Wall clock time and date at job start Tue Mar 31 2020 12:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47022 * 2 1 4 4 C 1.34226 * 117.00172 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99709 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00006 * 179.97438 * 4 3 2 7 7 C 1.53005 * 112.85118 * 48.80828 * 6 4 3 8 8 N 1.46497 * 109.46989 * 309.66645 * 7 6 4 9 9 C 1.38090 * 120.00270 * 180.02562 * 8 7 6 10 10 N 1.32269 * 119.90026 * 359.72209 * 9 8 7 11 11 C 1.31971 * 121.86060 * 179.74955 * 10 9 8 12 12 C 1.50704 * 119.27188 * 180.27127 * 11 10 9 13 13 C 1.38674 * 121.45043 * 0.53629 * 11 10 9 14 14 C 1.38015 * 119.62787 * 359.73998 * 13 11 10 15 15 C 1.41003 * 118.27925 * 359.97438 * 14 13 11 16 16 C 1.41017 * 120.70675 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99873 * 204.67800 * 16 15 14 18 18 C 1.39953 * 119.99713 * 24.68102 * 16 15 14 19 19 N 1.30864 * 119.99794 * 14.64989 * 18 16 15 20 20 Si 1.86801 * 119.99767 * 194.64269 * 18 16 15 21 21 H 1.48502 * 109.46820 * 60.00454 * 20 18 16 22 22 H 1.48503 * 109.46733 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47145 * 300.00266 * 20 18 16 24 24 C 1.53781 * 113.61559 * 277.50149 * 6 4 3 25 25 C 1.53787 * 87.07990 * 220.02002 * 24 6 4 26 26 C 1.53776 * 87.08256 * 25.43213 * 25 24 6 27 27 H 1.08998 * 109.47144 * 60.00350 * 1 2 3 28 28 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47741 * 299.99963 * 1 2 3 30 30 H 1.09008 * 109.46672 * 119.99800 * 2 1 3 31 31 H 1.08996 * 109.47297 * 239.99746 * 2 1 3 32 32 H 1.08997 * 109.47125 * 69.66346 * 7 6 4 33 33 H 1.08997 * 109.46782 * 189.66761 * 7 6 4 34 34 H 0.97003 * 120.00011 * 359.97438 * 8 7 6 35 35 H 1.09002 * 109.47005 * 270.25318 * 12 11 10 36 36 H 1.08998 * 109.47224 * 30.26082 * 12 11 10 37 37 H 1.09005 * 109.46587 * 150.25650 * 12 11 10 38 38 H 1.08004 * 120.19192 * 179.71864 * 13 11 10 39 39 H 1.07996 * 120.86234 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99700 * 180.02562 * 19 18 16 41 41 H 1.08998 * 113.61298 * 334.56330 * 24 6 4 42 42 H 1.09000 * 113.61691 * 105.47143 * 24 6 4 43 43 H 1.08997 * 113.61234 * 270.88160 * 25 24 6 44 44 H 1.09003 * 113.61487 * 139.98288 * 25 24 6 45 45 H 1.09004 * 113.61285 * 220.02106 * 26 25 24 46 46 H 1.08998 * 113.69436 * 89.12652 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.2891 3.8421 1.0602 8 7 1.8295 3.7716 0.9555 9 6 1.0393 4.5091 1.8149 10 7 1.6021 5.2741 2.7355 11 6 0.8844 5.9985 3.5733 12 6 1.5867 6.8545 4.5956 13 6 -0.5018 5.9851 3.5371 14 6 -1.1524 5.2036 2.6039 15 6 -0.3723 4.4398 1.7116 16 6 -0.9839 3.6232 0.7381 17 1 -0.4557 2.7692 0.3405 18 6 -2.2753 3.9194 0.2873 19 7 -2.8039 5.0897 0.5394 20 14 -3.2441 2.6443 -0.6745 21 1 -3.4251 1.4284 0.1586 22 1 -4.5731 3.2007 -1.0345 23 1 -2.5042 2.2906 -1.9124 24 6 3.9867 3.5762 -1.3973 25 6 5.3568 4.1420 -0.9876 26 6 5.4581 2.9683 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 3.5986 3.5110 2.0514 33 1 3.6155 4.8699 0.9019 34 1 1.4182 3.2076 0.2821 35 1 1.7462 6.2763 5.5057 36 1 2.5483 7.1797 4.1984 37 1 0.9735 7.7268 4.8220 38 1 -1.0692 6.5825 4.2355 39 1 -2.2311 5.1778 2.5583 40 1 -3.6991 5.2948 0.2272 41 1 4.0393 2.8492 -2.2077 42 1 3.2297 4.3427 -1.5634 43 1 5.2994 5.1168 -0.5034 44 1 6.0996 4.1073 -1.7846 45 1 5.8889 3.2439 0.9632 46 1 5.9129 2.0743 -0.4262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158622298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:31 Heat of formation + Delta-G solvation = -41.797682 kcal Electronic energy + Delta-G solvation = -28040.167044 eV Core-core repulsion = 24316.008929 eV Total energy + Delta-G solvation = -3724.158115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93372 -38.71806 -38.33050 -36.33895 -34.41721 -34.00769 -31.56502 -30.79717 -29.93528 -28.02477 -27.17277 -25.79360 -24.70020 -23.71483 -22.83429 -21.36183 -20.68793 -20.62083 -18.73887 -17.50701 -17.15382 -16.62527 -16.42414 -15.84034 -15.36045 -15.14273 -14.50748 -14.15185 -13.90840 -13.80707 -13.59939 -13.23234 -12.91354 -12.68518 -12.54490 -12.41445 -12.24125 -11.96129 -11.82351 -11.71418 -11.50508 -11.42052 -11.37859 -11.32379 -11.20611 -11.08546 -10.78428 -10.49083 -10.43956 -10.40547 -10.33659 -9.99272 -9.69383 -9.23790 -8.79680 -8.03521 -7.81103 -6.74476 -6.43028 -4.15911 2.32747 2.75092 2.81884 3.04995 3.05326 3.13750 3.26914 3.92856 4.10351 4.46436 4.62047 4.70875 4.73632 4.90380 4.92789 5.11017 5.17550 5.40124 5.45958 5.60486 5.69115 5.71374 5.83401 5.85600 5.90694 5.94943 6.01094 6.03111 6.17526 6.18821 6.25461 6.30833 6.37166 6.47048 6.49471 6.61062 6.66140 6.88511 6.99281 7.19832 7.27443 7.71865 7.85366 7.91750 8.08594 8.35624 8.65932 8.74758 8.84500 9.08211 9.85689 10.25210 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.006362 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.904602 B = 4399.914467 C = 6469.702400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.066 3.934 3 O -0.341 6.341 4 C 0.482 3.518 5 O -0.517 6.517 6 C -0.095 4.095 7 C 0.173 3.827 8 N -0.725 5.725 9 C 0.311 3.689 10 N -0.532 5.532 11 C 0.025 3.975 12 C -0.073 4.073 13 C -0.187 4.187 14 C -0.124 4.124 15 C 0.029 3.971 16 C -0.451 4.451 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.801 5.801 20 Si 0.899 3.101 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.111 4.111 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.278 0.722 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.114 -4.452 -3.137 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 O -0.257 6.257 4 C 0.326 3.674 5 O -0.406 6.406 6 C -0.097 4.097 7 C 0.047 3.953 8 N -0.369 5.369 9 C 0.073 3.927 10 N -0.251 5.251 11 C -0.109 4.109 12 C -0.131 4.131 13 C -0.210 4.210 14 C -0.150 4.150 15 C 0.022 3.978 16 C -0.482 4.482 17 H 0.098 0.902 18 C -0.141 4.141 19 N -0.428 5.428 20 Si 0.723 3.277 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.158 4.158 25 C -0.175 4.175 26 C -0.149 4.149 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.254 0.746 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.115 -4.529 -3.048 10.624 hybrid contribution -1.740 -0.986 -0.737 2.132 sum 7.375 -5.516 -3.785 9.957 Atomic orbital electron populations 1.21906 0.92300 1.02593 1.04892 1.23012 0.95754 0.80151 1.01839 1.86501 1.24008 1.32112 1.83115 1.23498 0.80710 0.91887 0.71316 1.90602 1.60697 1.42930 1.46361 1.22406 0.97392 0.89761 1.00129 1.20614 0.82875 0.97042 0.94802 1.43940 1.02215 1.51721 1.39057 1.18431 0.87923 0.94390 0.91964 1.66348 1.40998 1.10880 1.06846 1.19935 0.90312 1.01452 0.99190 1.20281 0.99308 0.97209 0.96302 1.21215 0.94409 1.03690 1.01680 1.21400 0.99980 0.99361 0.94291 1.17904 0.89168 0.95970 0.94716 1.19223 0.98941 1.10694 1.19391 0.90180 1.25784 0.97789 0.95076 0.95489 1.69797 1.15630 1.19459 1.37912 0.86521 0.78982 0.81749 0.80410 1.18797 1.20520 1.19001 1.22953 0.98865 1.00311 0.93661 1.22838 0.96928 0.98478 0.99231 1.22919 0.91366 0.99588 1.00983 0.91307 0.90664 0.90126 0.91519 0.91733 0.92692 0.91495 0.74648 0.93362 0.92839 0.92983 0.88946 0.85491 0.91073 0.89793 0.89398 0.89201 0.90780 0.90191 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.00 37.16 0.37 -1.83 16 2 C 0.07 0.95 6.19 37.16 0.23 1.18 16 3 O -0.34 -5.76 7.21 -39.25 -0.28 -6.04 16 4 C 0.48 7.94 7.02 36.00 0.25 8.19 16 5 O -0.52 -9.10 15.65 -18.76 -0.29 -9.40 16 6 C -0.10 -1.39 1.04 -154.85 -0.16 -1.55 16 7 C 0.17 2.99 5.01 -4.04 -0.02 2.97 16 8 N -0.72 -15.04 5.12 -59.97 -0.31 -15.35 16 9 C 0.31 7.56 7.52 -155.02 -1.17 6.40 16 10 N -0.53 -12.76 9.44 -8.11 -0.08 -12.84 16 11 C 0.03 0.59 6.79 -82.37 -0.56 0.03 16 12 C -0.07 -1.34 10.15 36.01 0.37 -0.97 16 13 C -0.19 -4.45 9.69 -39.50 -0.38 -4.83 16 14 C -0.12 -3.20 8.79 -38.62 -0.34 -3.54 16 15 C 0.03 0.76 5.61 -106.47 -0.60 0.17 16 16 C -0.45 -11.22 8.54 -37.89 -0.32 -11.55 16 17 H 0.08 1.88 6.10 -52.49 -0.32 1.56 16 18 C 0.07 1.81 5.23 -17.32 -0.09 1.72 16 19 N -0.80 -20.23 10.82 55.55 0.60 -19.63 16 20 Si 0.90 17.96 29.58 -169.99 -5.03 12.93 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.12 -1.51 7.20 -25.92 -0.19 -1.70 16 25 C -0.14 -1.45 7.73 -25.92 -0.20 -1.65 16 26 C -0.11 -1.32 7.00 -25.92 -0.18 -1.50 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.26 7.88 -51.93 -0.41 0.86 16 30 H 0.07 0.93 8.13 -51.92 -0.42 0.51 16 31 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.15 7.34 -51.93 -0.38 0.77 16 34 H 0.41 8.48 4.03 -40.82 -0.16 8.31 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 39 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 43 H 0.09 0.93 7.64 -51.93 -0.40 0.54 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 46 H 0.10 1.16 7.43 -51.93 -0.39 0.77 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -28.73 373.08 -9.75 -38.48 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.00 Total: 14.70 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.99 Total: -8.48 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.22 Total: -47.81 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.58 Total: -15.44 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.73 -9.75 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158622298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.314 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds