Wall clock time and date at job start Tue Mar 31 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47498 * 2 1 4 4 C 1.35706 * 117.00152 * 180.02562 * 3 2 1 5 5 C 1.38997 * 119.91372 * 180.02562 * 4 3 2 6 6 C 1.37696 * 120.08835 * 179.72482 * 5 4 3 7 7 C 1.39736 * 119.91418 * 0.25135 * 6 5 4 8 8 C 1.47599 * 120.09092 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00106 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.52995 * 110.64240 * 300.70315 * 11 10 8 13 13 C 1.55157 * 110.71535 * 177.55920 * 11 10 8 14 14 C 1.55383 * 101.36734 * 277.04399 * 13 11 10 15 15 N 1.47423 * 104.87528 * 323.02089 * 14 13 11 16 16 C 1.36942 * 125.64874 * 204.09816 * 15 14 13 17 17 H 1.07996 * 120.00314 * 169.97917 * 16 15 14 18 18 C 1.38814 * 119.99762 * 349.97846 * 16 15 14 19 19 N 1.31616 * 120.00150 * 350.42283 * 18 16 15 20 20 Si 1.86804 * 120.00002 * 170.42409 * 18 16 15 21 21 H 1.48506 * 109.47099 * 94.13820 * 20 18 16 22 22 H 1.48496 * 109.47380 * 214.14059 * 20 18 16 23 23 H 1.48501 * 109.46777 * 334.14029 * 20 18 16 24 24 C 1.47014 * 108.70524 * 24.12887 * 15 14 13 25 25 C 1.39732 * 119.82268 * 0.02562 * 7 6 5 26 26 C 1.37705 * 119.91257 * 359.97438 * 25 7 6 27 27 H 1.08997 * 109.47436 * 59.99519 * 1 2 3 28 28 H 1.08993 * 109.47415 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46792 * 299.99830 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00170 * 2 1 3 31 31 H 1.08997 * 109.47436 * 120.00481 * 2 1 3 32 32 H 1.07999 * 119.95610 * 359.97438 * 5 4 3 33 33 H 1.08006 * 120.04709 * 180.23108 * 6 5 4 34 34 H 0.96991 * 120.00241 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47359 * 59.30564 * 12 11 10 36 36 H 1.09008 * 109.47006 * 179.29920 * 12 11 10 37 37 H 1.09000 * 109.47404 * 299.29277 * 12 11 10 38 38 H 1.09003 * 111.00713 * 35.21665 * 13 11 10 39 39 H 1.09003 * 111.00426 * 159.06803 * 13 11 10 40 40 H 1.09004 * 110.34790 * 204.16483 * 14 13 11 41 41 H 1.09000 * 110.35192 * 81.87542 * 14 13 11 42 42 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88930 * 239.52512 * 24 15 14 44 44 H 1.09000 * 109.88260 * 118.35620 * 24 15 14 45 45 H 1.08004 * 120.04750 * 180.02562 * 25 7 6 46 46 H 1.07997 * 119.95550 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8812 2.8102 0.0000 6 6 5.2457 2.9947 0.0051 7 6 6.0986 1.8878 0.0046 8 6 7.5619 2.0811 0.0107 9 8 8.0266 3.2046 0.0157 10 7 8.3828 1.0122 0.0096 11 6 9.8352 1.2042 0.0151 12 6 10.2782 2.0039 -1.2116 13 6 10.5691 -0.1616 0.0745 14 6 10.5359 -0.4610 1.5988 15 7 10.7223 0.8502 2.2463 16 6 11.2166 1.0549 3.5068 17 1 11.4672 2.0534 3.8331 18 6 11.3956 -0.0212 4.3653 19 7 10.9192 -1.2054 4.0444 20 14 12.3127 0.2114 5.9760 21 1 11.3401 0.4856 7.0642 22 1 13.0761 -1.0221 6.2936 23 1 13.2509 1.3557 5.8506 24 6 10.2888 1.9018 1.3148 25 6 5.5625 0.5975 -0.0018 26 6 4.1968 0.4213 -0.0069 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2214 3.6652 0.0004 33 1 5.6563 3.9937 0.0093 34 1 8.0121 0.1160 0.0044 35 1 9.7839 2.9754 -1.2100 36 1 11.3586 2.1461 -1.1820 37 1 10.0081 1.4602 -2.1169 38 1 10.0267 -0.9214 -0.4882 39 1 11.5945 -0.0700 -0.2838 40 1 11.3471 -1.1368 1.8701 41 1 9.5740 -0.8897 1.8801 42 1 11.0446 -1.9575 4.6441 43 1 11.1193 2.5754 1.1035 44 1 9.4573 2.4592 1.7460 45 1 6.2183 -0.2606 -0.0018 46 1 3.7817 -0.5757 -0.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046812067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:47 Heat of formation + Delta-G solvation = -43.085953 kcal Electronic energy + Delta-G solvation = -26706.681841 eV Core-core repulsion = 22982.467863 eV Total energy + Delta-G solvation = -3724.213978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65229 -40.85946 -39.13532 -37.96562 -35.74246 -33.88816 -32.91813 -32.03000 -31.80171 -30.55732 -30.09769 -27.56417 -25.63685 -25.05952 -24.48197 -22.92570 -22.31773 -21.65464 -20.44825 -19.53254 -18.99382 -18.41015 -17.32068 -17.09063 -16.79281 -16.58500 -16.09281 -16.02001 -15.62187 -15.29313 -14.98999 -14.64482 -14.40920 -14.33845 -14.20691 -14.04176 -13.70310 -13.57442 -13.29511 -13.18393 -13.13807 -12.93217 -12.81466 -12.72328 -12.64131 -12.16040 -12.01711 -11.94370 -11.78383 -11.74719 -11.65734 -11.59908 -10.73651 -10.67411 -10.13018 -10.05559 -9.28421 -8.85851 -7.90303 -5.23543 -0.12333 0.29303 1.44202 1.45066 1.55289 1.86478 2.13673 2.21214 2.48023 2.84123 3.28557 3.55554 3.67961 3.70514 3.82402 3.85775 4.00468 4.07421 4.11520 4.16763 4.20949 4.35510 4.39499 4.52394 4.61783 4.67416 4.80868 4.85228 4.86219 4.91265 4.92237 4.95868 5.02253 5.07674 5.09734 5.17890 5.27930 5.31792 5.38668 5.42583 5.58613 5.59947 5.67580 5.74123 6.19525 6.34149 6.62040 7.08305 7.28518 7.74552 8.41058 9.21305 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.003078 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.099597 B = 9093.158349 C =10049.809068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.152 3.848 5 C -0.167 4.167 6 C -0.029 4.029 7 C -0.191 4.191 8 C 0.559 3.441 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.171 3.829 12 C -0.142 4.142 13 C -0.129 4.129 14 C 0.179 3.821 15 N -0.622 5.622 16 C -0.248 4.248 17 H 0.068 0.932 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.976 3.024 21 H -0.288 1.288 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.135 3.865 25 C -0.041 4.041 26 C -0.214 4.214 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.038 0.962 41 H 0.004 0.996 42 H 0.250 0.750 43 H 0.025 0.975 44 H 0.004 0.996 45 H 0.147 0.853 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 -1.255 -14.048 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.105 3.895 5 C -0.185 4.185 6 C -0.048 4.048 7 C -0.194 4.194 8 C 0.348 3.652 9 O -0.455 6.455 10 N -0.351 5.351 11 C 0.084 3.916 12 C -0.200 4.200 13 C -0.167 4.167 14 C 0.054 3.946 15 N -0.348 5.348 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.251 4.251 19 N -0.590 5.590 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.009 3.991 25 C -0.060 4.060 26 C -0.232 4.232 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.245 0.755 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.022 0.978 45 H 0.164 0.836 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.025 -0.461 -13.874 22.751 hybrid contribution 0.485 -0.359 1.406 1.530 sum -17.540 -0.819 -12.467 21.535 Atomic orbital electron populations 1.21813 0.91412 1.04242 1.03243 1.23179 0.97019 0.80429 1.02785 1.86039 1.18320 1.31821 1.87585 1.19379 0.82951 0.94264 0.92860 1.20534 0.94509 0.95932 1.07549 1.21101 0.92131 0.98875 0.92721 1.19873 0.91990 0.95478 1.12093 1.18493 0.87042 0.84378 0.75288 1.90700 1.78045 1.24942 1.51814 1.45812 1.05780 1.09279 1.74257 1.21170 0.79497 0.96664 0.94251 1.21975 1.01730 1.00476 0.95808 1.23311 1.01210 0.94976 0.97204 1.21325 0.97779 0.87047 0.88445 1.44764 1.74580 1.02488 1.12968 1.19322 1.34861 0.93866 0.89710 0.91448 1.25577 1.02203 0.95820 1.01529 1.70113 1.49933 1.00640 1.38325 0.85123 0.78195 0.77032 0.79300 1.21502 1.21229 1.19813 1.21699 0.95577 0.91445 0.90428 1.21324 0.95580 0.95845 0.93205 1.21434 0.93341 0.99452 1.08993 0.91610 0.88175 0.92005 0.90324 0.90980 0.83150 0.84617 0.75520 0.92325 0.91028 0.90291 0.87737 0.89280 0.94322 0.97833 0.94105 0.95697 0.97797 0.83558 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.04 0.47 5.45 71.98 0.39 0.86 16 3 O -0.32 -6.08 10.12 -90.26 -0.91 -7.00 16 4 C 0.15 3.20 6.70 22.64 0.15 3.35 16 5 C -0.17 -3.74 9.97 22.32 0.22 -3.52 16 6 C -0.03 -0.78 9.58 22.50 0.22 -0.56 16 7 C -0.19 -5.43 5.87 -20.08 -0.12 -5.55 16 8 C 0.56 19.28 6.98 86.71 0.61 19.89 16 9 O -0.57 -23.54 13.29 -3.99 -0.05 -23.59 16 10 N -0.70 -22.45 5.10 -420.61 -2.14 -24.59 16 11 C 0.17 6.04 0.80 4.79 0.00 6.04 16 12 C -0.14 -4.28 8.41 71.98 0.61 -3.67 16 13 C -0.13 -4.36 6.11 32.15 0.20 -4.16 16 14 C 0.18 8.53 5.41 87.02 0.47 9.00 16 15 N -0.62 -33.38 3.40 -691.05 -2.35 -35.73 16 16 C -0.25 -14.67 10.24 84.03 0.86 -13.81 16 17 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 18 C -0.06 -3.33 5.40 84.86 0.46 -2.88 16 19 N -0.94 -56.19 10.68 21.65 0.23 -55.96 16 20 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.13 6.30 6.16 86.73 0.53 6.83 16 25 C -0.04 -0.92 9.53 22.50 0.21 -0.70 16 26 C -0.21 -4.09 9.01 22.33 0.20 -3.89 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.71 7.64 -2.39 -0.02 0.69 16 31 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 32 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.14 3.69 7.64 -2.91 -0.02 3.66 16 34 H 0.41 10.86 6.50 -92.71 -0.60 10.26 16 35 H 0.06 2.00 6.20 -2.39 -0.01 1.99 16 36 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.74 8.06 -2.39 -0.02 2.72 16 39 H 0.09 2.86 8.05 -2.39 -0.02 2.84 16 40 H 0.04 2.06 6.94 -2.39 -0.02 2.05 16 41 H 0.00 0.19 8.07 -2.39 -0.02 0.17 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.03 1.18 7.80 -2.39 -0.02 1.16 16 44 H 0.00 0.21 6.68 -2.39 -0.02 0.19 16 45 H 0.15 2.69 6.40 -2.91 -0.02 2.67 16 46 H 0.16 2.09 6.28 -2.91 -0.02 2.07 16 Total: -1.00 -74.97 368.19 2.94 -72.03 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.38 Total: 19.39 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.75 Total: 6.68 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.26 Total: -116.28 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.97 Total: -30.59 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.97 2.94 -72.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046812067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.941 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds