Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.46840 * 2 1 4 4 C 1.35654 * 116.99510 * 180.02562 * 3 2 1 5 5 C 1.38707 * 120.15300 * 0.22901 * 4 3 2 6 6 C 1.38054 * 120.08645 * 180.27922 * 5 4 3 7 7 C 1.38553 * 120.39050 * 359.74296 * 6 5 4 8 8 C 1.37786 * 120.29846 * 359.97438 * 7 6 5 9 9 C 1.39717 * 119.90806 * 0.02562 * 8 7 6 10 10 C 1.47534 * 120.18993 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99693 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00232 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00048 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.63660 * 34.30799 * 13 12 10 15 15 C 1.54324 * 110.72365 * 271.16056 * 13 12 10 16 16 N 1.47022 * 107.27020 * 219.44316 * 15 13 12 17 17 C 1.36931 * 125.64496 * 178.90473 * 16 15 13 18 18 H 1.08005 * 120.00166 * 174.87677 * 17 16 15 19 19 C 1.38809 * 120.00502 * 354.87648 * 17 16 15 20 20 N 1.31622 * 119.99778 * 7.06309 * 19 17 16 21 21 Si 1.86794 * 120.00419 * 187.06156 * 19 17 16 22 22 H 1.48501 * 109.47178 * 94.98880 * 21 19 17 23 23 H 1.48500 * 109.47342 * 214.98694 * 21 19 17 24 24 H 1.48504 * 109.47285 * 334.98842 * 21 19 17 25 25 C 1.47426 * 108.70284 * 358.94254 * 16 15 13 26 26 C 1.55121 * 104.94498 * 24.00510 * 25 16 15 27 27 H 1.08994 * 110.94010 * 81.21260 * 26 25 16 28 28 C 1.53002 * 111.15895 * 205.13472 * 26 25 16 29 29 H 1.08993 * 109.47373 * 60.00260 * 1 2 3 30 30 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47278 * 300.00141 * 1 2 3 32 32 H 1.09000 * 109.46820 * 239.99586 * 2 1 3 33 33 H 1.09001 * 109.46761 * 119.99737 * 2 1 3 34 34 H 1.08004 * 119.96099 * 0.04175 * 5 4 3 35 35 H 1.08003 * 119.80780 * 179.71777 * 6 5 4 36 36 H 1.07996 * 119.85562 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.05247 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99996 * 0.28165 * 12 10 9 39 39 H 1.08994 * 109.87947 * 338.86097 * 15 13 12 40 40 H 1.08997 * 109.87915 * 99.86961 * 15 13 12 41 41 H 0.97002 * 120.00193 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36288 * 142.97066 * 25 16 15 43 43 H 1.09004 * 110.36497 * 265.17788 * 25 16 15 44 44 H 1.09001 * 109.46844 * 172.16904 * 28 26 25 45 45 H 1.08997 * 109.46882 * 292.16103 * 28 26 25 46 46 H 1.08997 * 109.47472 * 52.16657 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5250 -0.0005 5 6 4.1990 0.4272 -0.0059 6 6 5.5674 0.6096 -0.0006 7 6 6.1043 1.8869 0.0047 8 6 5.2769 2.9887 0.0042 9 6 3.8902 2.8185 -0.0011 10 6 2.9985 3.9939 -0.0012 11 8 1.7922 3.8418 -0.0063 12 7 3.5210 5.2362 0.0045 13 6 2.6355 6.4034 0.0039 14 1 1.7296 6.1986 0.5744 15 6 2.2883 6.8247 -1.4395 16 7 2.2923 8.2944 -1.4781 17 6 2.0521 9.0642 -2.5848 18 1 1.9961 10.1390 -2.4932 19 6 1.8805 8.4635 -3.8243 20 7 1.8097 7.1524 -3.9161 21 14 1.7500 9.5157 -5.3622 22 1 3.0869 9.6307 -5.9983 23 1 0.8013 8.8848 -6.3147 24 1 1.2579 10.8683 -4.9964 25 6 2.5986 8.8019 -0.1283 26 6 3.3692 7.6492 0.5672 27 1 4.4190 7.6500 0.2742 28 6 3.2264 7.7284 2.0884 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7881 -0.5716 -0.0103 35 1 6.2234 -0.2484 -0.0001 36 1 7.1761 2.0196 0.0084 37 1 5.6997 3.9825 0.0087 38 1 4.4834 5.3576 0.0044 39 1 3.0358 6.4337 -2.1297 40 1 1.3019 6.4471 -1.7088 41 1 1.6894 6.7326 -4.7822 42 1 3.2229 9.6933 -0.1909 43 1 1.6780 9.0217 0.4123 44 1 3.6571 6.8351 2.5408 45 1 3.7498 8.6106 2.4570 46 1 2.1708 7.7959 2.3513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080876207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -44.569091 kcal Electronic energy + Delta-G solvation = -27093.969746 eV Core-core repulsion = 23369.691454 eV Total energy + Delta-G solvation = -3724.278292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61120 -40.42255 -38.99178 -38.29634 -35.62010 -34.33315 -32.92958 -32.28062 -32.01515 -30.54016 -29.38564 -27.38834 -25.69267 -25.09224 -24.27064 -22.59354 -22.26372 -21.53772 -21.02896 -19.45120 -18.88551 -18.15738 -17.54215 -17.11266 -16.91604 -16.59140 -16.03432 -15.82337 -15.63372 -15.49411 -15.09367 -14.67841 -14.36329 -14.25669 -14.18603 -14.06970 -13.72563 -13.41156 -13.35476 -13.05242 -12.91960 -12.90302 -12.86518 -12.61504 -12.53696 -12.17688 -12.04292 -11.97404 -11.87959 -11.67600 -11.65691 -11.45891 -10.81481 -10.73371 -10.13747 -9.90187 -9.20401 -8.94125 -7.86548 -5.24447 -0.10142 0.43538 1.43121 1.46101 1.55441 1.94297 2.18443 2.27706 2.48901 2.89313 3.31235 3.54513 3.70682 3.78875 3.82023 3.99306 4.01924 4.05642 4.09459 4.18267 4.25350 4.34169 4.40735 4.49956 4.50942 4.60430 4.72065 4.81983 4.87029 4.87950 4.88570 5.05285 5.07054 5.14467 5.21866 5.24509 5.29505 5.34858 5.43062 5.47742 5.49163 5.61865 5.78620 5.81192 6.14819 6.45310 6.66145 7.04313 7.35046 7.74069 8.38999 9.23218 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.003613 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.273524 B = 7748.041745 C = 8363.162689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.319 6.319 4 C 0.160 3.840 5 C -0.223 4.223 6 C -0.045 4.045 7 C -0.164 4.164 8 C -0.049 4.049 9 C -0.202 4.202 10 C 0.549 3.451 11 O -0.572 6.572 12 N -0.700 5.700 13 C 0.138 3.862 14 H 0.068 0.932 15 C 0.190 3.810 16 N -0.627 5.627 17 C -0.244 4.244 18 H 0.090 0.910 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.982 3.018 22 H -0.283 1.283 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.133 3.867 26 C -0.093 4.093 27 H 0.094 0.906 28 C -0.128 4.128 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.410 0.590 39 H 0.018 0.982 40 H -0.017 1.017 41 H 0.244 0.756 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.304 -15.368 13.326 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.231 6.231 4 C 0.112 3.888 5 C -0.241 4.241 6 C -0.063 4.063 7 C -0.181 4.181 8 C -0.067 4.067 9 C -0.206 4.206 10 C 0.338 3.662 11 O -0.452 6.452 12 N -0.352 5.352 13 C 0.032 3.968 14 H 0.086 0.914 15 C 0.063 3.937 16 N -0.354 5.354 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.809 3.191 22 H -0.210 1.210 23 H -0.226 1.226 24 H -0.187 1.187 25 C 0.008 3.992 26 C -0.112 4.112 27 H 0.112 0.888 28 C -0.186 4.186 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.174 0.826 35 H 0.186 0.814 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.247 0.753 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.213 -15.323 13.136 22.620 hybrid contribution -0.437 0.365 -1.419 1.529 sum 9.776 -14.959 11.718 21.369 Atomic orbital electron populations 1.21788 0.92594 1.03980 1.02335 1.23157 0.96555 0.80940 1.02727 1.86383 1.18948 1.30968 1.86834 1.19426 0.83360 0.93553 0.92509 1.21541 0.94894 0.97839 1.09877 1.21622 0.93900 0.98793 0.91975 1.21414 1.01522 0.91548 1.03666 1.21459 0.89825 1.01456 0.93987 1.19473 0.94744 0.90526 1.15881 1.18628 0.87893 0.83891 0.75745 1.90780 1.16845 1.86545 1.51002 1.45631 1.10323 1.04429 1.74848 1.22024 0.93398 0.85189 0.96216 0.91351 1.21082 0.96539 0.83869 0.92203 1.44740 1.82974 1.01828 1.05834 1.19550 1.41369 0.90676 0.85698 0.89209 1.25781 1.02422 0.96990 1.01001 1.70290 1.57298 1.09548 1.23137 0.85009 0.77180 0.78042 0.78819 1.20951 1.22637 1.18699 1.21894 0.96589 0.96183 0.84558 1.22579 0.99604 0.92253 0.96805 0.88759 1.21644 1.02085 1.03070 0.91765 0.93524 0.87144 0.92704 0.90630 0.89801 0.82574 0.81441 0.81820 0.83364 0.75273 0.96425 0.99893 0.94695 0.92275 0.95840 0.91503 0.89978 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.04 0.89 5.46 71.98 0.39 1.28 16 3 O -0.32 -10.83 8.21 -68.77 -0.56 -11.40 16 4 C 0.16 4.80 6.70 22.84 0.15 4.95 16 5 C -0.22 -4.46 9.03 22.34 0.20 -4.26 16 6 C -0.04 -0.67 10.03 22.30 0.22 -0.44 16 7 C -0.16 -2.61 10.02 22.24 0.22 -2.39 16 8 C -0.05 -1.09 9.54 22.52 0.21 -0.87 16 9 C -0.20 -6.46 5.89 -20.01 -0.12 -6.58 16 10 C 0.55 22.29 7.76 86.70 0.67 22.96 16 11 O -0.57 -28.87 14.84 16.92 0.25 -28.62 16 12 N -0.70 -25.37 5.06 -440.07 -2.23 -27.60 16 13 C 0.14 5.80 2.74 46.18 0.13 5.93 16 14 H 0.07 3.14 7.51 -2.39 -0.02 3.13 16 15 C 0.19 10.49 5.14 86.73 0.45 10.94 16 16 N -0.63 -34.13 3.40 -691.57 -2.35 -36.48 16 17 C -0.24 -14.30 10.27 84.03 0.86 -13.43 16 18 H 0.09 4.92 7.84 -2.91 -0.02 4.90 16 19 C -0.07 -4.16 5.48 84.86 0.46 -3.70 16 20 N -0.95 -62.13 10.36 21.65 0.22 -61.90 16 21 Si 0.98 47.73 29.56 68.60 2.03 49.75 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 25 C 0.13 5.48 6.72 86.93 0.58 6.07 16 26 C -0.09 -3.09 3.27 -9.32 -0.03 -3.12 16 27 H 0.09 2.85 8.00 -2.39 -0.02 2.83 16 28 C -0.13 -3.20 9.32 71.98 0.67 -2.53 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.38 7.65 -2.39 -0.02 1.36 16 33 H 0.08 1.37 7.67 -2.39 -0.02 1.36 16 34 H 0.16 2.21 6.30 -2.91 -0.02 2.19 16 35 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.15 2.64 6.40 -2.91 -0.02 2.62 16 38 H 0.41 11.56 6.57 -92.71 -0.61 10.95 16 39 H 0.02 1.07 7.18 -2.39 -0.02 1.06 16 40 H -0.02 -1.15 7.61 -2.39 -0.02 -1.16 16 41 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.02 0.97 7.99 -2.38 -0.02 0.95 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 Total: -1.00 -87.37 372.47 3.56 -83.81 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.37 Total: 20.10 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 5.83 Total: 12.35 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -4.35 Total: -125.98 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.31 Total: -40.02 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -87.37 3.56 -83.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080876207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.237 kcal (2) G-P(sol) polarization free energy of solvation -87.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds