Wall clock time and date at job start Tue Mar 31 2020 12:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47197 * 2 1 4 4 C 1.35703 * 116.99953 * 179.97438 * 3 2 1 5 5 C 1.38997 * 119.91074 * 180.02562 * 4 3 2 6 6 C 1.37706 * 120.08527 * 180.02562 * 5 4 3 7 7 C 1.39727 * 119.91544 * 359.97438 * 6 5 4 8 8 C 1.47598 * 120.09009 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00133 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00349 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00261 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.78041 * 328.23840 * 11 10 8 13 13 C 1.55153 * 110.72120 * 91.47914 * 11 10 8 14 14 C 1.54908 * 101.58630 * 153.86300 * 13 11 10 15 15 N 1.47424 * 104.82940 * 322.99437 * 14 13 11 16 16 C 1.36943 * 125.64758 * 204.09129 * 15 14 13 17 17 H 1.08001 * 120.00125 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99978 * 0.03639 * 16 15 14 19 19 N 1.31626 * 119.99681 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47197 * 90.00239 * 20 18 16 22 22 H 1.48496 * 109.47261 * 210.00377 * 20 18 16 23 23 H 1.48497 * 109.47335 * 330.00076 * 20 18 16 24 24 C 1.47022 * 108.70727 * 24.12438 * 15 14 13 25 25 H 1.09002 * 109.88254 * 239.52468 * 24 15 14 26 26 C 1.53003 * 109.88494 * 118.51215 * 24 15 14 27 27 C 1.39733 * 119.82459 * 0.27455 * 7 6 5 28 28 C 1.37710 * 119.90769 * 359.47335 * 27 7 6 29 29 H 1.09000 * 109.47448 * 59.99564 * 1 2 3 30 30 H 1.09004 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46668 * 299.99867 * 1 2 3 32 32 H 1.08999 * 109.46668 * 240.00133 * 2 1 3 33 33 H 1.09002 * 109.47069 * 120.00807 * 2 1 3 34 34 H 1.07993 * 119.95712 * 0.02562 * 5 4 3 35 35 H 1.08006 * 120.04325 * 179.97438 * 6 5 4 36 36 H 0.97002 * 119.99785 * 0.02562 * 10 8 7 37 37 H 1.09006 * 111.00338 * 35.79111 * 13 11 10 38 38 H 1.09003 * 111.00533 * 271.94067 * 13 11 10 39 39 H 1.08992 * 110.36921 * 204.15530 * 14 13 11 40 40 H 1.09001 * 110.45822 * 81.87204 * 14 13 11 41 41 H 0.96999 * 119.99612 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46713 * 61.71864 * 26 24 15 43 43 H 1.08998 * 109.47126 * 181.71763 * 26 24 15 44 44 H 1.09002 * 109.46967 * 301.72379 * 26 24 15 45 45 H 1.08004 * 120.04939 * 179.72526 * 27 7 6 46 46 H 1.08005 * 119.95527 * 180.25638 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5250 0.0005 5 6 3.8810 2.8103 0.0011 6 6 5.2457 2.9948 0.0011 7 6 6.0986 1.8881 0.0011 8 6 7.5618 2.0814 0.0017 9 8 8.0266 3.2050 0.0017 10 7 8.3829 1.0126 0.0022 11 6 9.8352 1.2045 0.0022 12 1 10.1051 2.1140 -0.5346 13 6 10.3843 1.2399 1.4529 14 6 11.8436 0.7635 1.2450 15 7 11.7586 -0.2636 0.1909 16 6 12.6587 -1.2755 -0.0118 17 1 12.5067 -1.9806 -0.8157 18 6 13.7665 -1.3953 0.8162 19 7 13.9514 -0.5364 1.7963 20 14 14.9946 -2.7752 0.5393 21 1 16.0532 -2.3156 -0.3954 22 1 15.6105 -3.1571 1.8354 23 1 14.2967 -3.9498 -0.0422 24 6 10.5480 -0.0212 -0.6073 25 1 9.8933 -0.8915 -0.5614 26 6 10.9314 0.2653 -2.0605 27 6 5.5625 0.5976 -0.0047 28 6 4.1968 0.4214 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 3.2212 3.6652 0.0015 35 1 5.6562 3.9938 0.0012 36 1 8.0121 0.1162 0.0018 37 1 9.8360 0.5505 2.0951 38 1 10.3574 2.2522 1.8563 39 1 12.2362 0.3312 2.1652 40 1 12.4718 1.5920 0.9176 41 1 14.7252 -0.6203 2.3751 42 1 11.4401 -0.6028 -2.4799 43 1 10.0317 0.4740 -2.6393 44 1 11.5958 1.1287 -2.0975 45 1 6.2184 -0.2604 -0.0092 46 1 3.7816 -0.5756 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089014290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:07 Heat of formation + Delta-G solvation = -43.640247 kcal Electronic energy + Delta-G solvation = -26154.386853 eV Core-core repulsion = 22430.148838 eV Total energy + Delta-G solvation = -3724.238014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54692 -40.71489 -39.30294 -38.04502 -35.66315 -33.96987 -32.91088 -32.07596 -31.96206 -31.10903 -30.04511 -26.66744 -25.85611 -24.97653 -24.35148 -22.77963 -22.07837 -21.59373 -21.20945 -19.44801 -18.73521 -18.50821 -17.60985 -17.07578 -16.88232 -16.43343 -16.02448 -15.94262 -15.72092 -15.36563 -15.09698 -14.62661 -14.49619 -14.28516 -14.23930 -13.99929 -13.75195 -13.67172 -13.24021 -13.17795 -12.94228 -12.88629 -12.74494 -12.63134 -12.60409 -12.24221 -12.11249 -11.97343 -11.76405 -11.64876 -11.57142 -11.43856 -11.01080 -10.72449 -10.11621 -10.07401 -9.27784 -8.89290 -7.73736 -5.18936 -0.13139 0.30841 1.49025 1.50713 1.59068 1.83081 2.08482 2.18066 2.53128 2.83122 3.36597 3.55078 3.68915 3.79283 3.85702 3.86727 3.96042 4.09076 4.12612 4.21139 4.21929 4.37531 4.41057 4.49979 4.53686 4.62546 4.67555 4.80641 4.86388 4.92638 4.95683 4.97128 5.05065 5.09034 5.12491 5.19251 5.29436 5.35040 5.35835 5.51067 5.59524 5.60681 5.65160 5.81021 6.31375 6.35748 6.55392 7.11942 7.21547 7.79645 8.43437 9.28164 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.002415 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.202096 B =11593.717510 C =12210.081244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.153 3.847 5 C -0.167 4.167 6 C -0.028 4.028 7 C -0.189 4.189 8 C 0.560 3.440 9 O -0.584 6.584 10 N -0.700 5.700 11 C 0.152 3.848 12 H 0.080 0.920 13 C -0.139 4.139 14 C 0.157 3.843 15 N -0.613 5.613 16 C -0.225 4.225 17 H 0.086 0.914 18 C -0.071 4.071 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.291 1.291 22 H -0.297 1.297 23 H -0.266 1.266 24 C 0.151 3.849 25 H 0.054 0.946 26 C -0.147 4.147 27 C -0.038 4.038 28 C -0.213 4.213 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.079 0.921 40 H -0.016 1.016 41 H 0.245 0.755 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.151 0.849 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.709 -0.715 -4.371 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.238 6.238 4 C 0.106 3.894 5 C -0.185 4.185 6 C -0.047 4.047 7 C -0.193 4.193 8 C 0.350 3.650 9 O -0.466 6.466 10 N -0.351 5.351 11 C 0.046 3.954 12 H 0.098 0.902 13 C -0.178 4.178 14 C 0.032 3.968 15 N -0.339 5.339 16 C -0.354 4.354 17 H 0.104 0.896 18 C -0.263 4.263 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.191 1.191 24 C 0.044 3.956 25 H 0.072 0.928 26 C -0.206 4.206 27 C -0.056 4.056 28 C -0.232 4.232 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.002 0.998 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.169 0.831 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.365 0.085 -4.300 27.701 hybrid contribution 1.263 -0.804 0.071 1.498 sum -26.102 -0.719 -4.229 26.452 Atomic orbital electron populations 1.21819 0.91596 1.04202 1.03203 1.23176 0.96898 0.80405 1.02862 1.86047 1.18438 1.31838 1.87526 1.19408 0.82946 0.94323 0.92682 1.20528 0.94520 0.95932 1.07556 1.21103 0.92099 0.98922 0.92595 1.19751 0.91388 0.95538 1.12593 1.18572 0.87198 0.84090 0.75120 1.90746 1.78334 1.25179 1.52328 1.45741 1.05514 1.09603 1.74262 1.21737 0.79188 0.98223 0.96260 0.90180 1.23205 0.97551 1.00653 0.96427 1.21673 0.91413 0.89398 0.94358 1.44731 1.24520 1.31048 1.33565 1.19398 1.00779 1.03776 1.11425 0.89577 1.25634 1.00675 1.01606 0.98413 1.70049 1.29899 1.39004 1.21185 0.85059 0.78825 0.79021 0.76313 1.21841 1.22324 1.19052 1.21199 0.88591 0.94640 0.91147 0.92832 1.22129 1.00818 1.00823 0.96874 1.21343 0.95529 0.95793 0.92965 1.21448 0.93387 0.99417 1.08935 0.91828 0.88235 0.91900 0.90491 0.90598 0.83289 0.84660 0.75023 0.91017 0.91715 0.90353 0.99759 0.94480 0.93191 0.91193 0.94641 0.83106 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 71.98 0.74 -0.21 16 2 C 0.04 0.36 5.45 71.98 0.39 0.75 16 3 O -0.32 -5.11 10.12 -90.24 -0.91 -6.03 16 4 C 0.15 2.66 6.70 22.63 0.15 2.81 16 5 C -0.17 -3.15 9.97 22.33 0.22 -2.93 16 6 C -0.03 -0.64 9.58 22.50 0.22 -0.42 16 7 C -0.19 -4.52 5.87 -20.09 -0.12 -4.63 16 8 C 0.56 17.13 7.76 86.71 0.67 17.80 16 9 O -0.58 -22.60 15.99 -3.99 -0.06 -22.66 16 10 N -0.70 -19.97 5.13 -440.00 -2.26 -22.23 16 11 C 0.15 5.49 2.85 46.18 0.13 5.63 16 12 H 0.08 3.20 7.27 -2.38 -0.02 3.18 16 13 C -0.14 -5.58 6.77 31.98 0.22 -5.36 16 14 C 0.16 7.93 5.89 86.85 0.51 8.44 16 15 N -0.61 -30.62 3.13 -668.25 -2.09 -32.71 16 16 C -0.22 -12.15 9.87 84.03 0.83 -11.32 16 17 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 19 N -0.95 -56.68 10.09 21.65 0.22 -56.46 16 20 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.15 5.87 3.47 45.34 0.16 6.03 16 25 H 0.05 1.92 7.72 -2.39 -0.02 1.90 16 26 C -0.15 -5.29 9.15 71.98 0.66 -4.64 16 27 C -0.04 -0.66 9.53 22.51 0.21 -0.45 16 28 C -0.21 -3.18 9.01 22.33 0.20 -2.98 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.51 7.65 -2.39 -0.02 0.49 16 33 H 0.08 0.52 7.65 -2.39 -0.02 0.50 16 34 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.14 3.18 7.64 -2.91 -0.02 3.16 16 36 H 0.41 9.12 6.39 -92.71 -0.59 8.53 16 37 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 40 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.15 1.94 6.40 -2.91 -0.02 1.92 16 46 H 0.16 1.44 6.28 -2.91 -0.02 1.42 16 Total: -1.00 -71.03 373.20 2.98 -68.06 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.39 Total: 19.84 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.66 Total: 5.01 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.13 Total: -111.40 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.98 Total: -28.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.03 2.98 -68.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089014290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.416 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds