Wall clock time and date at job start Tue Mar 31 2020 12:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21286 * 119.99887 * 2 1 4 4 N 1.34777 * 120.00242 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00106 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47221 * 180.02562 * 5 4 2 7 7 H 1.08999 * 110.28243 * 304.32457 * 6 5 4 8 8 C 1.54256 * 110.32441 * 66.45324 * 6 5 4 9 9 C 1.54379 * 105.05791 * 118.89910 * 8 6 5 10 10 N 1.48557 * 104.59797 * 23.85268 * 9 8 6 11 11 C 1.46897 * 111.00314 * 200.96188 * 10 9 8 12 12 C 1.50706 * 109.47236 * 69.87015 * 11 10 9 13 13 C 1.38300 * 119.93212 * 269.73110 * 12 11 10 14 14 C 1.38097 * 120.06850 * 179.72687 * 13 12 11 15 15 C 1.38879 * 119.92736 * 0.56332 * 14 13 12 16 16 O 1.35755 * 120.06763 * 179.68235 * 15 14 13 17 17 C 1.34829 * 116.99808 * 174.48949 * 16 15 14 18 18 H 1.07999 * 120.00369 * 5.05971 * 17 16 15 19 19 C 1.38656 * 119.99679 * 185.05882 * 17 16 15 20 20 N 1.31559 * 119.99877 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00297 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47011 * 89.99857 * 21 19 17 23 23 H 1.48492 * 109.47187 * 210.00059 * 21 19 17 24 24 H 1.48498 * 109.46582 * 329.99912 * 21 19 17 25 25 C 1.38883 * 119.86665 * 359.70882 * 15 14 13 26 26 C 1.38094 * 119.92617 * 359.97438 * 25 15 14 27 27 C 1.48564 * 104.22038 * 320.51849 * 10 9 8 28 28 H 1.08996 * 109.46758 * 239.99253 * 1 2 3 29 29 H 1.08996 * 109.46914 * 119.99618 * 1 2 3 30 30 H 1.08997 * 109.46943 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99775 * 0.02562 * 4 2 1 32 32 H 1.08996 * 109.47507 * 299.99991 * 5 4 2 33 33 H 1.09005 * 109.46843 * 59.99810 * 5 4 2 34 34 H 1.09003 * 110.32269 * 237.79449 * 8 6 5 35 35 H 1.08994 * 110.32467 * 359.90235 * 8 6 5 36 36 H 1.08995 * 110.41212 * 142.63489 * 9 8 6 37 37 H 1.09004 * 110.40945 * 265.07327 * 9 8 6 38 38 H 1.08997 * 109.47789 * 189.87679 * 11 10 9 39 39 H 1.09005 * 109.47126 * 309.87342 * 11 10 9 40 40 H 1.07998 * 119.96372 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.03725 * 180.27024 * 14 13 12 42 42 H 0.96995 * 120.00059 * 180.02562 * 20 19 17 43 43 H 1.07993 * 120.03650 * 179.97438 * 25 15 14 44 44 H 1.08007 * 119.96679 * 179.97438 * 26 25 15 45 45 H 1.09000 * 110.40814 * 280.70167 * 27 10 9 46 46 H 1.09001 * 110.40817 * 158.26184 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0023 7 1 3.7387 -3.1586 0.8419 8 6 3.7892 -3.3065 -1.3287 9 6 5.1413 -3.6923 -1.9662 10 7 6.0856 -3.7715 -0.8222 11 6 7.4760 -3.6375 -1.2769 12 6 7.7194 -2.2238 -1.7389 13 6 7.5026 -1.8830 -3.0616 14 6 7.7193 -0.5871 -3.4866 15 6 8.1667 0.3716 -2.5869 16 8 8.3868 1.6449 -3.0031 17 6 8.7097 2.5506 -2.0580 18 1 8.8631 2.2343 -1.0368 19 6 8.8449 3.8883 -2.3972 20 7 9.1604 4.7720 -1.4751 21 14 8.5790 4.4356 -4.1633 22 1 7.1498 4.7859 -4.3631 23 1 9.4240 5.6235 -4.4459 24 1 8.9518 3.3324 -5.0847 25 6 8.3889 0.0250 -1.2605 26 6 8.1640 -1.2711 -0.8402 27 6 5.6987 -2.6329 0.0501 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3633 -0.5138 -0.8900 30 1 -0.3633 1.0276 0.0005 31 1 1.6960 -2.0072 -0.0013 32 1 4.0089 -0.6531 -0.8910 33 1 4.0095 -0.6534 0.8889 34 1 3.1935 -4.1987 -1.1355 35 1 3.2444 -2.6215 -1.9782 36 1 5.0649 -4.6590 -2.4638 37 1 5.4617 -2.9252 -2.6712 38 1 8.1516 -3.8724 -0.4545 39 1 7.6561 -4.3256 -2.1029 40 1 7.1596 -2.6302 -3.7618 41 1 7.5457 -0.3205 -4.5187 42 1 9.2546 5.7078 -1.7122 43 1 8.7372 0.7681 -0.5586 44 1 8.3370 -1.5415 0.1911 45 1 6.1064 -1.7000 -0.3394 46 1 6.0420 -2.8021 1.0706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028361171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:08 Heat of formation + Delta-G solvation = -58.960144 kcal Electronic energy + Delta-G solvation = -26903.921616 eV Core-core repulsion = 23179.019281 eV Total energy + Delta-G solvation = -3724.902335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40240 -40.73523 -39.99680 -38.19906 -36.12724 -34.54876 -33.63204 -32.07811 -31.42039 -30.11831 -29.85614 -27.61927 -26.59910 -25.08032 -23.77935 -22.71935 -21.76214 -21.21021 -21.01448 -19.84373 -19.12399 -17.96166 -17.48062 -17.04066 -16.71860 -16.50245 -16.39114 -16.04132 -15.76367 -15.68432 -15.33570 -15.16351 -14.56186 -14.47176 -14.38024 -14.30454 -14.11426 -13.65274 -13.45007 -13.28742 -13.04582 -12.98429 -12.78751 -12.60112 -12.46457 -12.37627 -12.17722 -12.05020 -11.94392 -11.81074 -11.42907 -11.32840 -11.01404 -10.94580 -10.18192 -9.82981 -9.42501 -9.04468 -8.55500 -6.28375 0.48859 0.55146 1.25334 1.30420 1.46064 1.62112 2.22693 2.23615 2.68616 2.97411 3.08052 3.22373 3.68196 3.71467 3.84574 3.97106 3.98053 4.02670 4.12381 4.33031 4.38451 4.45459 4.49535 4.51151 4.52963 4.66947 4.70561 4.73350 4.74444 4.84615 4.90268 4.97568 5.02028 5.07016 5.15044 5.17219 5.22541 5.28316 5.32432 5.43424 5.50306 5.64220 5.72471 5.85286 5.94934 6.06985 6.17859 6.56690 6.78597 7.27938 7.52360 8.56382 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.004249 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.205260 B = 6588.787535 C = 8653.384137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.494 3.506 3 O -0.612 6.612 4 N -0.711 5.711 5 C 0.129 3.871 6 C -0.088 4.088 7 H 0.107 0.893 8 C -0.115 4.115 9 C 0.017 3.983 10 N -0.492 5.492 11 C 0.096 3.904 12 C -0.182 4.182 13 C -0.057 4.057 14 C -0.196 4.196 15 C 0.121 3.879 16 O -0.246 6.246 17 C -0.401 4.401 18 H 0.079 0.921 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.971 3.029 22 H -0.269 1.269 23 H -0.263 1.263 24 H -0.261 1.261 25 C -0.239 4.239 26 C -0.057 4.057 27 C 0.021 3.979 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.421 0.579 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.285 0.715 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.043 0.957 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 -22.888 0.899 28.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.283 3.717 3 O -0.494 6.494 4 N -0.365 5.365 5 C 0.004 3.996 6 C -0.107 4.107 7 H 0.125 0.875 8 C -0.153 4.153 9 C -0.111 4.111 10 N -0.214 5.214 11 C -0.032 4.032 12 C -0.184 4.184 13 C -0.075 4.075 14 C -0.215 4.215 15 C 0.072 3.928 16 O -0.153 6.153 17 C -0.477 4.477 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.793 3.207 22 H -0.195 1.195 23 H -0.187 1.187 24 H -0.185 1.185 25 C -0.259 4.259 26 C -0.075 4.075 27 C -0.108 4.108 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.170 0.830 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.061 0.939 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.679 -22.402 1.022 27.363 hybrid contribution 0.509 1.897 -0.534 2.036 sum -15.170 -20.504 0.489 25.511 Atomic orbital electron populations 1.21918 0.87393 1.05932 1.06834 1.21869 0.92747 0.82845 0.74246 1.90779 1.72578 1.33952 1.52061 1.45882 1.06620 1.09280 1.74694 1.21237 0.80684 0.97571 1.00086 1.22024 0.95177 0.93022 1.00525 0.87453 1.22388 0.97071 1.00975 0.94841 1.23335 0.92291 1.01845 0.93606 1.65863 1.02178 1.39112 1.14243 1.21241 0.90587 0.90075 1.01254 1.20419 1.06033 0.98282 0.93666 1.20968 0.96701 0.94125 0.95740 1.20528 1.08374 0.93283 0.99307 1.19710 0.94463 0.84821 0.93836 1.83509 1.79492 1.15896 1.36438 1.20689 1.48416 0.88039 0.90592 0.90382 1.25302 0.95607 0.94098 1.03852 1.69728 1.47804 1.03336 1.35428 0.85224 0.78879 0.78346 0.78300 1.19460 1.18713 1.18515 1.21268 1.10040 0.98671 0.95887 1.20917 0.95798 0.91143 0.99685 1.23319 0.94577 0.93976 0.98890 0.86395 0.86641 0.89950 0.74115 0.94909 0.93560 0.88293 0.91655 0.88296 0.94122 0.89293 0.88336 0.82968 0.85679 0.90510 0.87909 0.85079 0.93933 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.32 71.24 0.74 -1.20 16 2 C 0.49 11.84 7.94 87.66 0.70 12.53 16 3 O -0.61 -23.57 17.09 -3.05 -0.05 -23.62 16 4 N -0.71 -13.01 5.32 -463.06 -2.46 -15.47 16 5 C 0.13 3.14 4.76 86.38 0.41 3.56 16 6 C -0.09 -1.53 3.13 -9.90 -0.03 -1.57 16 7 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 8 C -0.11 -1.66 6.33 31.49 0.20 -1.46 16 9 C 0.02 0.29 6.33 86.45 0.55 0.84 16 10 N -0.49 -9.55 5.65 -886.04 -5.01 -14.55 16 11 C 0.10 1.97 5.75 85.56 0.49 2.47 16 12 C -0.18 -5.18 3.84 -19.83 -0.08 -5.25 16 13 C -0.06 -1.70 8.03 22.25 0.18 -1.52 16 14 C -0.20 -7.61 9.99 22.39 0.22 -7.39 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.25 -13.96 8.59 -22.79 -0.20 -14.16 16 17 C -0.40 -24.76 9.95 67.92 0.68 -24.08 16 18 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 19 C 0.01 0.60 5.49 84.83 0.47 1.06 16 20 N -0.92 -57.33 13.96 21.61 0.30 -57.02 16 21 Si 0.97 47.47 28.62 68.60 1.96 49.43 16 22 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 25 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16 26 C -0.06 -1.96 7.48 22.25 0.17 -1.79 16 27 C 0.02 0.46 5.52 86.45 0.48 0.94 16 28 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 31 H 0.42 3.89 8.32 -92.71 -0.77 3.11 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.03 7.63 -2.39 -0.02 1.02 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 0.85 5.25 -2.38 -0.01 0.84 16 38 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.10 1.66 8.03 -2.38 -0.02 1.65 16 40 H 0.15 3.36 7.53 -2.91 -0.02 3.34 16 41 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.29 16.23 8.31 -92.71 -0.77 15.46 16 43 H 0.10 5.23 5.64 -2.91 -0.02 5.21 16 44 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.04 1.24 4.48 -2.39 -0.01 1.23 16 46 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -81.15 369.29 0.29 -80.87 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.22 Total: 22.04 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 5.52 Total: -27.51 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -7.17 Total: -87.05 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.25 Total: -37.78 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.96 Total: 49.43 kcal Total: -81.15 0.29 -80.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028361171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.906 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds