Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47138 * 2 1 4 4 C 1.35656 * 117.00080 * 180.02562 * 3 2 1 5 5 C 1.38714 * 120.14898 * 359.97394 * 4 3 2 6 6 C 1.38051 * 120.08468 * 180.02562 * 5 4 3 7 7 C 1.38555 * 120.38906 * 0.02562 * 6 5 4 8 8 C 1.37786 * 120.30047 * 359.97438 * 7 6 5 9 9 C 1.39705 * 119.90589 * 359.97438 * 8 7 6 10 10 C 1.47536 * 120.18834 * 180.02562 * 9 8 7 11 11 O 1.21590 * 119.99991 * 179.97438 * 10 9 8 12 12 N 1.34784 * 120.00172 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99960 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46928 * 179.97438 * 13 12 10 15 15 C 1.53778 * 113.61541 * 274.14100 * 14 13 12 16 16 C 1.53956 * 87.01797 * 220.04656 * 15 14 13 17 17 N 1.46507 * 113.53792 * 270.81171 * 16 15 14 18 18 C 1.36934 * 119.99467 * 252.49351 * 17 16 15 19 19 H 1.07998 * 120.00640 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99651 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46864 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47101 * 120.00229 * 22 20 18 25 25 H 1.48501 * 109.46936 * 239.99764 * 22 20 18 26 26 C 1.53781 * 113.61618 * 176.52776 * 14 13 12 27 27 H 1.08999 * 109.47346 * 300.00152 * 1 2 3 28 28 H 1.09005 * 109.47122 * 60.00352 * 1 2 3 29 29 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47346 * 239.99848 * 2 1 3 31 31 H 1.08996 * 109.47271 * 119.99923 * 2 1 3 32 32 H 1.07996 * 119.95854 * 0.02688 * 5 4 3 33 33 H 1.07997 * 119.80546 * 180.27593 * 6 5 4 34 34 H 1.07998 * 119.84739 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.04315 * 180.02562 * 8 7 6 36 36 H 0.96998 * 119.99702 * 359.97438 * 12 10 9 37 37 H 1.08998 * 109.47262 * 299.99984 * 13 12 10 38 38 H 1.08998 * 109.47244 * 60.00019 * 13 12 10 39 39 H 1.09003 * 112.84946 * 45.33266 * 14 13 12 40 40 H 1.09000 * 113.61476 * 334.56535 * 15 14 13 41 41 H 1.08998 * 113.61821 * 105.47215 * 15 14 13 42 42 H 1.08998 * 113.74732 * 139.94163 * 16 15 14 43 43 H 0.96993 * 120.00053 * 72.49326 * 17 16 15 44 44 H 0.96997 * 120.00594 * 179.97438 * 21 20 18 45 45 H 1.08998 * 113.61782 * 254.53513 * 26 14 13 46 46 H 1.09005 * 113.61019 * 25.43823 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.1990 0.4272 -0.0005 6 6 5.5674 0.6096 -0.0005 7 6 6.1042 1.8869 0.0000 8 6 5.2768 2.9887 -0.0001 9 6 3.8902 2.8185 -0.0011 10 6 2.9985 3.9939 -0.0017 11 8 1.7921 3.8418 -0.0031 12 7 3.5210 5.2363 -0.0018 13 6 2.6355 6.4034 -0.0029 14 6 3.4764 7.6816 -0.0021 15 6 3.8984 8.1404 1.4037 16 6 3.6169 9.5784 0.9312 17 7 4.7763 10.2298 0.3165 18 6 5.4391 11.2228 0.9872 19 1 5.1074 11.5255 1.9694 20 6 6.5379 11.8396 0.4050 21 7 6.9432 11.4697 -0.7914 22 14 7.4426 13.1937 1.3201 23 1 6.7936 13.4205 2.6364 24 1 8.8569 12.7914 1.5277 25 1 7.3961 14.4460 0.5234 26 6 2.6402 8.9692 -0.0885 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7881 -0.5716 -0.0005 33 1 6.2233 -0.2484 -0.0050 34 1 7.1760 2.0195 0.0004 35 1 5.6997 3.9824 -0.0001 36 1 4.4834 5.3576 -0.0010 37 1 2.0073 6.3819 -0.8934 38 1 2.0058 6.3826 0.8865 39 1 4.2998 7.6470 -0.7155 40 1 3.2279 7.8012 2.1933 41 1 4.9481 7.9512 1.6281 42 1 3.1314 10.2004 1.6831 43 1 5.0744 9.9577 -0.5655 44 1 7.7108 11.9009 -1.1984 45 1 2.6756 9.4480 -1.0671 46 1 1.6251 8.8570 0.2924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091350112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = -19.553925 kcal Electronic energy + Delta-G solvation = -25785.145587 eV Core-core repulsion = 22061.952034 eV Total energy + Delta-G solvation = -3723.193553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74753 -39.28943 -38.32787 -37.57775 -34.56236 -33.21070 -32.28787 -31.51727 -30.09134 -29.78649 -27.28859 -25.03625 -24.48576 -24.00512 -23.27441 -21.95169 -21.58947 -20.43771 -18.87893 -18.28686 -17.45274 -17.09490 -16.42436 -16.40666 -15.47850 -15.26058 -15.16825 -14.91308 -14.78571 -14.14150 -13.99722 -13.67152 -13.62057 -13.34170 -13.05469 -12.88223 -12.87184 -12.29809 -12.26943 -12.15592 -11.89640 -11.87577 -11.35900 -11.33196 -11.05150 -11.02687 -10.85849 -10.46042 -10.14525 -10.03821 -9.69416 -9.68811 -9.41871 -9.36101 -8.91613 -8.85445 -8.46987 -6.99863 -5.81118 -3.09966 0.64126 1.11676 2.85868 2.90460 3.25784 3.41197 3.47288 3.49353 3.69315 4.41206 4.44813 4.55599 4.60429 4.69292 4.76121 4.88024 4.93880 5.03044 5.10907 5.12454 5.14539 5.27218 5.40540 5.45795 5.50568 5.51285 5.66729 5.74562 5.77667 5.87850 5.90760 5.96328 6.02771 6.13675 6.15241 6.24502 6.39431 6.39858 6.51187 6.62868 6.76469 6.93048 7.06177 7.14231 7.63214 7.69450 8.35628 8.38137 9.48870 10.06722 10.41012 11.41378 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.002332 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.790990 B =12004.863316 C =13072.649728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.279 6.279 4 C 0.185 3.815 5 C -0.224 4.224 6 C -0.055 4.055 7 C -0.167 4.167 8 C -0.046 4.046 9 C -0.171 4.171 10 C 0.556 3.444 11 O -0.525 6.525 12 N -0.723 5.723 13 C 0.133 3.867 14 C -0.120 4.120 15 C -0.168 4.168 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.147 4.147 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 -25.778 0.931 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.190 6.190 4 C 0.137 3.863 5 C -0.243 4.243 6 C -0.073 4.073 7 C -0.185 4.185 8 C -0.065 4.065 9 C -0.175 4.175 10 C 0.343 3.657 11 O -0.402 6.402 12 N -0.376 5.376 13 C 0.010 3.990 14 C -0.139 4.139 15 C -0.209 4.209 16 C 0.055 3.945 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.187 4.187 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.816 -25.554 1.043 26.743 hybrid contribution 1.386 0.332 0.107 1.429 sum -6.430 -25.222 1.150 26.054 Atomic orbital electron populations 1.21737 0.92474 1.02479 1.04043 1.22878 0.96454 0.82267 1.01106 1.86389 1.17745 1.28349 1.86513 1.19014 0.83148 0.92620 0.91515 1.21238 0.94402 0.97955 1.10665 1.21125 0.94248 0.97567 0.94390 1.21023 1.00328 0.92124 1.05071 1.21264 0.91212 0.99806 0.94183 1.19436 0.93679 0.91460 1.12939 1.17980 0.87871 0.82786 0.77073 1.90805 1.14382 1.85971 1.49059 1.45970 1.10692 1.05472 1.75429 1.21450 0.92477 0.83311 1.01719 1.22712 0.98955 0.92422 0.99774 1.23909 1.01134 1.01346 0.94536 1.21099 0.88651 0.90954 0.93816 1.42181 1.30863 1.41640 1.19768 1.19340 1.07706 1.10424 0.99685 0.90938 1.24767 0.99034 1.00317 0.96866 1.69670 1.28185 1.44875 1.15347 0.86099 0.79538 0.81664 0.78788 1.20498 1.21862 1.21853 1.23435 0.98276 0.95562 1.01441 0.91317 0.91324 0.90545 0.92088 0.92087 0.84973 0.85368 0.85105 0.84709 0.76569 0.91851 0.91601 0.88938 0.91398 0.91531 0.91968 0.78118 0.93509 0.91328 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.15 0.38 -0.73 16 2 C 0.05 0.40 5.46 37.15 0.20 0.61 16 3 O -0.28 -3.62 8.21 -40.55 -0.33 -3.96 16 4 C 0.19 2.26 6.70 -38.70 -0.26 2.00 16 5 C -0.22 -2.03 9.03 -39.47 -0.36 -2.38 16 6 C -0.05 -0.43 10.03 -39.53 -0.40 -0.83 16 7 C -0.17 -1.42 10.02 -39.63 -0.40 -1.81 16 8 C -0.05 -0.46 9.53 -39.20 -0.37 -0.84 16 9 C -0.17 -2.19 5.89 -104.85 -0.62 -2.81 16 10 C 0.56 8.41 7.76 -12.47 -0.10 8.32 16 11 O -0.53 -9.69 15.16 -16.59 -0.25 -9.94 16 12 N -0.72 -9.73 5.51 -61.35 -0.34 -10.06 16 13 C 0.13 1.90 5.50 -4.04 -0.02 1.87 16 14 C -0.12 -1.83 3.62 -89.81 -0.33 -2.15 16 15 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 16 C 0.17 3.26 4.57 -67.02 -0.31 2.96 16 17 N -0.71 -17.33 5.31 -52.55 -0.28 -17.61 16 18 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.14 6.40 -52.49 -0.34 0.80 16 36 H 0.40 4.61 6.50 -40.82 -0.27 4.34 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.38 9.98 7.90 -40.82 -0.32 9.66 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -33.49 380.48 -10.02 -43.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.06 Total: 10.83 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.20 Total: -8.62 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.11 Total: -54.68 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.58 Total: -13.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.49 -10.02 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091350112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.958 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds