Wall clock time and date at job start Tue Mar 31 2020 12:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00122 * 2 1 4 4 N 1.34781 * 119.99870 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00179 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46991 * 179.97438 * 5 4 2 7 7 H 1.08997 * 112.84679 * 43.80719 * 6 5 4 8 8 C 1.53784 * 113.60880 * 175.00179 * 6 5 4 9 9 C 1.53775 * 87.08037 * 89.11959 * 8 6 5 10 10 H 1.08999 * 113.61569 * 270.88361 * 9 8 6 11 11 N 1.46897 * 113.61733 * 140.06293 * 9 8 6 12 12 C 1.46896 * 111.00434 * 156.52682 * 11 9 8 13 13 C 1.50705 * 109.47487 * 180.02562 * 12 11 9 14 14 C 1.38298 * 119.93011 * 269.72783 * 13 12 11 15 15 C 1.38102 * 120.07103 * 179.72175 * 14 13 12 16 16 C 1.38885 * 119.92206 * 0.55111 * 15 14 13 17 17 O 1.35752 * 120.06219 * 179.75129 * 16 15 14 18 18 C 1.34832 * 116.99915 * 174.44369 * 17 16 15 19 19 H 1.08001 * 119.99890 * 5.04322 * 18 17 16 20 20 C 1.38652 * 120.00031 * 185.05116 * 18 17 16 21 21 N 1.31558 * 119.99816 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99991 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47215 * 90.00065 * 22 20 18 24 24 H 1.48503 * 109.46932 * 209.99839 * 22 20 18 25 25 H 1.48498 * 109.47088 * 329.99796 * 22 20 18 26 26 C 1.38873 * 119.86502 * 359.72145 * 16 15 14 27 27 C 1.38099 * 119.93255 * 0.02562 * 26 16 15 28 28 C 1.53778 * 87.17645 * 25.47137 * 9 8 6 29 29 H 1.09004 * 109.46693 * 269.99706 * 1 2 3 30 30 H 1.09009 * 109.47092 * 29.99017 * 1 2 3 31 31 H 1.08999 * 109.47494 * 149.99115 * 1 2 3 32 32 H 0.97002 * 119.99703 * 359.97438 * 4 2 1 33 33 H 1.09006 * 109.46821 * 59.99767 * 5 4 2 34 34 H 1.08991 * 109.47110 * 300.00043 * 5 4 2 35 35 H 1.08997 * 113.61569 * 334.56848 * 8 6 5 36 36 H 1.09004 * 113.60791 * 203.66644 * 8 6 5 37 37 H 1.00903 * 111.00127 * 32.57265 * 11 9 8 38 38 H 1.09002 * 109.47220 * 299.99857 * 12 11 9 39 39 H 1.09004 * 109.47059 * 59.99741 * 12 11 9 40 40 H 1.08001 * 119.96606 * 359.97438 * 14 13 12 41 41 H 1.07993 * 120.04086 * 180.27378 * 15 14 13 42 42 H 0.97001 * 119.99558 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.03295 * 179.97438 * 26 16 15 44 44 H 1.08007 * 119.96642 * 179.97438 * 27 26 16 45 45 H 1.09004 * 113.61888 * 89.07245 * 28 9 8 46 46 H 1.08998 * 113.61816 * 219.98316 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1558 -2.6099 -0.0010 7 1 3.6131 -3.2506 -0.6959 8 6 5.6845 -2.7228 -0.1243 9 6 5.7350 -2.6486 1.4108 10 1 5.8034 -1.6315 1.7968 11 7 6.7233 -3.5543 2.0116 12 6 7.1313 -3.0812 3.3411 13 6 8.1437 -4.0332 3.9242 14 6 7.7224 -5.1021 4.6940 15 6 8.6472 -5.9795 5.2251 16 6 10.0023 -5.7809 4.9948 17 8 10.9142 -6.6387 5.5197 18 6 12.2019 -6.4563 5.1639 19 1 12.4791 -5.6078 4.5559 20 6 13.1701 -7.3581 5.5784 21 7 14.4264 -7.1803 5.2308 22 14 12.6906 -8.8254 6.6303 23 1 12.3511 -9.9740 5.7524 24 1 13.8272 -9.1951 7.5117 25 1 11.5125 -8.4736 7.4630 26 6 10.4225 -4.7033 4.2261 27 6 9.4924 -3.8325 3.6935 28 6 4.3041 -3.2118 1.4093 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5140 32 1 1.6958 -2.0073 -0.0005 33 1 4.0095 -0.6536 0.8889 34 1 4.0089 -0.6534 -0.8910 35 1 6.1470 -1.8683 -0.6182 36 1 6.0206 -3.6785 -0.5266 37 1 7.5232 -3.6688 1.4073 38 1 7.5744 -2.0891 3.2535 39 1 6.2592 -3.0334 3.9932 40 1 6.6687 -5.2531 4.8767 41 1 8.3174 -6.8165 5.8224 42 1 15.1037 -7.8115 5.5205 43 1 11.4757 -4.5461 4.0456 44 1 9.8186 -2.9941 3.0959 45 1 4.2635 -4.3010 1.4255 46 1 3.6529 -2.7518 2.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086287821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:01 Heat of formation + Delta-G solvation = -24.710769 kcal Electronic energy + Delta-G solvation = -24925.934980 eV Core-core repulsion = 21202.517809 eV Total energy + Delta-G solvation = -3723.417170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34257 -39.38578 -39.07105 -37.01851 -35.16540 -33.83664 -32.37346 -30.76010 -30.25765 -29.51618 -26.99835 -26.04064 -25.52476 -24.02466 -22.61396 -22.04762 -20.98507 -20.40898 -19.15469 -17.90032 -17.31231 -17.10707 -16.89986 -16.16805 -15.69390 -15.43824 -15.12677 -14.63215 -14.55010 -14.05189 -13.95251 -13.88826 -13.73824 -13.47836 -13.16234 -13.07375 -12.68095 -12.63669 -12.53827 -12.45662 -12.19209 -11.90134 -11.87212 -11.45660 -11.22648 -10.90202 -10.77244 -10.67109 -10.62991 -10.42194 -10.23758 -10.14827 -9.48468 -9.39716 -8.88197 -8.43751 -8.25387 -7.32979 -6.42865 -4.09542 2.12760 2.17699 2.24903 2.79658 3.21183 3.24936 3.39555 4.11760 4.18020 4.22729 4.31599 4.34843 4.48033 4.53078 4.65867 4.76283 4.86125 4.91769 4.96202 5.09561 5.13624 5.27498 5.29346 5.35723 5.39264 5.43494 5.56140 5.60211 5.66225 5.74756 5.76020 5.81524 5.90332 6.04725 6.08424 6.12308 6.33761 6.57170 6.78395 6.98512 7.07587 7.11675 7.24387 7.27637 7.42184 7.60912 7.78906 7.81579 8.02782 8.92477 9.54995 10.64750 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.039894 B = 0.001750 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.690738 B =15997.856663 C =16205.108600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.549 6.549 4 N -0.729 5.729 5 C 0.135 3.865 6 C -0.127 4.127 7 H 0.085 0.915 8 C -0.132 4.132 9 C 0.057 3.943 10 H 0.070 0.930 11 N -0.673 5.673 12 C 0.116 3.884 13 C -0.176 4.176 14 C -0.054 4.054 15 C -0.194 4.194 16 C 0.161 3.839 17 O -0.218 6.218 18 C -0.390 4.390 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.222 4.222 27 C -0.068 4.068 28 C -0.120 4.120 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.344 0.656 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.172 9.225 -10.741 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.426 6.426 4 N -0.381 5.381 5 C 0.011 3.989 6 C -0.147 4.147 7 H 0.103 0.897 8 C -0.170 4.170 9 C -0.053 4.053 10 H 0.088 0.912 11 N -0.304 5.304 12 C -0.012 4.012 13 C -0.178 4.178 14 C -0.073 4.073 15 C -0.213 4.213 16 C 0.109 3.891 17 O -0.123 6.123 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.241 4.241 27 C -0.086 4.086 28 C -0.158 4.158 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.163 0.837 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.970 9.290 -10.313 28.568 hybrid contribution 0.493 -0.286 0.127 0.584 sum -24.477 9.004 -10.186 27.999 Atomic orbital electron populations 1.21887 0.91614 1.04883 1.04867 1.20849 0.90687 0.83456 0.75553 1.90741 1.70881 1.31480 1.49537 1.46096 1.07537 1.08823 1.75685 1.21190 0.79453 0.95756 1.02472 1.22487 0.97391 0.95403 0.99392 0.89661 1.23182 0.94589 1.02997 0.96237 1.23071 0.93652 0.94935 0.93691 0.91243 1.60717 1.17244 1.48341 1.04122 1.20689 0.96387 0.94293 0.89881 1.19192 0.93173 0.99961 1.05434 1.20462 0.97882 0.93208 0.95758 1.20226 0.90306 1.02944 1.07871 1.19146 0.89272 0.89411 0.91284 1.83575 1.17398 1.49548 1.61743 1.20767 0.78924 1.12727 1.34126 0.87654 1.24468 0.93986 0.98345 0.97194 1.69648 1.00230 1.37471 1.44381 0.86178 0.78666 0.81618 0.80420 1.19877 1.20784 1.18373 1.21236 1.00647 0.97596 1.04589 1.20649 0.92317 0.97773 0.97903 1.23160 0.96218 1.01587 0.94860 0.88786 0.88886 0.90163 0.76368 0.91232 0.91280 0.91254 0.88697 0.83720 0.95318 0.91159 0.86918 0.86584 0.91054 0.85027 0.87647 0.88873 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.30 36.01 0.37 -0.31 16 2 C 0.51 4.12 7.94 -10.98 -0.09 4.03 16 3 O -0.55 -7.20 17.10 5.56 0.10 -7.10 16 4 N -0.73 -4.46 5.56 -60.29 -0.33 -4.79 16 5 C 0.13 0.98 5.36 -4.04 -0.02 0.96 16 6 C -0.13 -0.79 3.95 -89.66 -0.35 -1.15 16 7 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 8 C -0.13 -0.96 7.26 -25.92 -0.19 -1.15 16 9 C 0.06 0.50 3.77 -66.91 -0.25 0.25 16 10 H 0.07 0.65 7.45 -51.93 -0.39 0.26 16 11 N -0.67 -7.60 6.54 -107.14 -0.70 -8.30 16 12 C 0.12 1.47 5.66 -4.98 -0.03 1.44 16 13 C -0.18 -2.83 5.40 -104.58 -0.56 -3.39 16 14 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 15 C -0.19 -3.83 9.99 -39.39 -0.39 -4.22 16 16 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 17 O -0.22 -5.74 8.59 0.04 0.00 -5.74 16 18 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 19 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 22 Si 0.91 21.64 28.62 -169.99 -4.86 16.78 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.22 -4.72 9.17 -39.40 -0.36 -5.08 16 27 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 28 C -0.12 -0.92 7.43 -25.78 -0.19 -1.11 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.40 1.34 8.47 -40.82 -0.35 0.99 16 33 H 0.07 0.61 7.39 -51.93 -0.38 0.23 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.34 3.94 8.55 -39.29 -0.34 3.60 16 38 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 39 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.96 5.64 -52.49 -0.30 2.67 16 44 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -32.29 384.16 -9.21 -41.50 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.08 Total: 4.58 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.89 Total: -18.15 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.26 Total: -37.65 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.10 Total: -12.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.29 -9.21 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086287821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.787 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds