Wall clock time and date at job start Tue Mar 31 2020 12:25:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.45207 * 109.46790 * 2 1
4 4 C 1.34749 * 116.99942 * 180.02562 * 3 2 1
5 5 O 1.21524 * 120.00108 * 0.02562 * 4 3 2
6 6 C 1.47394 * 120.00264 * 180.02562 * 4 3 2
7 7 C 1.39660 * 120.47916 * 359.97438 * 6 4 3
8 8 N 1.31636 * 120.50882 * 180.02562 * 7 6 4
9 9 C 1.32643 * 121.64411 * 0.02562 * 8 7 6
10 10 N 1.38432 * 119.53410 * 179.97438 * 9 8 7
11 11 C 1.46499 * 119.99703 * 0.02562 * 10 9 8
12 12 H 1.09005 * 109.41458 * 324.85629 * 11 10 9
13 13 C 1.52959 * 109.35800 * 84.68377 * 11 10 9
14 14 C 1.53652 * 109.32660 * 183.79486 * 13 11 10
15 15 C 1.51269 * 108.31082 * 305.14051 * 14 13 11
16 16 C 1.37885 * 120.84892 * 231.38027 * 15 14 13
17 17 N 1.31516 * 119.99913 * 180.27944 * 16 15 14
18 18 Si 1.86798 * 119.99766 * 0.28022 * 16 15 14
19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 15
20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 15
21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 15
22 22 C 1.51267 * 118.30147 * 51.65779 * 15 14 13
23 23 C 1.52964 * 109.41151 * 204.99972 * 11 10 9
24 24 C 1.39374 * 120.93156 * 0.25705 * 9 8 7
25 25 C 1.50702 * 120.30557 * 179.72100 * 24 9 8
26 26 C 1.36868 * 119.38953 * 359.48666 * 24 9 8
27 27 H 1.09001 * 109.46947 * 299.99539 * 1 2 3
28 28 H 1.09000 * 109.47514 * 59.99904 * 1 2 3
29 29 H 1.09007 * 109.46868 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46947 * 240.00461 * 2 1 3
31 31 H 1.08993 * 109.47143 * 120.00123 * 2 1 3
32 32 H 1.07997 * 119.74639 * 0.02562 * 7 6 4
33 33 H 0.97002 * 120.00140 * 180.02562 * 10 9 8
34 34 H 1.09001 * 109.47998 * 303.65081 * 13 11 10
35 35 H 1.08999 * 109.47702 * 63.68445 * 13 11 10
36 36 H 1.09007 * 109.69461 * 185.52287 * 14 13 11
37 37 H 1.09007 * 109.78671 * 64.80813 * 14 13 11
38 38 H 0.97001 * 119.99646 * 179.97438 * 17 16 15
39 39 H 1.09001 * 109.63015 * 68.11448 * 22 15 14
40 40 H 1.09007 * 109.62669 * 188.68873 * 22 15 14
41 41 H 1.09002 * 109.47682 * 56.38794 * 23 11 10
42 42 H 1.08997 * 109.48097 * 296.34924 * 23 11 10
43 43 H 1.09000 * 109.47374 * 89.99595 * 25 24 9
44 44 H 1.09000 * 109.47702 * 210.00062 * 25 24 9
45 45 H 1.09004 * 109.47249 * 330.00038 * 25 24 9
46 46 H 1.07998 * 120.75765 * 180.25230 * 26 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3691 0.0000
4 6 3.3498 1.5457 -0.0005
5 8 4.0902 0.5820 -0.0015
6 6 3.9132 2.9077 0.0000
7 6 3.0718 4.0223 0.0005
8 7 3.5743 5.2390 0.0005
9 6 4.8836 5.4511 -0.0005
10 7 5.3646 6.7492 -0.0011
11 6 4.4294 7.8768 0.0001
12 1 3.5503 7.6191 -0.5907
13 6 4.0045 8.1817 1.4375
14 6 2.9519 9.3011 1.4301
15 6 3.5243 10.4867 0.6852
16 6 3.5120 11.7466 1.2453
17 7 4.0092 12.7666 0.5805
18 14 2.7892 12.0046 2.9483
19 1 2.8966 13.4384 3.3197
20 1 1.3607 11.5989 2.9465
21 1 3.5362 11.1815 3.9330
22 6 4.1047 10.2559 -0.6925
23 6 5.1105 9.1029 -0.6104
24 6 5.7820 4.3856 -0.0070
25 6 7.2669 4.6429 -0.0144
26 6 5.3032 3.1034 -0.0017
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 2.0005 3.8851 0.0010
33 1 6.3208 6.9122 -0.0022
34 1 3.5776 7.2857 1.8881
35 1 4.8734 8.4999 2.0136
36 1 2.7168 9.5910 2.4543
37 1 2.0485 8.9547 0.9281
38 1 4.0002 13.6530 0.9744
39 1 3.3061 9.9964 -1.3875
40 1 4.6106 11.1595 -1.0327
41 1 5.4674 8.8597 -1.6112
42 1 5.9532 9.3992 0.0142
43 1 7.6303 4.7033 1.0114
44 1 7.7742 3.8289 -0.5322
45 1 7.4703 5.5827 -0.5278
46 1 5.9795 2.2613 -0.0024
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001157050469.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:25:59
Heat of formation + Delta-G solvation = -86.347347 kcal
Electronic energy + Delta-G solvation = -26392.028722 eV
Core-core repulsion = 22665.938789 eV
Total energy + Delta-G solvation = -3726.089933 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.88229 -40.92886 -38.99666 -37.60531 -36.11493 -34.73646 -33.79674 -32.70291
-31.69357 -31.26177 -28.86988 -28.14038 -25.55591 -24.33582 -23.68027 -23.31258
-22.93781 -21.74592 -21.13922 -19.07170 -18.85431 -17.91783 -17.67313 -17.53987
-17.37502 -16.42000 -15.96677 -15.76400 -15.16905 -15.08587 -14.91565 -14.80249
-14.55379 -14.21372 -14.03578 -13.96489 -13.75311 -13.66676 -13.55835 -13.34053
-12.92111 -12.85647 -12.76270 -12.69057 -12.48780 -12.47034 -11.98275 -11.87503
-11.71788 -11.67044 -11.49682 -11.23754 -10.84676 -10.70607 -10.56060 -10.44322
-10.36173 -8.70252 -8.17097 -6.10342 -0.27219 0.33265 1.39344 1.41196
1.48439 1.55696 1.67854 2.18963 2.40832 2.86349 3.11580 3.45009
3.69543 3.90271 3.94983 3.99154 4.05169 4.09627 4.12805 4.23253
4.37420 4.40592 4.55570 4.65060 4.73028 4.80915 4.84014 4.92368
4.96425 4.97181 5.01510 5.08087 5.10938 5.15509 5.19583 5.24190
5.24824 5.30142 5.46109 5.55600 5.59448 5.64228 5.76686 5.83086
6.11610 6.34608 6.38959 6.72628 6.95395 7.19272 7.47664 8.93650
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.017464 B = 0.002871 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1602.949664 B = 9749.776253 C =10791.753196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.056 3.944
3 O -0.359 6.359
4 C 0.528 3.472
5 O -0.545 6.545
6 C -0.265 4.265
7 C 0.212 3.788
8 N -0.568 5.568
9 C 0.429 3.571
10 N -0.694 5.694
11 C 0.176 3.824
12 H 0.070 0.930
13 C -0.102 4.102
14 C -0.010 4.010
15 C -0.499 4.499
16 C 0.025 3.975
17 N -0.929 5.929
18 Si 0.939 3.061
19 H -0.294 1.294
20 H -0.269 1.269
21 H -0.267 1.267
22 C 0.010 3.990
23 C -0.104 4.104
24 C -0.215 4.215
25 C -0.101 4.101
26 C 0.024 3.976
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.101 0.899
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.181 0.819
33 H 0.417 0.583
34 H 0.046 0.954
35 H 0.045 0.955
36 H 0.024 0.976
37 H 0.021 0.979
38 H 0.263 0.737
39 H 0.000 1.000
40 H 0.031 0.969
41 H 0.056 0.944
42 H 0.052 0.948
43 H 0.079 0.921
44 H 0.087 0.913
45 H 0.070 0.930
46 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.639 -22.939 -0.954 22.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.018 4.018
3 O -0.275 6.275
4 C 0.376 3.624
5 O -0.438 6.438
6 C -0.272 4.272
7 C 0.050 3.950
8 N -0.286 5.286
9 C 0.190 3.810
10 N -0.323 5.323
11 C 0.071 3.929
12 H 0.088 0.912
13 C -0.141 4.141
14 C -0.048 4.048
15 C -0.518 4.518
16 C -0.173 4.173
17 N -0.569 5.569
18 Si 0.766 3.234
19 H -0.221 1.221
20 H -0.194 1.194
21 H -0.192 1.192
22 C -0.028 4.028
23 C -0.142 4.142
24 C -0.222 4.222
25 C -0.158 4.158
26 C -0.001 4.001
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.119 0.881
30 H 0.089 0.911
31 H 0.088 0.912
32 H 0.198 0.802
33 H 0.256 0.744
34 H 0.064 0.936
35 H 0.064 0.936
36 H 0.042 0.958
37 H 0.039 0.961
38 H 0.072 0.928
39 H 0.019 0.981
40 H 0.050 0.950
41 H 0.075 0.925
42 H 0.070 0.930
43 H 0.098 0.902
44 H 0.105 0.895
45 H 0.089 0.911
46 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 0.212 -22.122 -0.954 22.144
hybrid contribution 0.437 -0.061 0.794 0.908
sum 0.648 -22.183 -0.161 22.193
Atomic orbital electron populations
1.21838 0.90516 1.04382 1.03717 1.23298 0.96921 0.78877 1.02675
1.86552 1.23048 1.33937 1.83995 1.20858 0.80723 0.89278 0.71577
1.90790 1.60991 1.43198 1.48790 1.19744 0.95109 0.90978 1.21416
1.23082 1.00832 0.85061 0.85988 1.67468 1.12925 1.25358 1.22834
1.18784 0.89074 0.86283 0.86871 1.45074 1.09856 1.01689 1.75696
1.20655 0.91736 0.84134 0.96340 0.91185 1.21827 0.98889 0.97285
0.96124 1.19673 0.95174 0.94180 0.95764 1.20626 1.37191 0.92074
1.01902 1.25537 0.95610 0.95618 1.00553 1.69945 1.47149 1.00274
1.39512 0.85862 0.79729 0.76321 0.81470 1.22090 1.19423 1.19193
1.19281 0.94082 0.94417 0.95014 1.21725 0.98830 0.94845 0.98812
1.20044 0.98241 0.91555 1.12327 1.20663 0.88324 1.03442 1.03390
1.21106 0.93338 0.96942 0.88733 0.91378 0.91312 0.88079 0.91139
0.91200 0.80248 0.74378 0.93578 0.93584 0.95800 0.96073 0.92791
0.98134 0.95003 0.92534 0.92952 0.90221 0.89456 0.91094 0.82810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16
2 C 0.06 0.90 6.20 71.98 0.45 1.35 16
3 O -0.36 -7.81 9.49 -56.59 -0.54 -8.34 16
4 C 0.53 13.34 7.89 70.23 0.55 13.90 16
5 O -0.55 -15.80 16.20 19.76 0.32 -15.48 16
6 C -0.27 -6.61 5.89 -20.00 -0.12 -6.72 16
7 C 0.21 5.46 10.79 85.07 0.92 6.38 16
8 N -0.57 -17.24 9.16 -192.28 -1.76 -19.00 16
9 C 0.43 11.98 7.43 133.24 0.99 12.97 16
10 N -0.69 -19.60 5.10 -324.76 -1.66 -21.25 16
11 C 0.18 6.24 2.35 44.97 0.11 6.34 16
12 H 0.07 2.73 7.52 -2.38 -0.02 2.71 16
13 C -0.10 -3.97 5.53 30.80 0.17 -3.80 16
14 C -0.01 -0.44 5.62 30.25 0.17 -0.27 16
15 C -0.50 -25.65 5.50 -16.17 -0.09 -25.74 16
16 C 0.03 1.37 5.46 84.66 0.46 1.83 16
17 N -0.93 -53.60 12.73 21.45 0.27 -53.33 16
18 Si 0.94 43.26 26.80 68.60 1.84 45.09 16
19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
22 C 0.01 0.49 5.97 30.11 0.18 0.67 16
23 C -0.10 -3.98 5.40 30.66 0.17 -3.81 16
24 C -0.21 -4.86 5.88 -19.91 -0.12 -4.98 16
25 C -0.10 -1.60 9.56 71.24 0.68 -0.91 16
26 C 0.02 0.54 9.31 22.47 0.21 0.75 16
27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16
30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
32 H 0.18 3.91 7.61 -2.91 -0.02 3.89 16
33 H 0.42 9.71 6.54 -92.71 -0.61 9.10 16
34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16
36 H 0.02 1.06 5.17 -2.38 -0.01 1.05 16
37 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16
38 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16
39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
40 H 0.03 1.70 7.07 -2.38 -0.02 1.69 16
41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16
43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
44 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16
45 H 0.07 1.05 6.55 -2.38 -0.02 1.03 16
46 H 0.15 3.07 7.72 -2.91 -0.02 3.04 16
Total: -1.00 -63.79 372.15 4.33 -59.45
By element:
Atomic # 1 Polarization: 15.35 SS G_CDS: 0.38 Total: 15.73 kcal
Atomic # 6 Polarization: -8.34 SS G_CDS: 5.47 Total: -2.87 kcal
Atomic # 7 Polarization: -90.44 SS G_CDS: -3.14 Total: -93.58 kcal
Atomic # 8 Polarization: -23.61 SS G_CDS: -0.22 Total: -23.83 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 1.84 Total: 45.09 kcal
Total: -63.79 4.33 -59.45 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001157050469.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.893 kcal
(2) G-P(sol) polarization free energy of solvation -63.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds