Wall clock time and date at job start Tue Mar 31 2020 12:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47598 * 2 1 4 4 C 1.35911 * 116.99978 * 180.02562 * 3 2 1 5 5 C 1.38843 * 119.98813 * 359.97438 * 4 3 2 6 6 C 1.38243 * 120.24105 * 180.02562 * 5 4 3 7 7 C 1.38000 * 120.20718 * 359.97438 * 6 5 4 8 8 C 1.39571 * 119.96281 * 359.97438 * 7 6 5 9 9 C 1.47861 * 120.11421 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99745 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00262 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00122 * 180.02562 * 11 9 8 13 13 C 1.53000 * 110.78328 * 56.75907 * 12 11 9 14 14 C 1.55158 * 110.72102 * 180.02562 * 12 11 9 15 15 C 1.54909 * 101.61642 * 82.87626 * 14 12 11 16 16 N 1.47423 * 104.83351 * 36.99324 * 15 14 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 14 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47317 * 90.00005 * 21 19 17 23 23 H 1.48493 * 109.47218 * 210.00105 * 21 19 17 24 24 H 1.48503 * 109.47133 * 329.99859 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 14 26 26 C 1.38454 * 119.97975 * 180.23227 * 4 3 2 27 27 H 1.08999 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46841 * 300.00346 * 1 2 3 29 29 H 1.08998 * 109.46816 * 59.99542 * 1 2 3 30 30 H 1.08999 * 109.46841 * 239.99653 * 2 1 3 31 31 H 1.08998 * 109.46816 * 120.00458 * 2 1 3 32 32 H 1.08010 * 119.87800 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.89517 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.02153 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99903 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47041 * 183.24556 * 13 12 11 37 37 H 1.09005 * 109.47043 * 303.24051 * 13 12 11 38 38 H 1.08994 * 109.46599 * 63.24007 * 13 12 11 39 39 H 1.09002 * 111.00366 * 324.78145 * 14 12 11 40 40 H 1.09002 * 111.00429 * 200.97207 * 14 12 11 41 41 H 1.09000 * 110.36449 * 155.82966 * 15 14 12 42 42 H 1.09002 * 110.36898 * 278.14897 * 15 14 12 43 43 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 45 45 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 46 46 H 1.08004 * 120.10827 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3539 1.5252 -0.0005 5 6 4.1993 0.4238 -0.0005 6 6 5.5706 0.5988 -0.0005 7 6 6.1084 1.8697 -0.0011 8 6 5.2665 2.9829 -0.0022 9 6 5.8391 4.3461 -0.0034 10 8 5.1039 5.3140 -0.0039 11 7 7.1762 4.5154 -0.0029 12 6 7.7435 5.8661 -0.0035 13 6 7.2303 6.6711 1.1922 14 6 9.2941 5.8103 -0.0034 15 6 9.5991 5.6103 -1.5089 16 7 8.5888 6.4235 -2.2100 17 6 8.7140 6.9366 -3.4734 18 1 7.9131 7.5221 -3.9002 19 6 9.8702 6.7042 -4.2055 20 7 10.8461 5.9903 -3.6856 21 14 10.0412 7.4048 -5.9287 22 1 10.6559 8.7546 -5.8556 23 1 10.9038 6.5115 -6.7429 24 1 8.6996 7.5052 -6.5576 25 6 7.4244 6.5915 -1.3284 26 6 3.8827 2.8047 0.0043 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7841 -0.5732 0.0003 33 1 6.2231 -0.2618 -0.0001 34 1 7.1802 2.0029 -0.0015 35 1 7.7629 3.7430 -0.0014 36 1 7.6192 7.6880 1.1394 37 1 6.1407 6.6973 1.1718 38 1 7.5652 6.2014 2.1169 39 1 9.6546 4.9657 0.5839 40 1 9.7187 6.7460 0.3604 41 1 10.6022 5.9667 -1.7433 42 1 9.4958 4.5598 -1.7807 43 1 11.6541 5.8282 -4.1970 44 1 7.2532 7.6510 -1.1381 45 1 6.5418 6.1509 -1.7920 46 1 3.2262 3.6623 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046664309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:37 Heat of formation + Delta-G solvation = -18.111874 kcal Electronic energy + Delta-G solvation = -26715.074214 eV Core-core repulsion = 22991.943193 eV Total energy + Delta-G solvation = -3723.131021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58351 -39.69921 -37.80561 -36.85455 -34.03148 -32.43352 -32.04925 -31.08437 -30.06053 -29.30246 -28.63128 -25.66055 -24.87499 -23.70250 -22.82757 -22.55647 -20.61748 -20.26512 -19.04442 -18.64879 -16.97148 -16.59182 -16.39814 -16.19234 -15.83062 -15.36709 -14.69038 -14.66245 -14.38798 -13.77754 -13.71968 -13.56728 -13.54490 -13.12432 -12.90643 -12.76382 -12.33435 -12.26570 -12.16953 -11.93637 -11.79830 -11.69610 -11.52929 -11.10538 -11.04267 -10.91963 -10.83415 -10.39556 -10.31592 -10.07133 -9.95142 -9.64311 -9.29820 -9.15136 -8.64993 -8.59483 -8.41622 -6.78794 -5.62966 -3.03063 0.75905 1.26166 2.84502 2.97901 3.42483 3.47216 3.48021 3.50027 3.85754 4.50425 4.52197 4.56116 4.60565 4.74493 4.84142 4.91054 4.98093 5.11858 5.20493 5.30449 5.40709 5.42511 5.44583 5.52596 5.59914 5.67629 5.76407 5.78211 6.02722 6.09579 6.18861 6.19309 6.23781 6.25130 6.38274 6.45218 6.48234 6.55871 6.74032 6.85846 7.15616 7.18629 7.46563 7.65987 7.81078 7.88123 8.37426 8.50698 9.25708 9.86348 10.51231 11.41533 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.002949 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.540559 B = 9491.108983 C =10086.491043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.120 3.880 5 C -0.190 4.190 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.087 4.087 9 C 0.558 3.442 10 O -0.531 6.531 11 N -0.700 5.700 12 C 0.160 3.840 13 C -0.153 4.153 14 C -0.147 4.147 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.216 4.216 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.925 5.925 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.137 3.863 26 C -0.094 4.094 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.397 0.603 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -14.323 12.010 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.075 3.925 5 C -0.209 4.209 6 C -0.105 4.105 7 C -0.142 4.142 8 C -0.090 4.090 9 C 0.345 3.655 10 O -0.409 6.409 11 N -0.351 5.351 12 C 0.074 3.926 13 C -0.211 4.211 14 C -0.186 4.186 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.345 4.345 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.010 3.990 26 C -0.114 4.114 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.245 -13.457 11.818 22.276 hybrid contribution 0.502 -0.487 -1.007 1.226 sum -12.744 -13.945 10.811 21.765 Atomic orbital electron populations 1.21778 0.92677 1.02815 1.03706 1.22791 0.95982 0.81998 1.01359 1.86100 1.18757 1.29233 1.88760 1.18803 0.82491 0.93762 0.97435 1.21382 0.94460 0.98027 1.07032 1.20867 0.94282 0.97203 0.98134 1.21276 0.99831 0.91965 1.01099 1.19843 0.93243 0.93576 1.02323 1.18075 0.82529 0.88181 0.76754 1.90725 1.59653 1.40972 1.49544 1.45900 1.05982 1.09216 1.73975 1.21382 0.94103 0.81184 0.95946 1.22076 1.03423 0.99487 0.96110 1.23368 0.92089 1.01585 1.01537 1.21943 0.97244 0.93638 0.84433 1.44500 1.13954 1.60719 1.13810 1.19104 1.00732 1.25573 0.89061 0.90537 1.24756 0.96683 1.00576 0.98824 1.69770 1.07211 1.43989 1.36494 0.86066 0.77443 0.78203 0.83795 1.21615 1.21720 1.20772 1.21622 0.91501 0.96858 0.89021 1.20469 0.94139 0.95459 1.01287 0.90385 0.91457 0.91385 0.91975 0.92043 0.85293 0.85124 0.85244 0.76713 0.91715 0.90435 0.93168 0.91893 0.90423 0.87392 0.97204 0.93833 0.95096 0.95098 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.40 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.60 10.13 -19.46 -0.20 -3.80 16 4 C 0.12 1.47 6.68 -39.28 -0.26 1.21 16 5 C -0.19 -1.92 9.03 -39.36 -0.36 -2.27 16 6 C -0.09 -0.87 10.03 -39.67 -0.40 -1.27 16 7 C -0.12 -1.45 9.54 -39.17 -0.37 -1.83 16 8 C -0.09 -1.25 5.87 -104.98 -0.62 -1.87 16 9 C 0.56 9.57 7.00 -12.32 -0.09 9.49 16 10 O -0.53 -10.60 13.32 5.32 0.07 -10.53 16 11 N -0.70 -11.49 5.10 -46.81 -0.24 -11.73 16 12 C 0.16 2.91 0.81 -129.95 -0.11 2.81 16 13 C -0.15 -2.48 8.44 37.16 0.31 -2.16 16 14 C -0.15 -2.68 6.07 -24.58 -0.15 -2.83 16 15 C 0.15 3.62 5.87 -2.53 -0.01 3.60 16 16 N -0.60 -15.82 3.39 -170.04 -0.58 -16.40 16 17 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 20 N -0.93 -26.94 10.09 55.49 0.56 -26.38 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.14 3.11 6.19 -3.04 -0.02 3.10 16 26 C -0.09 -1.34 9.53 -39.02 -0.37 -1.71 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.13 0.95 6.28 -52.48 -0.33 0.62 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.32 6.40 -52.49 -0.34 0.98 16 35 H 0.40 5.62 6.52 -40.82 -0.27 5.35 16 36 H 0.06 1.01 8.06 -51.93 -0.42 0.59 16 37 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 41 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.71 7.76 -51.93 -0.40 0.31 16 45 H 0.03 0.77 6.91 -51.93 -0.36 0.41 16 46 H 0.14 2.14 7.65 -52.48 -0.40 1.74 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -33.21 367.23 -8.82 -42.03 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.84 Total: 4.29 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.10 Total: -0.48 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.26 Total: -54.51 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.13 Total: -14.33 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.21 -8.82 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046664309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.916 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds