Wall clock time and date at job start Tue Mar 31 2020 12:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47598 * 2 1 4 4 C 1.35911 * 116.99978 * 180.02562 * 3 2 1 5 5 C 1.38843 * 119.98813 * 359.97438 * 4 3 2 6 6 C 1.38243 * 120.24105 * 180.02562 * 5 4 3 7 7 C 1.38000 * 120.20718 * 359.97438 * 6 5 4 8 8 C 1.39571 * 119.96281 * 359.97438 * 7 6 5 9 9 C 1.47861 * 120.11421 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99745 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00262 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00122 * 180.02562 * 11 9 8 13 13 C 1.53000 * 110.78328 * 56.75907 * 12 11 9 14 14 C 1.55158 * 110.72102 * 180.02562 * 12 11 9 15 15 C 1.54909 * 101.61642 * 82.87626 * 14 12 11 16 16 N 1.47423 * 104.83351 * 36.99324 * 15 14 12 17 17 C 1.36936 * 125.64594 * 155.90840 * 16 15 14 18 18 H 1.08007 * 120.00033 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00281 * 359.97114 * 17 16 15 20 20 N 1.31616 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47317 * 90.00005 * 21 19 17 23 23 H 1.48493 * 109.47218 * 210.00105 * 21 19 17 24 24 H 1.48503 * 109.47133 * 329.99859 * 21 19 17 25 25 C 1.47016 * 108.70440 * 335.86643 * 16 15 14 26 26 C 1.38454 * 119.97975 * 180.23227 * 4 3 2 27 27 H 1.08999 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46841 * 300.00346 * 1 2 3 29 29 H 1.08998 * 109.46816 * 59.99542 * 1 2 3 30 30 H 1.08999 * 109.46841 * 239.99653 * 2 1 3 31 31 H 1.08998 * 109.46816 * 120.00458 * 2 1 3 32 32 H 1.08010 * 119.87800 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.89517 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.02153 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99903 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47041 * 183.24556 * 13 12 11 37 37 H 1.09005 * 109.47043 * 303.24051 * 13 12 11 38 38 H 1.08994 * 109.46599 * 63.24007 * 13 12 11 39 39 H 1.09002 * 111.00366 * 324.78145 * 14 12 11 40 40 H 1.09002 * 111.00429 * 200.97207 * 14 12 11 41 41 H 1.09000 * 110.36449 * 155.82966 * 15 14 12 42 42 H 1.09002 * 110.36898 * 278.14897 * 15 14 12 43 43 H 0.96996 * 120.00056 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.88531 * 120.47268 * 25 16 15 45 45 H 1.08996 * 109.88671 * 241.49081 * 25 16 15 46 46 H 1.08004 * 120.10827 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3539 1.5252 -0.0005 5 6 4.1993 0.4238 -0.0005 6 6 5.5706 0.5988 -0.0005 7 6 6.1084 1.8697 -0.0011 8 6 5.2665 2.9829 -0.0022 9 6 5.8391 4.3461 -0.0034 10 8 5.1039 5.3140 -0.0039 11 7 7.1762 4.5154 -0.0029 12 6 7.7435 5.8661 -0.0035 13 6 7.2303 6.6711 1.1922 14 6 9.2941 5.8103 -0.0034 15 6 9.5991 5.6103 -1.5089 16 7 8.5888 6.4235 -2.2100 17 6 8.7140 6.9366 -3.4734 18 1 7.9131 7.5221 -3.9002 19 6 9.8702 6.7042 -4.2055 20 7 10.8461 5.9903 -3.6856 21 14 10.0412 7.4048 -5.9287 22 1 10.6559 8.7546 -5.8556 23 1 10.9038 6.5115 -6.7429 24 1 8.6996 7.5052 -6.5576 25 6 7.4244 6.5915 -1.3284 26 6 3.8827 2.8047 0.0043 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7841 -0.5732 0.0003 33 1 6.2231 -0.2618 -0.0001 34 1 7.1802 2.0029 -0.0015 35 1 7.7629 3.7430 -0.0014 36 1 7.6192 7.6880 1.1394 37 1 6.1407 6.6973 1.1718 38 1 7.5652 6.2014 2.1169 39 1 9.6546 4.9657 0.5839 40 1 9.7187 6.7460 0.3604 41 1 10.6022 5.9667 -1.7433 42 1 9.4958 4.5598 -1.7807 43 1 11.6541 5.8282 -4.1970 44 1 7.2532 7.6510 -1.1381 45 1 6.5418 6.1509 -1.7920 46 1 3.2262 3.6623 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046664309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:36 Heat of formation + Delta-G solvation = -39.379025 kcal Electronic energy + Delta-G solvation = -26715.996427 eV Core-core repulsion = 22991.943193 eV Total energy + Delta-G solvation = -3724.053234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69593 -40.83335 -39.12958 -38.05023 -35.78214 -33.85413 -32.90535 -32.38750 -31.42179 -30.47342 -30.17035 -27.56002 -25.90912 -25.25752 -23.80056 -23.43981 -22.25898 -21.61085 -20.49580 -19.73340 -18.88429 -17.66860 -17.31553 -17.07191 -16.99236 -16.79653 -16.43035 -16.05173 -15.63746 -15.57934 -14.78259 -14.68573 -14.44971 -14.37442 -14.20688 -14.06062 -13.62164 -13.41231 -13.32212 -13.19698 -13.01934 -12.90139 -12.80059 -12.78502 -12.59702 -12.08362 -12.05602 -11.99114 -11.89887 -11.70919 -11.65863 -11.56172 -10.76801 -10.73270 -10.19924 -9.97483 -9.29933 -8.89512 -7.79524 -5.22967 -0.23226 0.36708 1.44785 1.46408 1.55238 1.81716 1.95598 2.36063 2.47956 2.81882 3.29580 3.52408 3.69805 3.71977 3.77170 4.00365 4.01584 4.07119 4.11887 4.14763 4.17988 4.31832 4.37650 4.48079 4.62622 4.66830 4.78036 4.79202 4.84335 4.89426 4.91906 4.94351 5.00792 5.08521 5.14838 5.23920 5.28146 5.32971 5.36688 5.41910 5.58407 5.62647 5.68007 5.79910 6.30664 6.39892 6.56388 7.10531 7.20739 7.76028 8.39764 9.21910 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.002949 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.540559 B = 9491.108983 C =10086.491043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.336 6.336 4 C 0.114 3.886 5 C -0.178 4.178 6 C -0.078 4.078 7 C -0.124 4.124 8 C -0.108 4.108 9 C 0.554 3.446 10 O -0.569 6.569 11 N -0.694 5.694 12 C 0.170 3.830 13 C -0.144 4.144 14 C -0.127 4.127 15 C 0.154 3.846 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.068 0.932 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.979 3.021 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.136 3.864 26 C -0.120 4.120 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.078 0.922 42 H -0.005 1.005 43 H 0.249 0.751 44 H 0.023 0.977 45 H 0.003 0.997 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -16.974 12.999 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.251 6.251 4 C 0.069 3.931 5 C -0.196 4.196 6 C -0.096 4.096 7 C -0.143 4.143 8 C -0.111 4.111 9 C 0.343 3.657 10 O -0.450 6.450 11 N -0.346 5.346 12 C 0.083 3.917 13 C -0.202 4.202 14 C -0.165 4.165 15 C 0.030 3.970 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.086 0.914 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.807 3.193 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.009 3.991 26 C -0.140 4.140 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.021 0.979 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.802 -16.134 12.828 24.265 hybrid contribution 0.275 0.256 -1.349 1.400 sum -12.527 -15.878 11.480 23.256 Atomic orbital electron populations 1.21825 0.91799 1.04270 1.02975 1.23148 0.96796 0.80395 1.02793 1.86091 1.18431 1.31926 1.88669 1.18863 0.83318 0.93567 0.97367 1.21789 0.94371 0.98758 1.04693 1.21317 0.94747 0.97471 0.96055 1.21518 1.00354 0.91940 1.00478 1.19667 0.93631 0.92803 1.04978 1.18567 0.82407 0.89095 0.75665 1.90698 1.60493 1.42533 1.51277 1.45788 1.06088 1.08936 1.73744 1.21206 0.94317 0.82009 0.94133 1.21998 1.02282 0.99751 0.96192 1.23225 0.91727 1.03752 0.97841 1.21786 0.95209 0.92095 0.87934 1.44775 1.15553 1.60798 1.13737 1.19361 1.00949 1.26240 0.90719 0.91407 1.25540 0.96319 1.01010 1.02405 1.69996 1.07279 1.44455 1.37486 0.85083 0.77363 0.77564 0.79326 1.20919 1.21415 1.20361 1.21695 0.89590 0.96886 0.90895 1.20403 0.94095 0.96054 1.03423 0.87777 0.92011 0.92338 0.90692 0.90223 0.81872 0.81315 0.83638 0.75229 0.91163 0.92119 0.90252 0.87820 0.89610 0.90386 0.98722 0.94083 0.95915 0.97937 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.80 16 2 C 0.04 0.55 5.46 71.98 0.39 0.94 16 3 O -0.34 -7.54 10.13 -92.54 -0.94 -8.48 16 4 C 0.11 2.71 6.68 22.47 0.15 2.86 16 5 C -0.18 -3.02 9.03 22.42 0.20 -2.82 16 6 C -0.08 -1.28 10.03 22.21 0.22 -1.06 16 7 C -0.12 -2.69 9.54 22.54 0.21 -2.47 16 8 C -0.11 -3.14 5.87 -20.10 -0.12 -3.26 16 9 C 0.55 19.53 7.00 86.79 0.61 20.13 16 10 O -0.57 -24.04 13.32 -3.86 -0.05 -24.09 16 11 N -0.69 -22.49 5.10 -420.29 -2.14 -24.63 16 12 C 0.17 6.13 0.81 4.81 0.00 6.13 16 13 C -0.14 -4.53 8.44 71.98 0.61 -3.92 16 14 C -0.13 -4.41 6.07 31.99 0.19 -4.22 16 15 C 0.15 7.39 5.87 86.86 0.51 7.90 16 16 N -0.62 -33.56 3.39 -691.89 -2.35 -35.91 16 17 C -0.24 -14.39 10.27 84.03 0.86 -13.53 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 20 N -0.94 -55.63 10.09 21.65 0.22 -55.42 16 21 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 C 0.14 6.41 6.19 86.75 0.54 6.94 16 26 C -0.12 -3.55 9.53 22.63 0.22 -3.33 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.08 0.72 7.66 -2.39 -0.02 0.71 16 32 H 0.16 1.62 6.28 -2.91 -0.02 1.60 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 2.58 6.40 -2.91 -0.02 2.56 16 35 H 0.41 10.96 6.52 -92.71 -0.60 10.35 16 36 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 37 H 0.06 2.15 5.97 -2.38 -0.01 2.14 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 2.80 8.07 -2.39 -0.02 2.78 16 40 H 0.09 2.89 8.05 -2.39 -0.02 2.87 16 41 H 0.08 4.24 5.88 -2.39 -0.01 4.23 16 42 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.02 1.10 7.76 -2.39 -0.02 1.08 16 45 H 0.00 0.14 6.91 -2.39 -0.02 0.12 16 46 H 0.12 3.96 7.65 -2.91 -0.02 3.94 16 Total: -1.00 -76.11 367.23 2.96 -73.15 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.39 Total: 20.08 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.81 Total: 6.50 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.27 Total: -115.95 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.99 Total: -32.57 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -76.11 2.96 -73.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046664309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.773 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds