Wall clock time and date at job start Tue Mar 31 2020 13:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36930 * 119.99742 * 2 1 4 4 H 1.08003 * 120.00127 * 142.97447 * 3 2 1 5 5 C 1.38815 * 120.00448 * 322.69889 * 3 2 1 6 6 N 1.31617 * 120.00221 * 167.76062 * 5 3 2 7 7 Si 1.86800 * 119.99685 * 347.76549 * 5 3 2 8 8 H 1.48498 * 109.47329 * 90.98842 * 7 5 3 9 9 H 1.48504 * 109.46713 * 210.99322 * 7 5 3 10 10 H 1.48498 * 109.46847 * 330.98759 * 7 5 3 11 11 C 1.46501 * 120.00149 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46849 * 265.29339 * 11 2 1 13 13 H 1.09003 * 109.58591 * 295.06038 * 12 11 2 14 14 C 1.53195 * 109.58515 * 55.48845 * 12 11 2 15 15 C 1.53039 * 109.31122 * 174.42295 * 14 12 11 16 16 C 1.53042 * 109.53573 * 298.63525 * 15 14 12 17 17 C 1.53192 * 109.31549 * 61.36562 * 16 15 14 18 18 N 1.46917 * 108.77393 * 305.36408 * 17 16 15 19 19 C 1.34773 * 120.63174 * 233.58397 * 18 17 16 20 20 O 1.21779 * 120.00345 * 185.26520 * 19 18 17 21 21 C 1.41551 * 119.99842 * 5.26944 * 19 18 17 22 22 C 1.35633 * 119.99758 * 188.05621 * 21 19 18 23 23 C 1.41606 * 120.00039 * 25.98059 * 22 21 19 24 24 C 1.37946 * 126.10063 * 186.42962 * 23 22 21 25 25 C 1.40323 * 106.52628 * 179.84748 * 24 23 22 26 26 C 1.35148 * 107.20220 * 0.41008 * 25 24 23 27 27 O 1.34018 * 109.03545 * 359.74310 * 26 25 24 28 28 H 1.08997 * 109.47096 * 85.13426 * 1 2 3 29 29 H 1.09008 * 109.46741 * 205.12921 * 1 2 3 30 30 H 1.08991 * 109.47019 * 325.12894 * 1 2 3 31 31 H 0.96999 * 119.99987 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47075 * 25.29561 * 11 2 1 33 33 H 1.09004 * 109.47368 * 145.29486 * 11 2 1 34 34 H 1.09005 * 109.49470 * 294.37039 * 14 12 11 35 35 H 1.08995 * 109.49772 * 54.47200 * 14 12 11 36 36 H 1.08996 * 109.46049 * 178.61688 * 15 14 12 37 37 H 1.09005 * 109.45279 * 58.64409 * 15 14 12 38 38 H 1.09000 * 109.49748 * 301.41291 * 16 15 14 39 39 H 1.09002 * 109.49718 * 181.31883 * 16 15 14 40 40 H 1.09000 * 109.58390 * 185.57571 * 17 16 15 41 41 H 1.09004 * 109.70016 * 65.22274 * 17 16 15 42 42 H 1.08000 * 120.00238 * 8.05861 * 21 19 18 43 43 H 1.08001 * 119.99965 * 205.97341 * 22 21 19 44 44 H 1.08001 * 126.74260 * 359.97438 * 24 23 22 45 45 H 1.08001 * 126.39407 * 180.15515 * 25 24 23 46 46 H 1.07998 * 125.47724 * 179.76069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0663 1.2802 0.5632 5 6 1.6685 2.2651 -0.7285 6 7 2.1796 3.4639 -0.5441 7 14 0.2956 2.0161 -1.9704 8 1 -1.0163 2.2246 -1.3066 9 1 0.4494 2.9907 -3.0803 10 1 0.3625 0.6349 -2.5118 11 6 2.1976 -1.2687 -0.0006 12 6 2.5550 -1.6518 1.4369 13 1 3.2486 -0.9186 1.8488 14 6 1.2824 -1.6943 2.2887 15 6 1.6264 -2.2118 3.6872 16 6 2.1863 -3.6324 3.5838 17 6 3.4691 -3.6118 2.7468 18 7 3.1786 -2.9821 1.4516 19 6 3.4788 -3.6125 0.2988 20 8 3.3221 -3.0422 -0.7657 21 6 3.9760 -4.9375 0.3255 22 6 4.4314 -5.5140 -0.8147 23 6 4.9286 -4.7067 -1.8665 24 6 5.3042 -5.1449 -3.1195 25 6 5.7271 -4.0105 -3.8289 26 6 5.6049 -2.9512 -2.9985 27 8 5.1250 -3.3726 -1.8202 28 1 -0.3633 0.0872 -1.0239 29 1 -0.3633 -0.9305 0.4364 30 1 -0.3633 0.8431 0.5875 31 1 1.8432 4.2181 -1.0529 32 1 1.5746 -2.0478 -0.4400 33 1 3.1109 -1.1607 -0.5856 34 1 0.8621 -0.6915 2.3650 35 1 0.5553 -2.3597 1.8233 36 1 0.7270 -2.2198 4.3028 37 1 2.3722 -1.5599 4.1422 38 1 1.4506 -4.2795 3.1062 39 1 2.4092 -4.0091 4.5821 40 1 3.8175 -4.6322 2.5871 41 1 4.2380 -3.0403 3.2668 42 1 3.9928 -5.4895 1.2536 43 1 4.4148 -6.5887 -0.9203 44 1 5.2763 -6.1612 -3.4838 45 1 6.0872 -3.9886 -4.8468 46 1 5.8537 -1.9296 -3.2449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157458396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:33 Heat of formation + Delta-G solvation = 60.123183 kcal Electronic energy + Delta-G solvation = -28241.558947 eV Core-core repulsion = 24521.820452 eV Total energy + Delta-G solvation = -3719.738494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28406 -40.26753 -37.34736 -35.66496 -34.06034 -32.76757 -32.62853 -31.88289 -30.59129 -28.69970 -27.04503 -25.69039 -24.67788 -23.82836 -22.29052 -21.56859 -21.01908 -20.37261 -19.74170 -18.53799 -17.37268 -16.78577 -16.25949 -15.77738 -15.49702 -15.16273 -15.09607 -14.48668 -14.33182 -13.99929 -13.77704 -13.49523 -13.22769 -13.13114 -12.88890 -12.81969 -12.64106 -12.26576 -12.20940 -12.09656 -11.97817 -11.71111 -11.22903 -10.92116 -10.78023 -10.53053 -10.31532 -10.26562 -10.21181 -10.04108 -9.80689 -9.68976 -9.45222 -8.71467 -8.47069 -8.13385 -7.72965 -6.61458 -5.84068 -3.30556 0.44173 2.37345 2.84149 3.25392 3.39603 3.44481 3.56710 3.64487 3.66397 4.65963 4.67014 4.79565 4.91548 4.97021 5.05433 5.09524 5.13719 5.29523 5.34731 5.38277 5.52336 5.52997 5.60864 5.64795 5.78534 5.85278 5.92602 5.96726 5.99689 6.06406 6.13775 6.18749 6.32498 6.35593 6.43709 6.46487 6.54244 6.59829 6.68100 6.81032 6.91218 7.01481 7.35577 7.42602 7.81242 8.21128 8.47737 8.65617 9.14826 9.86590 10.27276 11.32499 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.005623 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.935822 B = 4978.064091 C = 7083.207658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.614 5.614 3 C -0.258 4.258 4 H 0.079 0.921 5 C 0.029 3.971 6 N -0.916 5.916 7 Si 0.899 3.101 8 H -0.290 1.290 9 H -0.307 1.307 10 H -0.271 1.271 11 C 0.167 3.833 12 C 0.127 3.873 13 H 0.069 0.931 14 C -0.122 4.122 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.534 3.466 20 O -0.508 6.508 21 C -0.227 4.227 22 C 0.005 3.995 23 C -0.009 4.009 24 C -0.173 4.173 25 C -0.238 4.238 26 C -0.003 4.003 27 O -0.117 6.117 28 H 0.007 0.993 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.261 0.739 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -21.214 4.034 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.339 5.339 3 C -0.387 4.387 4 H 0.096 0.904 5 C -0.170 4.170 6 N -0.559 5.559 7 Si 0.730 3.270 8 H -0.218 1.218 9 H -0.236 1.236 10 H -0.197 1.197 11 C 0.042 3.958 12 C 0.022 3.978 13 H 0.087 0.913 14 C -0.160 4.160 15 C -0.158 4.158 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.337 5.337 19 C 0.326 3.674 20 O -0.386 6.386 21 C -0.247 4.247 22 C -0.014 4.014 23 C -0.060 4.060 24 C -0.193 4.193 25 C -0.257 4.257 26 C -0.074 4.074 27 O -0.009 6.009 28 H 0.025 0.975 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.798 -20.538 3.693 21.412 hybrid contribution -0.848 -0.096 -0.686 1.095 sum 3.951 -20.634 3.007 21.223 Atomic orbital electron populations 1.21475 0.85733 0.99183 0.97965 1.44369 1.00210 1.02819 1.86474 1.18813 1.08226 0.87302 1.24354 0.90372 1.25468 0.98267 0.95742 0.97516 1.69791 1.44306 0.98958 1.42878 0.86740 0.81774 0.76584 0.81860 1.21760 1.23588 1.19680 1.21384 0.97490 0.86392 0.90575 1.22205 0.93212 0.81139 1.01223 0.91277 1.21922 0.97757 1.02277 0.94033 1.21547 1.00646 0.95658 0.97963 1.21916 0.97524 0.98166 0.99550 1.21737 0.97156 0.98226 0.84536 1.48224 1.61300 1.19105 1.05114 1.17073 0.79959 0.86176 0.84205 1.90964 1.52513 1.65442 1.29646 1.22375 1.05642 0.97841 0.98853 1.20567 0.92859 0.98166 0.89854 1.19784 1.07322 0.82048 0.96811 1.22245 1.03944 0.99992 0.93092 1.21657 1.09749 0.92626 1.01626 1.24457 0.99008 1.00196 0.83771 1.84571 1.60964 1.21639 1.33693 0.97508 0.94793 0.93590 0.92961 0.93687 0.90287 0.89677 0.92667 0.92270 0.91947 0.91783 0.91329 0.90093 0.91574 0.84642 0.82972 0.83480 0.83638 0.78307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 7.42 59.85 0.44 2.79 16 2 N -0.61 -15.46 2.08 -181.12 -0.38 -15.84 16 3 C -0.26 -7.51 9.98 -15.06 -0.15 -7.66 16 4 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 5 C 0.03 0.87 5.41 -17.43 -0.09 0.78 16 6 N -0.92 -29.00 13.97 55.49 0.78 -28.23 16 7 Si 0.90 24.12 24.34 -169.99 -4.14 19.99 16 8 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 9 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 10 H -0.27 -7.32 6.40 56.52 0.36 -6.96 16 11 C 0.17 3.76 3.61 -4.04 -0.01 3.75 16 12 C 0.13 2.34 3.22 -67.60 -0.22 2.13 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.12 -1.99 4.06 -26.61 -0.11 -2.10 16 15 C -0.12 -1.52 5.88 -26.69 -0.16 -1.68 16 16 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 17 C 0.11 1.18 6.33 -3.72 -0.02 1.15 16 18 N -0.60 -9.24 2.97 -168.62 -0.50 -9.75 16 19 C 0.53 8.66 6.82 -15.00 -0.10 8.56 16 20 O -0.51 -10.14 8.22 -20.09 -0.17 -10.30 16 21 C -0.23 -2.70 9.13 -39.25 -0.36 -3.06 16 22 C 0.01 0.06 9.83 -39.23 -0.39 -0.33 16 23 C -0.01 -0.13 6.11 -38.40 -0.23 -0.36 16 24 C -0.17 -2.11 10.90 -38.90 -0.42 -2.54 16 25 C -0.24 -2.98 10.87 -39.90 -0.43 -3.41 16 26 C 0.00 -0.04 12.06 29.63 0.36 0.32 16 27 O -0.12 -1.96 6.93 -20.49 -0.14 -2.10 16 28 H 0.01 0.18 4.27 -51.93 -0.22 -0.04 16 29 H 0.03 0.67 6.70 -51.92 -0.35 0.33 16 30 H 0.05 1.08 7.64 -51.93 -0.40 0.69 16 31 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 32 H 0.04 1.03 6.88 -51.93 -0.36 0.68 16 33 H 0.08 1.99 6.44 -51.93 -0.33 1.66 16 34 H 0.08 1.58 6.96 -51.93 -0.36 1.22 16 35 H 0.05 0.91 7.69 -51.93 -0.40 0.51 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.68 5.32 -51.93 -0.28 0.40 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.14 1.14 5.83 -52.49 -0.31 0.83 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -35.36 352.03 -8.13 -43.49 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.83 Total: 0.62 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.06 Total: -3.18 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.10 Total: -53.81 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.31 Total: -12.41 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.14 Total: 19.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.36 -8.13 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157458396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.615 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds