25 Total: 22.62 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 5.52 Total: -38.22 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -6.79 Total: -82.84 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.26 Total: -31.16 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.05 Total: 50.57 kcal Total: -79.81 0.77 -79.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.956 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds