Wall clock time and date at job start Tue Mar 31 2020 12:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.46840 * 2 1 4 4 C 1.35654 * 116.99510 * 180.02562 * 3 2 1 5 5 C 1.38707 * 120.15300 * 0.22901 * 4 3 2 6 6 C 1.38054 * 120.08645 * 180.27922 * 5 4 3 7 7 C 1.38553 * 120.39050 * 359.74296 * 6 5 4 8 8 C 1.37786 * 120.29846 * 359.97438 * 7 6 5 9 9 C 1.39717 * 119.90806 * 0.02562 * 8 7 6 10 10 C 1.47534 * 120.18993 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99693 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00232 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00048 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.63660 * 34.30799 * 13 12 10 15 15 C 1.54324 * 110.72365 * 271.16056 * 13 12 10 16 16 N 1.47022 * 107.27020 * 219.44316 * 15 13 12 17 17 C 1.36931 * 125.64496 * 178.90473 * 16 15 13 18 18 H 1.08005 * 120.00166 * 174.87677 * 17 16 15 19 19 C 1.38809 * 120.00502 * 354.87648 * 17 16 15 20 20 N 1.31622 * 119.99778 * 7.06309 * 19 17 16 21 21 Si 1.86794 * 120.00419 * 187.06156 * 19 17 16 22 22 H 1.48501 * 109.47178 * 94.98880 * 21 19 17 23 23 H 1.48500 * 109.47342 * 214.98694 * 21 19 17 24 24 H 1.48504 * 109.47285 * 334.98842 * 21 19 17 25 25 C 1.47426 * 108.70284 * 358.94254 * 16 15 13 26 26 C 1.55121 * 104.94498 * 24.00510 * 25 16 15 27 27 H 1.08994 * 110.94010 * 81.21260 * 26 25 16 28 28 C 1.53002 * 111.15895 * 205.13472 * 26 25 16 29 29 H 1.08993 * 109.47373 * 60.00260 * 1 2 3 30 30 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47278 * 300.00141 * 1 2 3 32 32 H 1.09000 * 109.46820 * 239.99586 * 2 1 3 33 33 H 1.09001 * 109.46761 * 119.99737 * 2 1 3 34 34 H 1.08004 * 119.96099 * 0.04175 * 5 4 3 35 35 H 1.08003 * 119.80780 * 179.71777 * 6 5 4 36 36 H 1.07996 * 119.85562 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.05247 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99996 * 0.28165 * 12 10 9 39 39 H 1.08994 * 109.87947 * 338.86097 * 15 13 12 40 40 H 1.08997 * 109.87915 * 99.86961 * 15 13 12 41 41 H 0.97002 * 120.00193 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36288 * 142.97066 * 25 16 15 43 43 H 1.09004 * 110.36497 * 265.17788 * 25 16 15 44 44 H 1.09001 * 109.46844 * 172.16904 * 28 26 25 45 45 H 1.08997 * 109.46882 * 292.16103 * 28 26 25 46 46 H 1.08997 * 109.47472 * 52.16657 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5250 -0.0005 5 6 4.1990 0.4272 -0.0059 6 6 5.5674 0.6096 -0.0006 7 6 6.1043 1.8869 0.0047 8 6 5.2769 2.9887 0.0042 9 6 3.8902 2.8185 -0.0011 10 6 2.9985 3.9939 -0.0012 11 8 1.7922 3.8418 -0.0063 12 7 3.5210 5.2362 0.0045 13 6 2.6355 6.4034 0.0039 14 1 1.7296 6.1986 0.5744 15 6 2.2883 6.8247 -1.4395 16 7 2.2923 8.2944 -1.4781 17 6 2.0521 9.0642 -2.5848 18 1 1.9961 10.1390 -2.4932 19 6 1.8805 8.4635 -3.8243 20 7 1.8097 7.1524 -3.9161 21 14 1.7500 9.5157 -5.3622 22 1 3.0869 9.6307 -5.9983 23 1 0.8013 8.8848 -6.3147 24 1 1.2579 10.8683 -4.9964 25 6 2.5986 8.8019 -0.1283 26 6 3.3692 7.6492 0.5672 27 1 4.4190 7.6500 0.2742 28 6 3.2264 7.7284 2.0884 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5716 -0.0103 35 1 6.2234 -0.2484 -0.0001 36 1 7.1761 2.0196 0.0084 37 1 5.6997 3.9825 0.0087 38 1 4.4834 5.3576 0.0044 39 1 3.0358 6.4337 -2.1297 40 1 1.3019 6.4471 -1.7088 41 1 1.6894 6.7326 -4.7822 42 1 3.2229 9.6933 -0.1909 43 1 1.6780 9.0217 0.4123 44 1 3.6571 6.8351 2.5408 45 1 3.7498 8.6106 2.4570 46 1 2.1708 7.7959 2.3513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080876207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:22 Heat of formation + Delta-G solvation = -21.089496 kcal Electronic energy + Delta-G solvation = -27092.951594 eV Core-core repulsion = 23369.691454 eV Total energy + Delta-G solvation = -3723.260140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50286 -39.00409 -37.58238 -37.08695 -33.80840 -32.63062 -32.04333 -31.08627 -30.31948 -29.61240 -27.60832 -25.58461 -24.31952 -24.00466 -22.92210 -21.70082 -20.60022 -19.96786 -19.52256 -18.39446 -17.02521 -16.79304 -16.17701 -16.16325 -15.39738 -15.05180 -14.82481 -14.70098 -14.25441 -13.78282 -13.63585 -13.40228 -13.19104 -13.00110 -12.72233 -12.66434 -12.57473 -12.08346 -12.05995 -11.86366 -11.70502 -11.61770 -11.28157 -11.10697 -10.95119 -10.83433 -10.74985 -10.51544 -10.31666 -9.92173 -9.86560 -9.63413 -9.31402 -9.13823 -8.54454 -8.38646 -8.20577 -6.76743 -5.64218 -2.98560 0.87146 1.31454 3.13780 3.15705 3.44089 3.48726 3.51755 3.59962 3.98987 4.54986 4.61292 4.64488 4.82231 4.91379 4.93580 5.08734 5.13197 5.17506 5.27548 5.33040 5.36324 5.51988 5.60466 5.60544 5.71063 5.74394 5.82917 5.99712 6.05285 6.06005 6.10830 6.15639 6.21884 6.28716 6.31352 6.42916 6.56664 6.59649 6.68795 6.88667 7.02968 7.38096 7.63473 7.70117 7.92871 8.05421 8.32215 8.77299 9.27340 9.88403 10.54258 11.46543 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.003613 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.273524 B = 7748.041745 C = 8363.162689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.275 6.275 4 C 0.186 3.814 5 C -0.224 4.224 6 C -0.059 4.059 7 C -0.170 4.170 8 C -0.047 4.047 9 C -0.163 4.163 10 C 0.556 3.444 11 O -0.516 6.516 12 N -0.712 5.712 13 C 0.123 3.877 14 H 0.087 0.913 15 C 0.172 3.828 16 N -0.606 5.606 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.114 4.114 27 H 0.076 0.924 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.252 0.748 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -14.747 11.943 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.187 6.187 4 C 0.137 3.863 5 C -0.243 4.243 6 C -0.077 4.077 7 C -0.188 4.188 8 C -0.066 4.066 9 C -0.167 4.167 10 C 0.343 3.657 11 O -0.392 6.392 12 N -0.363 5.363 13 C 0.019 3.981 14 H 0.105 0.895 15 C 0.047 3.953 16 N -0.333 5.333 17 C -0.360 4.360 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.563 5.563 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.134 4.134 27 H 0.095 0.905 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.226 0.774 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.796 -14.734 11.707 20.008 hybrid contribution 0.604 0.238 -1.009 1.200 sum 7.400 -14.496 10.698 19.477 Atomic orbital electron populations 1.21738 0.92506 1.02313 1.04232 1.22864 0.96491 0.82373 1.00908 1.86428 1.17678 1.28158 1.86389 1.19034 0.83214 0.92636 0.91405 1.21218 0.94384 0.97913 1.10738 1.21065 0.94222 0.97434 0.95015 1.20956 1.00021 0.92200 1.05627 1.21212 0.91300 0.99545 0.94561 1.19533 0.93699 0.91680 1.11815 1.17889 0.87920 0.82682 0.77256 1.90823 1.14295 1.85717 1.48386 1.45821 1.09764 1.05409 1.75324 1.22454 0.92608 0.82847 1.00228 0.89471 1.21480 1.00979 0.83684 0.89193 1.44413 1.83066 1.01683 1.04098 1.19049 1.42425 0.89828 0.84680 0.90341 1.24842 1.02054 0.95812 0.97574 1.70007 1.55612 1.07491 1.23154 0.86139 0.77332 0.79221 0.83336 1.21684 1.21801 1.20620 1.21615 0.95690 0.94283 0.86922 1.22645 0.99832 0.96350 0.94577 0.90535 1.21690 1.01778 1.00907 0.95069 0.91107 0.90692 0.91356 0.92137 0.92267 0.85082 0.85584 0.85413 0.84961 0.77362 0.93065 0.93628 0.93759 0.94008 0.96147 0.93097 0.92842 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 37.16 0.38 -1.15 16 2 C 0.05 0.54 5.46 37.16 0.20 0.74 16 3 O -0.28 -4.41 8.21 -40.54 -0.33 -4.74 16 4 C 0.19 2.75 6.70 -38.70 -0.26 2.49 16 5 C -0.22 -2.49 9.03 -39.48 -0.36 -2.85 16 6 C -0.06 -0.56 10.03 -39.53 -0.40 -0.96 16 7 C -0.17 -1.69 10.02 -39.63 -0.40 -2.08 16 8 C -0.05 -0.57 9.54 -39.19 -0.37 -0.94 16 9 C -0.16 -2.55 5.89 -104.84 -0.62 -3.16 16 10 C 0.56 10.58 7.76 -12.47 -0.10 10.49 16 11 O -0.52 -11.90 14.84 -16.59 -0.25 -12.14 16 12 N -0.71 -12.43 5.06 -53.07 -0.27 -12.70 16 13 C 0.12 2.48 2.74 -66.09 -0.18 2.30 16 14 H 0.09 1.87 7.51 -51.93 -0.39 1.48 16 15 C 0.17 4.45 5.14 -3.06 -0.02 4.43 16 16 N -0.61 -15.95 3.40 -169.94 -0.58 -16.53 16 17 C -0.23 -6.63 10.27 -15.06 -0.15 -6.78 16 18 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -28.14 10.36 55.49 0.57 -27.56 16 21 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.14 2.95 6.72 -2.41 -0.02 2.94 16 26 C -0.11 -1.97 3.27 -88.35 -0.29 -2.26 16 27 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 28 C -0.14 -1.89 9.32 37.16 0.35 -1.54 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 33 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.13 1.13 6.30 -52.48 -0.33 0.80 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.31 6.40 -52.49 -0.34 0.97 16 38 H 0.39 5.59 6.57 -40.82 -0.27 5.32 16 39 H 0.05 1.45 7.18 -51.93 -0.37 1.08 16 40 H 0.05 1.37 7.61 -51.93 -0.40 0.98 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -35.80 372.47 -9.65 -45.45 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.07 Total: 3.61 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.32 Total: 1.38 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.27 Total: -56.78 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.58 Total: -16.89 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.80 -9.65 -45.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080876207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.361 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds