Wall clock time and date at job start Tue Mar 31 2020 12:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47022 * 2 1 4 4 C 1.34226 * 117.00172 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99709 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00006 * 179.97438 * 4 3 2 7 7 C 1.53005 * 112.85118 * 48.80828 * 6 4 3 8 8 N 1.46497 * 109.46989 * 309.66645 * 7 6 4 9 9 C 1.38090 * 120.00270 * 180.02562 * 8 7 6 10 10 N 1.32269 * 119.90026 * 359.72209 * 9 8 7 11 11 C 1.31971 * 121.86060 * 179.74955 * 10 9 8 12 12 C 1.50704 * 119.27188 * 180.27127 * 11 10 9 13 13 C 1.38674 * 121.45043 * 0.53629 * 11 10 9 14 14 C 1.38015 * 119.62787 * 359.73998 * 13 11 10 15 15 C 1.41003 * 118.27925 * 359.97438 * 14 13 11 16 16 C 1.41017 * 120.70675 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99873 * 204.67800 * 16 15 14 18 18 C 1.39953 * 119.99713 * 24.68102 * 16 15 14 19 19 N 1.30864 * 119.99794 * 14.64989 * 18 16 15 20 20 Si 1.86801 * 119.99767 * 194.64269 * 18 16 15 21 21 H 1.48502 * 109.46820 * 60.00454 * 20 18 16 22 22 H 1.48503 * 109.46733 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47145 * 300.00266 * 20 18 16 24 24 C 1.53781 * 113.61559 * 277.50149 * 6 4 3 25 25 C 1.53787 * 87.07990 * 220.02002 * 24 6 4 26 26 C 1.53776 * 87.08256 * 25.43213 * 25 24 6 27 27 H 1.08998 * 109.47144 * 60.00350 * 1 2 3 28 28 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47741 * 299.99963 * 1 2 3 30 30 H 1.09008 * 109.46672 * 119.99800 * 2 1 3 31 31 H 1.08996 * 109.47297 * 239.99746 * 2 1 3 32 32 H 1.08997 * 109.47125 * 69.66346 * 7 6 4 33 33 H 1.08997 * 109.46782 * 189.66761 * 7 6 4 34 34 H 0.97003 * 120.00011 * 359.97438 * 8 7 6 35 35 H 1.09002 * 109.47005 * 270.25318 * 12 11 10 36 36 H 1.08998 * 109.47224 * 30.26082 * 12 11 10 37 37 H 1.09005 * 109.46587 * 150.25650 * 12 11 10 38 38 H 1.08004 * 120.19192 * 179.71864 * 13 11 10 39 39 H 1.07996 * 120.86234 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99700 * 180.02562 * 19 18 16 41 41 H 1.08998 * 113.61298 * 334.56330 * 24 6 4 42 42 H 1.09000 * 113.61691 * 105.47143 * 24 6 4 43 43 H 1.08997 * 113.61234 * 270.88160 * 25 24 6 44 44 H 1.09003 * 113.61487 * 139.98288 * 25 24 6 45 45 H 1.09004 * 113.61285 * 220.02106 * 26 25 24 46 46 H 1.08998 * 113.69436 * 89.12652 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.2891 3.8421 1.0602 8 7 1.8295 3.7716 0.9555 9 6 1.0393 4.5091 1.8149 10 7 1.6021 5.2741 2.7355 11 6 0.8844 5.9985 3.5733 12 6 1.5867 6.8545 4.5956 13 6 -0.5018 5.9851 3.5371 14 6 -1.1524 5.2036 2.6039 15 6 -0.3723 4.4398 1.7116 16 6 -0.9839 3.6232 0.7381 17 1 -0.4557 2.7692 0.3405 18 6 -2.2753 3.9194 0.2873 19 7 -2.8039 5.0897 0.5394 20 14 -3.2441 2.6443 -0.6745 21 1 -3.4251 1.4284 0.1586 22 1 -4.5731 3.2007 -1.0345 23 1 -2.5042 2.2906 -1.9124 24 6 3.9867 3.5762 -1.3973 25 6 5.3568 4.1420 -0.9876 26 6 5.4581 2.9683 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 3.5986 3.5110 2.0514 33 1 3.6155 4.8699 0.9019 34 1 1.4182 3.2076 0.2821 35 1 1.7462 6.2763 5.5057 36 1 2.5483 7.1797 4.1984 37 1 0.9735 7.7268 4.8220 38 1 -1.0692 6.5825 4.2355 39 1 -2.2311 5.1778 2.5583 40 1 -3.6991 5.2948 0.2272 41 1 4.0393 2.8492 -2.2077 42 1 3.2297 4.3427 -1.5634 43 1 5.2994 5.1168 -0.5034 44 1 6.0996 4.1073 -1.7846 45 1 5.8889 3.2439 0.9632 46 1 5.9129 2.0743 -0.4262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158622298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:30 Heat of formation + Delta-G solvation = -55.060750 kcal Electronic energy + Delta-G solvation = -28040.742173 eV Core-core repulsion = 24316.008929 eV Total energy + Delta-G solvation = -3724.733244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15971 -40.34267 -39.65910 -37.65265 -36.06915 -35.77513 -32.79202 -32.52434 -31.60400 -29.59657 -28.67412 -26.79109 -26.16917 -25.33560 -24.01617 -22.58809 -22.44791 -22.35719 -19.88634 -19.07982 -18.75734 -17.89630 -17.72258 -17.41947 -16.99344 -16.54496 -15.90302 -15.53973 -15.51992 -15.16578 -15.03148 -14.77191 -14.38256 -14.17483 -13.78962 -13.65159 -13.51135 -13.36112 -13.27258 -13.10549 -13.08731 -12.95910 -12.79240 -12.62366 -12.53628 -12.42468 -12.31854 -12.08306 -11.59719 -11.54978 -11.42872 -11.41196 -11.20343 -11.04046 -10.51919 -9.90598 -9.69385 -8.56814 -8.22536 -6.04571 0.96593 1.05141 1.28772 1.39895 1.49251 1.55020 1.64638 2.24298 2.69929 2.88122 3.39564 3.48409 3.63478 3.70704 3.81039 3.85973 3.98448 4.04079 4.24206 4.29449 4.45574 4.57327 4.61052 4.71590 4.75793 4.78074 4.78573 4.85442 4.88827 4.99341 5.01624 5.03499 5.07078 5.08819 5.10823 5.16096 5.24603 5.35345 5.41763 5.45664 5.48970 5.87283 5.98178 6.22861 6.48730 6.64849 6.84328 6.95817 7.01387 7.25393 8.01567 8.45088 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.006362 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.904602 B = 4399.914467 C = 6469.702400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.480 3.520 5 O -0.531 6.531 6 C -0.103 4.103 7 C 0.177 3.823 8 N -0.720 5.720 9 C 0.303 3.697 10 N -0.542 5.542 11 C 0.020 3.980 12 C -0.068 4.068 13 C -0.202 4.202 14 C -0.147 4.147 15 C -0.005 4.005 16 C -0.470 4.470 17 H 0.086 0.914 18 C 0.035 3.965 19 N -0.835 5.835 20 Si 0.963 3.037 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.254 1.254 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.103 4.103 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -4.929 -3.817 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.324 3.676 5 O -0.421 6.421 6 C -0.104 4.104 7 C 0.052 3.948 8 N -0.364 5.364 9 C 0.064 3.936 10 N -0.261 5.261 11 C -0.114 4.114 12 C -0.125 4.125 13 C -0.224 4.224 14 C -0.174 4.174 15 C -0.012 4.012 16 C -0.501 4.501 17 H 0.104 0.896 18 C -0.179 4.179 19 N -0.462 5.462 20 Si 0.784 3.216 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.178 1.178 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.438 -5.013 -3.730 12.165 hybrid contribution -2.106 -0.821 -0.463 2.307 sum 8.331 -5.833 -4.194 11.001 Atomic orbital electron populations 1.21912 0.91894 1.04186 1.03285 1.23202 0.96085 0.79289 1.02636 1.86497 1.24421 1.33608 1.83044 1.23857 0.80487 0.92453 0.70785 1.90583 1.60858 1.43497 1.47170 1.22526 0.99000 0.88322 1.00580 1.20640 0.80883 0.97892 0.95342 1.44046 1.03545 1.50708 1.38067 1.18715 0.88095 0.94462 0.92344 1.66516 1.41000 1.11370 1.07235 1.20749 0.90544 1.00885 0.99269 1.20328 0.99508 0.97301 0.95380 1.21459 0.95204 1.03915 1.01854 1.21415 0.99444 1.00877 0.95619 1.18262 0.90289 0.97018 0.95601 1.19429 0.99919 1.10985 1.19757 0.89634 1.26586 0.98310 0.96714 0.96243 1.69881 1.16101 1.21166 1.39086 0.85535 0.77454 0.79257 0.79364 1.17916 1.20228 1.17826 1.23002 0.99909 1.00135 0.92632 1.22809 0.95977 0.97846 0.99306 1.22939 0.88841 1.00364 1.01951 0.91852 0.87511 0.92611 0.91478 0.90110 0.93821 0.91159 0.74729 0.91702 0.92042 0.90875 0.86893 0.87129 0.90715 0.88734 0.90692 0.88916 0.88237 0.89405 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 10.00 71.98 0.72 -3.45 16 2 C 0.06 1.71 6.19 71.98 0.45 2.16 16 3 O -0.36 -12.11 7.21 -51.38 -0.37 -12.48 16 4 C 0.48 15.51 7.02 71.23 0.50 16.01 16 5 O -0.53 -18.19 15.65 21.95 0.34 -17.84 16 6 C -0.10 -2.89 1.04 -52.40 -0.05 -2.95 16 7 C 0.18 6.10 5.01 86.38 0.43 6.53 16 8 N -0.72 -30.33 5.12 -343.66 -1.76 -32.09 16 9 C 0.30 15.02 7.52 134.05 1.01 16.03 16 10 N -0.54 -26.02 9.44 -179.57 -1.70 -27.72 16 11 C 0.02 0.90 6.79 42.64 0.29 1.19 16 12 C -0.07 -2.33 10.15 71.24 0.72 -1.60 16 13 C -0.20 -9.67 9.69 22.32 0.22 -9.46 16 14 C -0.15 -7.86 8.79 22.89 0.20 -7.66 16 15 C 0.00 -0.25 5.61 -21.06 -0.12 -0.37 16 16 C -0.47 -24.06 8.54 23.37 0.20 -23.86 16 17 H 0.09 4.13 6.10 -2.91 -0.02 4.12 16 18 C 0.03 1.70 5.23 85.25 0.45 2.14 16 19 N -0.83 -43.40 10.82 21.83 0.24 -43.16 16 20 Si 0.96 36.94 29.58 68.60 2.03 38.97 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 24 C -0.12 -2.81 7.20 31.12 0.22 -2.59 16 25 C -0.12 -2.25 7.73 31.12 0.24 -2.01 16 26 C -0.10 -2.24 7.00 31.12 0.22 -2.03 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 30 H 0.07 1.85 8.13 -2.38 -0.02 1.83 16 31 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.37 7.34 -2.39 -0.02 2.35 16 34 H 0.41 17.26 4.03 -92.71 -0.37 16.89 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 40 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 41 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 42 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 43 H 0.09 1.68 7.64 -2.39 -0.02 1.67 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.77 8.10 -2.38 -0.02 1.76 16 46 H 0.10 2.14 7.43 -2.39 -0.02 2.13 16 Total: -1.00 -63.25 373.08 5.09 -58.16 By element: Atomic # 1 Polarization: 47.46 SS G_CDS: 0.61 Total: 48.07 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.69 Total: -11.91 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.22 Total: -102.98 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.03 Total: -30.32 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -63.25 5.09 -58.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158622298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.103 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds