Wall clock time and date at job start Tue Mar 31 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47498 * 2 1 4 4 C 1.35706 * 117.00152 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.91372 * 180.02562 * 4 3 2 6 6 C 1.37696 * 120.08835 * 179.72482 * 5 4 3 7 7 C 1.39736 * 119.91418 * 0.25135 * 6 5 4 8 8 C 1.47599 * 120.09092 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00106 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.52995 * 110.64240 * 300.70315 * 11 10 8 13 13 C 1.55157 * 110.71535 * 177.55920 * 11 10 8 14 14 C 1.55383 * 101.36734 * 277.04399 * 13 11 10 15 15 N 1.47423 * 104.87528 * 323.02089 * 14 13 11 16 16 C 1.36942 * 125.64874 * 204.09816 * 15 14 13 17 17 H 1.07996 * 120.00314 * 169.97917 * 16 15 14 18 18 C 1.38814 * 119.99762 * 349.97846 * 16 15 14 19 19 N 1.31616 * 120.00150 * 350.42283 * 18 16 15 20 20 Si 1.86804 * 120.00002 * 170.42409 * 18 16 15 21 21 H 1.48506 * 109.47099 * 94.13820 * 20 18 16 22 22 H 1.48496 * 109.47380 * 214.14059 * 20 18 16 23 23 H 1.48501 * 109.46777 * 334.14029 * 20 18 16 24 24 C 1.47014 * 108.70524 * 24.12887 * 15 14 13 25 25 C 1.39732 * 119.82268 * 0.02562 * 7 6 5 26 26 C 1.37705 * 119.91257 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47436 * 59.99519 * 1 2 3 28 28 H 1.08993 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46792 * 299.99830 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00170 * 2 1 3 31 31 H 1.08997 * 109.47436 * 120.00481 * 2 1 3 32 32 H 1.07999 * 119.95610 * 359.97438 * 5 4 3 33 33 H 1.08006 * 120.04709 * 180.23108 * 6 5 4 34 34 H 0.96991 * 120.00241 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47359 * 59.30564 * 12 11 10 36 36 H 1.09008 * 109.47006 * 179.29920 * 12 11 10 37 37 H 1.09000 * 109.47404 * 299.29277 * 12 11 10 38 38 H 1.09003 * 111.00713 * 35.21665 * 13 11 10 39 39 H 1.09003 * 111.00426 * 159.06803 * 13 11 10 40 40 H 1.09004 * 110.34790 * 204.16483 * 14 13 11 41 41 H 1.09000 * 110.35192 * 81.87542 * 14 13 11 42 42 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88930 * 239.52512 * 24 15 14 44 44 H 1.09000 * 109.88260 * 118.35620 * 24 15 14 45 45 H 1.08004 * 120.04750 * 180.02562 * 25 7 6 46 46 H 1.07997 * 119.95550 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8812 2.8102 0.0000 6 6 5.2457 2.9947 0.0051 7 6 6.0986 1.8878 0.0046 8 6 7.5619 2.0811 0.0107 9 8 8.0266 3.2046 0.0157 10 7 8.3828 1.0122 0.0096 11 6 9.8352 1.2042 0.0151 12 6 10.2782 2.0039 -1.2116 13 6 10.5691 -0.1616 0.0745 14 6 10.5359 -0.4610 1.5988 15 7 10.7223 0.8502 2.2463 16 6 11.2166 1.0549 3.5068 17 1 11.4672 2.0534 3.8331 18 6 11.3956 -0.0212 4.3653 19 7 10.9192 -1.2054 4.0444 20 14 12.3127 0.2114 5.9760 21 1 11.3401 0.4856 7.0642 22 1 13.0761 -1.0221 6.2936 23 1 13.2509 1.3557 5.8506 24 6 10.2888 1.9018 1.3148 25 6 5.5625 0.5975 -0.0018 26 6 4.1968 0.4213 -0.0069 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2214 3.6652 0.0004 33 1 5.6563 3.9937 0.0093 34 1 8.0121 0.1160 0.0044 35 1 9.7839 2.9754 -1.2100 36 1 11.3586 2.1461 -1.1820 37 1 10.0081 1.4602 -2.1169 38 1 10.0267 -0.9214 -0.4882 39 1 11.5945 -0.0700 -0.2838 40 1 11.3471 -1.1368 1.8701 41 1 9.5740 -0.8897 1.8801 42 1 11.0446 -1.9575 4.6441 43 1 11.1193 2.5754 1.1035 44 1 9.4573 2.4592 1.7460 45 1 6.2183 -0.2606 -0.0018 46 1 3.7817 -0.5757 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046812067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:47 Heat of formation + Delta-G solvation = -21.822752 kcal Electronic energy + Delta-G solvation = -26705.759799 eV Core-core repulsion = 22982.467863 eV Total energy + Delta-G solvation = -3723.291937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57476 -39.71893 -37.82774 -36.74774 -34.00504 -32.55091 -31.85982 -31.04979 -30.34381 -29.24525 -28.60113 -25.67153 -24.53357 -23.81348 -23.30781 -22.03884 -20.66639 -20.29921 -18.99752 -18.60546 -17.57529 -16.69248 -16.44115 -16.17190 -15.36137 -15.03263 -14.65469 -14.62765 -14.18593 -13.91079 -13.74565 -13.65450 -13.59094 -13.11346 -12.98386 -12.76938 -12.40841 -12.31536 -12.14250 -11.98704 -11.86969 -11.67409 -11.56806 -11.03509 -10.97787 -10.93241 -10.78914 -10.39971 -10.35523 -10.07120 -9.98244 -9.66831 -9.30526 -9.21643 -8.64720 -8.54972 -8.33388 -6.74751 -5.72062 -3.02805 0.88543 1.20039 2.86666 3.01737 3.41867 3.46969 3.47957 3.50215 3.90933 4.47639 4.52949 4.54628 4.62770 4.72579 4.86941 4.87391 5.05541 5.17088 5.18978 5.29584 5.39903 5.40891 5.50296 5.53686 5.57976 5.64097 5.74986 5.80704 5.98888 6.03962 6.12053 6.18171 6.22511 6.30398 6.34500 6.45434 6.51290 6.55723 6.73848 6.88149 7.12641 7.18698 7.47656 7.55631 7.79377 7.89556 8.29057 8.57640 9.23436 9.85196 10.52986 11.41542 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.003078 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.099597 B = 9093.158349 C =10049.809068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.150 3.850 5 C -0.162 4.162 6 C -0.021 4.021 7 C -0.166 4.166 8 C 0.562 3.438 9 O -0.538 6.538 10 N -0.704 5.704 11 C 0.161 3.839 12 C -0.151 4.151 13 C -0.149 4.149 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.136 3.864 25 C -0.043 4.043 26 C -0.217 4.217 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.395 0.605 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.251 0.749 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.130 0.870 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.086 0.141 -12.905 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.104 3.896 5 C -0.181 4.181 6 C -0.039 4.039 7 C -0.169 4.169 8 C 0.350 3.650 9 O -0.416 6.416 10 N -0.355 5.355 11 C 0.075 3.925 12 C -0.209 4.209 13 C -0.188 4.188 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.009 3.991 25 C -0.061 4.061 26 C -0.236 4.236 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.148 0.852 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.828 0.952 -12.708 21.109 hybrid contribution 0.256 -0.794 1.015 1.314 sum -16.572 0.158 -11.693 20.283 Atomic orbital electron populations 1.21779 0.92644 1.02950 1.03556 1.22845 0.95960 0.81796 1.01747 1.86029 1.19093 1.29626 1.88045 1.19234 0.82199 0.94221 0.93976 1.20386 0.95024 0.94841 1.07854 1.21088 0.91397 0.99286 0.92172 1.19983 0.93690 0.93969 1.09296 1.18028 0.85793 0.84896 0.76299 1.90726 1.77180 1.23602 1.50120 1.45895 1.06509 1.08614 1.74448 1.21322 0.78415 0.96871 0.95845 1.22056 1.01470 1.01395 0.95999 1.23439 0.99767 0.94296 1.01341 1.21471 1.00254 0.88668 0.84656 1.44477 1.74685 1.00680 1.13064 1.19043 1.34169 0.93876 0.88055 0.90677 1.24791 1.01395 0.96065 0.98288 1.69940 1.49315 1.00219 1.37402 0.86131 0.79461 0.76917 0.83446 1.21702 1.21667 1.20609 1.21618 0.96884 0.91861 0.88695 1.21141 0.94640 0.96401 0.93959 1.21151 0.94034 0.98228 1.10190 0.91517 0.90277 0.91450 0.91801 0.91676 0.84658 0.83885 0.76939 0.90680 0.91789 0.93194 0.91777 0.90477 0.91189 0.95751 0.93853 0.95136 0.94804 0.85206 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.37 5.45 37.16 0.20 0.58 16 3 O -0.31 -3.28 10.12 -18.82 -0.19 -3.47 16 4 C 0.15 1.71 6.70 -39.02 -0.26 1.45 16 5 C -0.16 -1.89 9.97 -39.50 -0.39 -2.28 16 6 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 7 C -0.17 -2.38 5.87 -104.96 -0.62 -2.99 16 8 C 0.56 9.62 6.98 -12.44 -0.09 9.53 16 9 O -0.54 -10.66 13.29 5.29 0.07 -10.59 16 10 N -0.70 -11.56 5.10 -46.91 -0.24 -11.80 16 11 C 0.16 2.92 0.80 -129.98 -0.10 2.82 16 12 C -0.15 -2.40 8.41 37.15 0.31 -2.09 16 13 C -0.15 -2.68 6.11 -24.33 -0.15 -2.83 16 14 C 0.17 4.13 5.41 -2.27 -0.01 4.12 16 15 N -0.60 -15.78 3.40 -169.78 -0.58 -16.36 16 16 C -0.22 -6.41 10.24 -15.06 -0.15 -6.56 16 17 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 18 C -0.01 -0.27 5.40 -17.43 -0.09 -0.36 16 19 N -0.92 -27.04 10.68 55.49 0.59 -26.44 16 20 Si 0.91 22.47 29.56 -169.99 -5.03 17.44 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.14 3.09 6.16 -3.07 -0.02 3.07 16 25 C -0.04 -0.51 9.53 -39.22 -0.37 -0.89 16 26 C -0.22 -2.34 9.01 -39.49 -0.36 -2.70 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 7.64 -51.93 -0.40 0.00 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.14 1.84 7.64 -52.48 -0.40 1.44 16 34 H 0.40 5.60 6.50 -40.82 -0.27 5.33 16 35 H 0.07 1.30 6.20 -51.93 -0.32 0.98 16 36 H 0.06 0.97 8.12 -51.92 -0.42 0.55 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 39 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 40 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 41 H 0.02 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 44 H 0.03 0.85 6.68 -51.93 -0.35 0.50 16 45 H 0.13 1.34 6.40 -52.48 -0.34 1.01 16 46 H 0.13 1.10 6.28 -52.49 -0.33 0.77 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -33.49 368.19 -8.82 -42.31 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.90 Total: 3.59 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.10 Total: -0.23 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.22 Total: -54.60 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.12 Total: -14.06 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.49 -8.82 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.489 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds