Wall clock time and date at job start Tue Mar 31 2020 12:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47084 * 2 1 4 4 C 1.35909 * 116.99917 * 180.02562 * 3 2 1 5 5 C 1.38856 * 119.98924 * 359.97438 * 4 3 2 6 6 C 1.38237 * 120.24280 * 180.02562 * 5 4 3 7 7 C 1.38014 * 120.20596 * 359.97438 * 6 5 4 8 8 C 1.39561 * 119.96298 * 359.97438 * 7 6 5 9 9 C 1.47862 * 120.11766 * 180.02562 * 8 7 6 10 10 O 1.21553 * 120.00088 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99564 * 0.27713 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72337 * 11 9 8 13 13 C 1.52999 * 109.47192 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.84854 * 45.32745 * 13 12 11 15 15 C 1.53772 * 113.61665 * 176.53007 * 13 12 11 16 16 C 1.53774 * 87.08344 * 139.97579 * 15 13 12 17 17 H 1.09000 * 113.62018 * 219.93521 * 16 15 13 18 18 N 1.46502 * 113.61589 * 89.11867 * 16 15 13 19 19 C 1.36932 * 120.00364 * 155.00201 * 18 16 15 20 20 H 1.07999 * 120.00106 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00110 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00098 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00141 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47151 * 59.99637 * 23 21 19 25 25 H 1.48496 * 109.47276 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46869 * 299.99935 * 23 21 19 27 27 C 1.53786 * 113.60850 * 274.13626 * 13 12 11 28 28 C 1.38455 * 119.98036 * 180.27955 * 4 3 2 29 29 H 1.08998 * 109.47059 * 299.99425 * 1 2 3 30 30 H 1.08996 * 109.47374 * 60.00419 * 1 2 3 31 31 H 1.09005 * 109.46545 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47282 * 240.00188 * 2 1 3 33 33 H 1.09002 * 109.47599 * 119.99971 * 2 1 3 34 34 H 1.07998 * 119.87345 * 0.02639 * 5 4 3 35 35 H 1.08000 * 119.90196 * 180.02562 * 6 5 4 36 36 H 1.07994 * 120.01791 * 179.97438 * 7 6 5 37 37 H 0.97000 * 120.00483 * 359.72769 * 11 9 8 38 38 H 1.09003 * 109.46699 * 299.99993 * 12 11 9 39 39 H 1.08993 * 109.47199 * 60.00006 * 12 11 9 40 40 H 1.09003 * 113.61614 * 254.52551 * 15 13 12 41 41 H 1.09008 * 113.61555 * 25.42836 * 15 13 12 42 42 H 0.97003 * 119.99631 * 335.00063 * 18 16 15 43 43 H 0.96995 * 120.00069 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.61692 * 334.56628 * 27 13 12 45 45 H 1.08999 * 113.61265 * 105.47448 * 27 13 12 46 46 H 1.07997 * 120.10804 * 359.97187 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1993 0.4240 -0.0005 6 6 5.5706 0.5991 -0.0005 7 6 6.1083 1.8701 -0.0011 8 6 5.2663 2.9832 -0.0022 9 6 5.8388 4.3465 -0.0034 10 8 5.1035 5.3144 -0.0039 11 7 7.1758 4.5159 -0.0090 12 6 7.7430 5.8666 -0.0163 13 6 9.2705 5.7784 -0.0224 14 1 9.6493 5.0464 -0.7356 15 6 9.9662 7.1466 -0.1155 16 6 10.9871 6.6087 0.9009 17 1 11.2859 7.3423 1.6496 18 7 12.1286 5.9294 0.2829 19 6 13.3230 5.8544 0.9483 20 1 13.4237 6.2963 1.9285 21 6 14.4044 5.2103 0.3629 22 7 14.2815 4.6712 -0.8316 23 14 16.0336 5.1072 1.2709 24 1 15.8398 4.3877 2.5553 25 1 17.0199 4.3749 0.4365 26 1 16.5364 6.4779 1.5423 27 6 9.8853 5.6466 1.3810 28 6 3.8825 2.8050 0.0053 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7841 -0.5730 -0.0005 35 1 6.2232 -0.2615 -0.0009 36 1 7.1800 2.0034 -0.0007 37 1 7.7626 3.7435 -0.0084 38 1 7.4066 6.3971 -0.9072 39 1 7.4133 6.4040 0.8728 40 1 10.3940 7.3530 -1.0966 41 1 9.3627 7.9703 0.2659 42 1 12.0382 5.5328 -0.5977 43 1 15.0372 4.2215 -1.2408 44 1 9.2597 6.0593 2.1724 45 1 10.2480 4.6437 1.6063 46 1 3.2259 3.6624 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086491568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:12 Heat of formation + Delta-G solvation = -42.676346 kcal Electronic energy + Delta-G solvation = -25217.345548 eV Core-core repulsion = 21493.149331 eV Total energy + Delta-G solvation = -3724.196216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55242 -40.66693 -39.85642 -38.18797 -36.08044 -35.00303 -32.94531 -32.46395 -31.88673 -30.59935 -28.65771 -26.42650 -25.92093 -25.28583 -23.73964 -23.45962 -22.84895 -21.42063 -20.08434 -19.50410 -19.22159 -17.68469 -17.45053 -17.08546 -17.03107 -16.68290 -16.46888 -16.37400 -15.79182 -15.67521 -15.02626 -14.79812 -14.73285 -14.62264 -14.38493 -14.25019 -13.74778 -13.39213 -13.28497 -13.09009 -12.98328 -12.90706 -12.86857 -12.62723 -12.59971 -12.18911 -12.06481 -11.92771 -11.67667 -11.56772 -11.46660 -11.13550 -10.90764 -10.76328 -10.27393 -9.98777 -9.31635 -8.98223 -7.93770 -5.21861 -0.26974 0.34745 1.49344 1.51567 1.57653 1.76788 1.92862 2.35054 2.57201 2.78574 3.38578 3.57312 3.73071 3.75218 3.79256 3.88669 4.00871 4.06605 4.08906 4.11808 4.19179 4.30398 4.33536 4.37208 4.41014 4.46993 4.72551 4.75111 4.80205 4.91007 4.94240 4.94539 5.00350 5.11486 5.14191 5.21797 5.25065 5.28876 5.33033 5.35932 5.47296 5.54877 5.61401 5.67212 6.29697 6.37878 6.45710 7.09768 7.34991 8.12170 8.34770 9.29141 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.002031 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.973527 B =13779.878558 C =14727.651285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.114 3.886 5 C -0.177 4.177 6 C -0.081 4.081 7 C -0.123 4.123 8 C -0.109 4.109 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.708 5.708 12 C 0.138 3.862 13 C -0.102 4.102 14 H 0.084 0.916 15 C -0.135 4.135 16 C 0.143 3.857 17 H 0.060 0.940 18 N -0.719 5.719 19 C -0.244 4.244 20 H 0.076 0.924 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.279 1.279 27 C -0.153 4.153 28 C -0.117 4.117 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.412 0.588 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.087 -11.993 1.820 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.069 3.931 5 C -0.196 4.196 6 C -0.098 4.098 7 C -0.142 4.142 8 C -0.112 4.112 9 C 0.342 3.658 10 O -0.461 6.461 11 N -0.359 5.359 12 C 0.015 3.985 13 C -0.121 4.121 14 H 0.102 0.898 15 C -0.174 4.174 16 C 0.033 3.967 17 H 0.078 0.922 18 N -0.357 5.357 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.206 1.206 27 C -0.194 4.194 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.579 -11.121 1.951 27.960 hybrid contribution 1.300 -0.524 -0.099 1.405 sum -24.279 -11.645 1.852 26.991 Atomic orbital electron populations 1.21822 0.91775 1.04248 1.03032 1.23142 0.96807 0.80402 1.02754 1.86091 1.18429 1.31850 1.88639 1.18885 0.83288 0.93636 0.97327 1.21792 0.94388 0.98846 1.04576 1.21313 0.94742 0.97633 0.96146 1.21517 1.00390 0.91909 1.00401 1.19626 0.93541 0.92782 1.05284 1.18536 0.82475 0.88929 0.75832 1.90740 1.60549 1.42825 1.52036 1.45896 1.06019 1.10380 1.73638 1.21378 0.92085 0.82977 1.02045 1.22497 0.92079 0.98971 0.98520 0.89800 1.23345 0.97497 0.96535 1.00002 1.21420 0.86451 0.93774 0.95010 0.92214 1.42280 1.07848 1.65879 1.19688 1.19637 0.89331 1.28649 0.99973 0.90620 1.25526 1.01623 1.01609 0.97827 1.69798 1.31650 1.43476 1.16909 0.85235 0.79555 0.77596 0.77505 1.20436 1.22272 1.20554 1.23740 0.98881 1.00774 0.95976 1.20419 0.94130 0.95962 1.03209 0.92098 0.92099 0.87914 0.90528 0.90519 0.82113 0.81721 0.83598 0.75034 0.91670 0.91181 0.92293 0.87688 0.79314 0.94035 0.89146 0.93090 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16 2 C 0.04 0.44 5.46 71.98 0.39 0.84 16 3 O -0.34 -6.43 10.13 -92.53 -0.94 -7.36 16 4 C 0.11 2.29 6.68 22.47 0.15 2.44 16 5 C -0.18 -2.53 9.03 22.42 0.20 -2.33 16 6 C -0.08 -1.11 10.03 22.22 0.22 -0.88 16 7 C -0.12 -2.19 9.54 22.54 0.21 -1.97 16 8 C -0.11 -2.61 5.87 -20.10 -0.12 -2.73 16 9 C 0.55 15.70 7.77 86.79 0.67 16.37 16 10 O -0.58 -20.70 16.35 -3.88 -0.06 -20.77 16 11 N -0.71 -17.29 5.51 -465.95 -2.57 -19.86 16 12 C 0.14 3.56 5.50 86.38 0.47 4.03 16 13 C -0.10 -2.87 3.62 -10.27 -0.04 -2.90 16 14 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.13 -4.06 7.39 31.12 0.23 -3.83 16 16 C 0.14 5.39 4.57 45.57 0.21 5.60 16 17 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 18 N -0.72 -35.02 5.31 -320.18 -1.70 -36.72 16 19 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 22 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 23 Si 0.97 45.30 29.55 68.60 2.03 47.32 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 C -0.15 -4.78 7.44 31.18 0.23 -4.55 16 28 C -0.12 -2.91 9.53 22.63 0.22 -2.70 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.08 0.57 7.66 -2.38 -0.02 0.55 16 33 H 0.08 0.57 7.66 -2.39 -0.02 0.55 16 34 H 0.16 1.26 6.28 -2.91 -0.02 1.25 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.15 2.06 6.40 -2.91 -0.02 2.04 16 37 H 0.41 8.39 6.50 -92.71 -0.60 7.79 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.82 7.88 -2.39 -0.02 1.80 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.10 2.63 8.10 -2.38 -0.02 2.61 16 42 H 0.37 19.51 7.90 -92.71 -0.73 18.78 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.09 2.45 7.92 -2.39 -0.02 2.43 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.12 3.42 7.65 -2.91 -0.02 3.40 16 Total: -1.00 -71.19 382.64 1.81 -69.38 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.34 Total: 34.78 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.11 Total: -9.16 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.98 Total: -114.19 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.00 Total: -28.13 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.19 1.81 -69.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086491568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.704 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds