Wall clock time and date at job start Tue Mar 31 2020 12:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21286 * 119.99887 * 2 1 4 4 N 1.34777 * 120.00242 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00106 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47221 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.28243 * 304.32457 * 6 5 4 8 8 C 1.54256 * 110.32441 * 66.45324 * 6 5 4 9 9 C 1.54379 * 105.05791 * 118.89910 * 8 6 5 10 10 N 1.48557 * 104.59797 * 23.85268 * 9 8 6 11 11 C 1.46897 * 111.00314 * 200.96188 * 10 9 8 12 12 C 1.50706 * 109.47236 * 69.87015 * 11 10 9 13 13 C 1.38300 * 119.93212 * 269.73110 * 12 11 10 14 14 C 1.38097 * 120.06850 * 179.72687 * 13 12 11 15 15 C 1.38879 * 119.92736 * 0.56332 * 14 13 12 16 16 O 1.35755 * 120.06763 * 179.68235 * 15 14 13 17 17 C 1.34829 * 116.99808 * 174.48949 * 16 15 14 18 18 H 1.07999 * 120.00369 * 5.05971 * 17 16 15 19 19 C 1.38656 * 119.99679 * 185.05882 * 17 16 15 20 20 N 1.31559 * 119.99877 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00297 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47011 * 89.99857 * 21 19 17 23 23 H 1.48492 * 109.47187 * 210.00059 * 21 19 17 24 24 H 1.48498 * 109.46582 * 329.99912 * 21 19 17 25 25 C 1.38883 * 119.86665 * 359.70882 * 15 14 13 26 26 C 1.38094 * 119.92617 * 359.97438 * 25 15 14 27 27 C 1.48564 * 104.22038 * 320.51849 * 10 9 8 28 28 H 1.08996 * 109.46758 * 239.99253 * 1 2 3 29 29 H 1.08996 * 109.46914 * 119.99618 * 1 2 3 30 30 H 1.08997 * 109.46943 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99775 * 0.02562 * 4 2 1 32 32 H 1.08996 * 109.47507 * 299.99991 * 5 4 2 33 33 H 1.09005 * 109.46843 * 59.99810 * 5 4 2 34 34 H 1.09003 * 110.32269 * 237.79449 * 8 6 5 35 35 H 1.08994 * 110.32467 * 359.90235 * 8 6 5 36 36 H 1.08995 * 110.41212 * 142.63489 * 9 8 6 37 37 H 1.09004 * 110.40945 * 265.07327 * 9 8 6 38 38 H 1.08997 * 109.47789 * 189.87679 * 11 10 9 39 39 H 1.09005 * 109.47126 * 309.87342 * 11 10 9 40 40 H 1.07998 * 119.96372 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.03725 * 180.27024 * 14 13 12 42 42 H 0.96995 * 120.00059 * 180.02562 * 20 19 17 43 43 H 1.07993 * 120.03650 * 179.97438 * 25 15 14 44 44 H 1.08007 * 119.96679 * 179.97438 * 26 25 15 45 45 H 1.09000 * 110.40814 * 280.70167 * 27 10 9 46 46 H 1.09001 * 110.40817 * 158.26184 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0023 7 1 3.7387 -3.1586 0.8419 8 6 3.7892 -3.3065 -1.3287 9 6 5.1413 -3.6923 -1.9662 10 7 6.0856 -3.7715 -0.8222 11 6 7.4760 -3.6375 -1.2769 12 6 7.7194 -2.2238 -1.7389 13 6 7.5026 -1.8830 -3.0616 14 6 7.7193 -0.5871 -3.4866 15 6 8.1667 0.3716 -2.5869 16 8 8.3868 1.6449 -3.0031 17 6 8.7097 2.5506 -2.0580 18 1 8.8631 2.2343 -1.0368 19 6 8.8449 3.8883 -2.3972 20 7 9.1604 4.7720 -1.4751 21 14 8.5790 4.4356 -4.1633 22 1 7.1498 4.7859 -4.3631 23 1 9.4240 5.6235 -4.4459 24 1 8.9518 3.3324 -5.0847 25 6 8.3889 0.0250 -1.2605 26 6 8.1640 -1.2711 -0.8402 27 6 5.6987 -2.6329 0.0501 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 1.0276 0.0005 31 1 1.6960 -2.0072 -0.0013 32 1 4.0089 -0.6531 -0.8910 33 1 4.0095 -0.6534 0.8889 34 1 3.1935 -4.1987 -1.1355 35 1 3.2444 -2.6215 -1.9782 36 1 5.0649 -4.6590 -2.4638 37 1 5.4617 -2.9252 -2.6712 38 1 8.1516 -3.8724 -0.4545 39 1 7.6561 -4.3256 -2.1029 40 1 7.1596 -2.6302 -3.7618 41 1 7.5457 -0.3205 -4.5187 42 1 9.2546 5.7078 -1.7122 43 1 8.7372 0.7681 -0.5586 44 1 8.3370 -1.5415 0.1911 45 1 6.1064 -1.7000 -0.3394 46 1 6.0420 -2.8021 1.0706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028361171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:09 Heat of formation + Delta-G solvation = -34.311522 kcal Electronic energy + Delta-G solvation = -26902.852771 eV Core-core repulsion = 23179.019281 eV Total energy + Delta-G solvation = -3723.833490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18153 -39.49929 -38.63172 -36.71075 -35.00232 -32.73672 -32.26813 -30.70280 -30.30816 -29.05238 -28.82429 -26.04185 -25.15884 -23.96471 -22.21948 -21.47501 -20.61345 -20.17341 -19.99390 -17.91442 -17.28854 -17.04912 -16.52454 -15.96390 -15.45478 -15.36168 -14.96198 -14.72254 -14.33023 -14.02218 -13.86478 -13.73653 -13.54044 -13.31595 -12.97790 -12.83541 -12.67696 -12.52507 -12.27822 -12.19806 -12.12148 -11.76832 -11.36681 -11.23980 -11.18839 -11.11119 -10.90771 -10.74689 -10.66857 -10.55769 -10.18361 -9.94730 -9.42457 -9.16059 -8.88025 -8.40456 -8.28613 -7.37598 -6.43543 -4.10281 2.04309 2.10166 2.57896 3.10281 3.21161 3.25807 3.38853 4.10355 4.22324 4.40593 4.55515 4.59315 4.70059 4.79755 4.81211 5.04568 5.08299 5.12942 5.16950 5.24957 5.30927 5.38066 5.46298 5.56846 5.59818 5.63607 5.68837 5.71170 5.81425 5.85358 5.93927 6.03148 6.06688 6.08272 6.17043 6.26509 6.35555 6.49115 6.70083 6.82966 6.93329 7.07442 7.19113 7.24218 7.38728 7.55157 7.76387 8.00544 8.15603 8.91316 9.52116 10.63911 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.004249 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.205260 B = 6588.787535 C = 8653.384137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.503 3.497 3 O -0.538 6.538 4 N -0.731 5.731 5 C 0.123 3.877 6 C -0.101 4.101 7 H 0.081 0.919 8 C -0.120 4.120 9 C 0.023 3.977 10 N -0.502 5.502 11 C 0.095 3.905 12 C -0.215 4.215 13 C -0.067 4.067 14 C -0.194 4.194 15 C 0.163 3.837 16 O -0.215 6.215 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.876 5.876 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.260 1.260 25 C -0.221 4.221 26 C -0.060 4.060 27 C 0.026 3.974 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.399 0.601 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.280 0.720 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.713 -18.065 1.873 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.290 3.710 3 O -0.415 6.415 4 N -0.384 5.384 5 C 0.000 4.000 6 C -0.120 4.120 7 H 0.100 0.900 8 C -0.159 4.159 9 C -0.105 4.105 10 N -0.225 5.225 11 C -0.032 4.032 12 C -0.217 4.217 13 C -0.086 4.086 14 C -0.214 4.214 15 C 0.111 3.889 16 O -0.119 6.119 17 C -0.466 4.466 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.514 5.514 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.240 4.240 26 C -0.079 4.079 27 C -0.102 4.102 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.232 0.768 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.151 0.849 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.239 -17.467 1.988 22.008 hybrid contribution -0.136 0.814 -0.962 1.268 sum -13.375 -16.653 1.026 21.384 Atomic orbital electron populations 1.21911 0.91850 1.05527 1.03991 1.20839 0.90592 0.83614 0.76000 1.90803 1.70785 1.31328 1.48565 1.46044 1.07581 1.08589 1.76163 1.21470 0.79187 0.96351 1.03032 1.22098 0.96671 0.94609 0.98651 0.90049 1.22380 0.97413 1.00061 0.96000 1.23197 0.91982 1.01152 0.94186 1.65820 1.02559 1.40065 1.14013 1.21078 0.89751 0.92532 0.99863 1.19892 1.10529 0.96846 0.94438 1.20495 0.98513 0.94850 0.94695 1.20199 1.09202 0.92682 0.99281 1.19137 0.92311 0.85241 0.92252 1.83572 1.76582 1.14728 1.37049 1.20769 1.47928 0.86937 0.90982 0.87580 1.24470 0.95616 0.94209 0.99576 1.69641 1.45426 1.02835 1.33455 0.86191 0.78737 0.78508 0.83550 1.19792 1.20687 1.18388 1.21285 1.08802 0.97320 0.96592 1.20668 0.96575 0.92553 0.98071 1.23308 0.93030 0.95390 0.98468 0.89571 0.89535 0.89002 0.76752 0.91000 0.91238 0.91289 0.91241 0.90630 0.92344 0.90468 0.90820 0.87149 0.86643 0.90968 0.84923 0.87297 0.90597 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.32 36.01 0.37 -0.87 16 2 C 0.50 6.11 7.94 -10.98 -0.09 6.03 16 3 O -0.54 -9.79 17.09 5.55 0.09 -9.70 16 4 N -0.73 -7.20 5.32 -60.29 -0.32 -7.52 16 5 C 0.12 1.50 4.76 -4.04 -0.02 1.48 16 6 C -0.10 -1.01 3.13 -89.24 -0.28 -1.29 16 7 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.12 -1.12 6.33 -25.35 -0.16 -1.28 16 9 C 0.02 0.25 6.33 -2.18 -0.01 0.24 16 10 N -0.50 -5.96 5.65 -231.41 -1.31 -7.27 16 11 C 0.10 1.19 5.75 -4.97 -0.03 1.16 16 12 C -0.21 -3.32 3.84 -104.57 -0.40 -3.72 16 13 C -0.07 -1.08 8.03 -39.61 -0.32 -1.40 16 14 C -0.19 -3.79 9.99 -39.40 -0.39 -4.19 16 15 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.21 -5.72 8.59 0.04 0.00 -5.72 16 17 C -0.39 -11.14 9.95 30.89 0.31 -10.83 16 18 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 19 C 0.07 1.85 5.49 -17.51 -0.10 1.75 16 20 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 21 Si 0.90 22.03 28.62 -169.99 -4.86 17.16 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 25 C -0.22 -4.69 9.17 -39.40 -0.36 -5.05 16 26 C -0.06 -1.03 7.48 -39.61 -0.30 -1.33 16 27 C 0.03 0.32 5.52 -2.18 -0.01 0.31 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.40 2.54 8.32 -40.82 -0.34 2.20 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.66 7.63 -51.93 -0.40 0.27 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.73 5.25 -51.93 -0.27 0.46 16 38 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 40 H 0.11 1.49 7.53 -52.49 -0.39 1.10 16 41 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.28 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 44 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.08 1.12 4.48 -51.93 -0.23 0.89 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -32.92 369.29 -8.95 -41.87 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.84 Total: 5.98 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.05 Total: -15.50 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.85 Total: -39.66 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.10 Total: -15.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.92 -8.95 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.558 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds