Wall clock time and date at job start Tue Mar 31 2020 12:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47012 * 2 1 4 4 C 1.34226 * 117.00174 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00281 * 179.97438 * 4 3 2 7 7 N 1.46496 * 109.47370 * 179.97438 * 6 4 3 8 8 C 1.39087 * 119.99517 * 89.99893 * 7 6 4 9 9 C 1.38741 * 119.66153 * 5.00318 * 8 7 6 10 10 C 1.40767 * 118.67152 * 180.02562 * 9 8 7 11 11 C 1.41559 * 120.99550 * 179.72725 * 10 9 8 12 12 H 1.08004 * 120.00030 * 336.15217 * 11 10 9 13 13 C 1.40022 * 120.00366 * 156.14996 * 11 10 9 14 14 N 1.30746 * 119.99668 * 343.27705 * 13 11 10 15 15 Si 1.86804 * 120.00113 * 163.27557 * 13 11 10 16 16 H 1.48495 * 109.47128 * 60.00000 * 15 13 11 17 17 H 1.48499 * 109.47141 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46893 * 300.00084 * 15 13 11 19 19 C 1.41191 * 118.01642 * 0.02562 * 10 9 8 20 20 C 1.36555 * 119.14020 * 359.97438 * 19 10 9 21 21 N 1.32090 * 121.27331 * 359.97438 * 20 19 10 22 22 C 1.46497 * 120.00221 * 270.00411 * 7 6 4 23 23 C 1.54268 * 110.02774 * 237.16344 * 22 7 6 24 24 C 1.54891 * 104.19362 * 217.10510 * 23 22 7 25 25 C 1.54885 * 102.74964 * 37.94245 * 24 23 22 26 26 C 1.53877 * 110.03399 * 119.99921 * 22 7 6 27 27 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47184 * 300.00074 * 1 2 3 29 29 H 1.08996 * 109.47219 * 60.00318 * 1 2 3 30 30 H 1.08993 * 109.46992 * 239.99806 * 2 1 3 31 31 H 1.08996 * 109.47219 * 119.99682 * 2 1 3 32 32 H 1.08997 * 109.46767 * 59.99911 * 6 4 3 33 33 H 1.08999 * 109.47017 * 300.00470 * 6 4 3 34 34 H 1.08000 * 120.66307 * 0.04097 * 9 8 7 35 35 H 0.97006 * 119.99881 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.42386 * 179.97438 * 19 10 9 37 37 H 1.08004 * 119.36063 * 180.02562 * 20 19 10 38 38 H 1.08995 * 110.01877 * 358.60158 * 22 7 6 39 39 H 1.08997 * 110.48945 * 335.78633 * 23 22 7 40 40 H 1.09006 * 110.48705 * 98.43007 * 23 22 7 41 41 H 1.09009 * 110.75798 * 279.62936 * 24 23 22 42 42 H 1.08995 * 110.91571 * 156.33588 * 24 23 22 43 43 H 1.08999 * 110.48680 * 203.37555 * 25 24 23 44 44 H 1.09006 * 110.48316 * 80.73902 * 25 24 23 45 45 H 1.08997 * 110.03045 * 238.56855 * 26 22 7 46 46 H 1.09005 * 110.03201 * 359.97438 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3836 2.8609 -0.0010 8 6 6.0781 2.8240 -1.2056 9 6 5.3877 2.9648 -2.4007 10 6 6.1112 2.9237 -3.6076 11 6 5.4558 3.0565 -4.8553 12 1 4.4081 2.8096 -4.9440 13 6 6.1658 3.5080 -5.9745 14 7 7.3158 4.1106 -5.8197 15 14 5.4701 3.2493 -7.6887 16 1 4.1561 3.9324 -7.7979 17 1 6.4068 3.8134 -8.6935 18 1 5.2945 1.7959 -7.9375 19 6 7.5092 2.7396 -3.5367 20 6 8.1017 2.6102 -2.3132 21 7 7.3925 2.6546 -1.1998 22 6 6.1151 2.8231 1.2677 23 6 7.1223 3.9899 1.3318 24 6 8.3543 3.3889 2.0530 25 6 8.4164 1.9504 1.4823 26 6 6.9379 1.5264 1.3633 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5850 3.4699 0.8888 33 1 3.5843 3.4694 -0.8911 34 1 4.3166 3.1035 -2.4051 35 1 7.8075 4.4237 -6.5951 36 1 8.1022 2.7017 -4.4385 37 1 9.1710 2.4696 -2.2549 38 1 5.4173 2.8850 2.1027 39 1 7.3905 4.3180 0.3276 40 1 6.7099 4.8186 1.9075 41 1 8.1993 3.3701 3.1319 42 1 9.2594 3.9427 1.8040 43 1 8.9485 1.2907 2.1677 44 1 8.8937 1.9491 0.5023 45 1 6.6400 0.9593 2.2452 46 1 6.7927 0.9249 0.4659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157882742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:59 Heat of formation + Delta-G solvation = -63.294823 kcal Electronic energy + Delta-G solvation = -27685.653010 eV Core-core repulsion = 23960.562709 eV Total energy + Delta-G solvation = -3725.090301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62333 -40.60320 -38.79775 -37.64428 -36.13754 -35.54004 -32.73171 -32.49603 -30.77022 -29.81441 -29.38451 -27.76777 -26.79595 -24.28824 -23.21142 -23.02981 -21.88293 -21.40465 -20.75619 -18.99036 -18.76324 -17.82179 -17.74533 -17.35186 -16.95254 -16.60902 -16.00465 -15.89774 -15.42286 -15.29919 -15.07270 -14.79847 -14.39115 -14.26761 -14.14535 -13.70677 -13.62306 -13.23875 -13.15267 -12.91140 -12.77734 -12.75569 -12.61585 -12.48776 -12.22447 -12.00864 -11.81209 -11.79932 -11.72337 -11.55246 -11.51792 -11.37756 -11.28396 -11.14630 -10.38162 -9.85666 -9.62650 -8.67957 -8.16302 -6.52478 1.00189 1.14232 1.23703 1.37194 1.48716 1.54460 1.70950 2.17997 2.31621 2.83865 3.76124 3.83244 3.85753 3.90575 3.98899 4.00433 4.10089 4.21757 4.29104 4.33229 4.38838 4.52071 4.72595 4.77130 4.82285 4.84180 4.88245 4.92182 4.95720 5.01556 5.06058 5.09307 5.14400 5.22089 5.27727 5.29937 5.36983 5.47389 5.54442 5.60086 5.64536 5.81004 5.90560 6.10097 6.34477 6.48769 6.78234 6.82938 6.88743 7.01896 7.91566 8.28420 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009088 B = 0.005269 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.368796 B = 5312.629132 C = 7878.394348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.436 3.564 5 O -0.530 6.530 6 C 0.138 3.862 7 N -0.598 5.598 8 C 0.408 3.592 9 C -0.356 4.356 10 C 0.129 3.871 11 C -0.493 4.493 12 H 0.074 0.926 13 C 0.042 3.958 14 N -0.812 5.812 15 Si 0.983 3.017 16 H -0.257 1.257 17 H -0.264 1.264 18 H -0.264 1.264 19 C -0.267 4.267 20 C 0.112 3.888 21 N -0.586 5.586 22 C 0.164 3.836 23 C -0.124 4.124 24 C -0.105 4.105 25 C -0.110 4.110 26 C -0.111 4.111 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.290 0.710 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -1.597 12.478 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.277 3.723 5 O -0.418 6.418 6 C 0.012 3.988 7 N -0.313 5.313 8 C 0.178 3.822 9 C -0.382 4.382 10 C 0.121 3.879 11 C -0.524 4.524 12 H 0.092 0.908 13 C -0.175 4.175 14 N -0.437 5.437 15 Si 0.803 3.197 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.188 1.188 19 C -0.291 4.291 20 C -0.039 4.039 21 N -0.308 5.308 22 C 0.061 3.939 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.150 4.150 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.156 0.844 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.203 -1.872 13.277 15.221 hybrid contribution -0.410 -0.473 -2.127 2.217 sum -7.613 -2.345 11.150 13.703 Atomic orbital electron populations 1.21801 0.89935 1.04305 1.03872 1.23208 0.97348 0.79728 1.01778 1.86509 1.24059 1.33291 1.83951 1.25416 0.80630 0.94590 0.71617 1.90661 1.61193 1.44154 1.45786 1.21125 0.80303 0.89235 1.08146 1.46168 1.02579 1.79710 1.02890 1.17974 0.89015 0.90459 0.84776 1.21293 0.99122 1.25669 0.92138 1.17922 0.92370 0.84863 0.92747 1.19775 0.97754 1.41042 0.93828 0.90794 1.26770 0.94446 0.91173 1.05160 1.69841 1.13754 1.25617 1.34534 0.85249 0.79336 0.79670 0.75442 1.18112 1.18802 1.18836 1.21714 0.96180 1.13313 0.97941 1.21759 0.98527 0.95582 0.88009 1.67127 1.05631 1.27719 1.30322 1.21654 0.93470 0.94911 0.83835 1.22623 0.95897 0.97047 1.00656 1.22287 0.97241 0.95322 0.99424 1.22184 0.95598 0.96507 1.00471 1.22220 0.96163 0.97075 0.99544 0.88353 0.90514 0.91559 0.93019 0.91364 0.82576 0.86422 0.88259 0.89871 0.87578 0.84431 0.88183 0.92929 0.90711 0.90070 0.92141 0.92066 0.92537 0.92437 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 2 C 0.05 1.27 6.19 71.98 0.45 1.71 16 3 O -0.36 -10.13 10.22 -51.38 -0.53 -10.66 16 4 C 0.44 14.34 8.03 71.24 0.57 14.91 16 5 O -0.53 -21.63 16.18 21.95 0.36 -21.27 16 6 C 0.14 4.06 5.82 85.63 0.50 4.55 16 7 N -0.60 -21.70 2.00 -680.40 -1.36 -23.06 16 8 C 0.41 18.78 6.21 132.90 0.83 19.61 16 9 C -0.36 -18.08 9.07 23.01 0.21 -17.87 16 10 C 0.13 7.19 5.60 -21.12 -0.12 7.08 16 11 C -0.49 -27.04 9.12 23.52 0.21 -26.83 16 12 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 13 C 0.04 2.11 5.20 85.29 0.44 2.55 16 14 N -0.81 -42.31 10.93 21.84 0.24 -42.07 16 15 Si 0.98 38.12 29.59 68.60 2.03 40.15 16 16 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 C -0.27 -14.48 8.75 22.60 0.20 -14.28 16 20 C 0.11 5.47 11.10 84.26 0.94 6.40 16 21 N -0.59 -27.33 5.00 -194.47 -0.97 -28.30 16 22 C 0.16 5.08 3.36 45.72 0.15 5.23 16 23 C -0.12 -3.68 6.06 31.67 0.19 -3.49 16 24 C -0.10 -2.75 6.91 31.88 0.22 -2.53 16 25 C -0.11 -3.38 6.35 31.67 0.20 -3.18 16 26 C -0.11 -3.75 5.75 31.32 0.18 -3.57 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.16 3.03 7.92 -2.39 -0.02 3.01 16 33 H 0.12 3.55 5.98 -2.39 -0.01 3.53 16 34 H 0.10 4.74 6.03 -2.91 -0.02 4.73 16 35 H 0.29 13.62 8.29 -92.70 -0.77 12.85 16 36 H 0.11 5.95 6.20 -2.91 -0.02 5.93 16 37 H 0.14 5.96 8.06 -2.91 -0.02 5.93 16 38 H 0.10 2.44 7.82 -2.39 -0.02 2.42 16 39 H 0.05 2.00 6.12 -2.39 -0.01 1.99 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 2.07 6.90 -2.38 -0.02 2.05 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.03 1.47 7.02 -2.38 -0.02 1.45 16 Total: -1.00 -67.98 368.68 6.65 -61.33 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.98 Total: 35.06 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.91 Total: -11.19 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -2.10 Total: -93.43 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.17 Total: -31.93 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -67.98 6.65 -61.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157882742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds