Wall clock time and date at job start Tue Mar 31 2020 12:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.46868 * 2 1 4 4 C 1.34688 * 116.99897 * 179.97438 * 3 2 1 5 5 O 1.21432 * 120.00211 * 0.02562 * 4 3 2 6 6 C 1.48048 * 119.99822 * 179.97438 * 4 3 2 7 7 C 1.39178 * 119.68253 * 179.97438 * 6 4 3 8 8 C 1.38790 * 119.22281 * 180.02562 * 7 6 4 9 9 C 1.38285 * 118.58376 * 359.72310 * 8 7 6 10 10 C 1.50705 * 120.35132 * 180.26414 * 9 8 7 11 11 C 1.39480 * 119.29698 * 0.54207 * 9 8 7 12 12 N 1.38982 * 119.63243 * 179.72334 * 11 9 8 13 13 C 1.46852 * 110.99830 * 143.05557 * 12 11 9 14 14 C 1.53043 * 109.52263 * 185.84007 * 13 12 11 15 15 C 1.53113 * 109.27702 * 300.82051 * 14 13 12 16 16 C 1.53123 * 109.16291 * 57.65847 * 15 14 13 17 17 H 1.08992 * 109.50519 * 62.32125 * 16 15 14 18 18 C 1.50697 * 109.50375 * 182.40448 * 16 15 14 19 19 H 1.08003 * 120.00285 * 119.99766 * 18 16 15 20 20 C 1.37877 * 120.00217 * 300.27370 * 18 16 15 21 21 N 1.31521 * 119.99617 * 359.72161 * 20 18 16 22 22 Si 1.86796 * 120.00587 * 179.72755 * 20 18 16 23 23 H 1.48505 * 109.46841 * 59.99559 * 22 20 18 24 24 H 1.48495 * 109.47518 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47062 * 300.00116 * 22 20 18 26 26 C 1.46843 * 111.00454 * 267.26573 * 12 11 9 27 27 N 1.32052 * 120.73128 * 359.44963 * 11 9 8 28 28 H 1.09001 * 109.47308 * 299.99954 * 1 2 3 29 29 H 1.08995 * 109.47292 * 60.00179 * 1 2 3 30 30 H 1.09008 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47308 * 240.00046 * 2 1 3 32 32 H 1.09005 * 109.47207 * 119.99817 * 2 1 3 33 33 H 1.08005 * 120.38657 * 0.04819 * 7 6 4 34 34 H 1.08000 * 120.70957 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47048 * 265.08498 * 10 9 8 36 36 H 1.09005 * 109.46937 * 25.08446 * 10 9 8 37 37 H 1.09005 * 109.46738 * 145.08182 * 10 9 8 38 38 H 1.09001 * 109.46221 * 65.82713 * 13 12 11 39 39 H 1.08995 * 109.45608 * 305.85131 * 13 12 11 40 40 H 1.09001 * 109.49976 * 180.88127 * 14 13 12 41 41 H 1.08996 * 109.50164 * 60.76603 * 14 13 12 42 42 H 1.09004 * 109.52655 * 297.74887 * 15 14 13 43 43 H 1.08996 * 109.57569 * 177.59503 * 15 14 13 44 44 H 0.96997 * 119.99818 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.46101 * 54.14430 * 26 12 11 46 46 H 1.09003 * 109.45961 * 294.18084 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3492 1.5455 0.0005 5 8 4.0889 0.5825 0.0005 6 6 3.9150 2.9136 0.0000 7 6 5.2957 3.0883 0.0011 8 6 5.8158 4.3751 0.0011 9 6 4.9379 5.4436 -0.0058 10 6 5.4594 6.8575 -0.0121 11 6 3.5648 5.1987 -0.0011 12 7 2.6763 6.2674 -0.0022 13 6 1.4950 5.9687 -0.8219 14 6 0.6114 7.2146 -0.9188 15 6 0.1847 7.6424 0.4881 16 6 1.4337 7.9007 1.3354 17 1 2.0062 8.7193 0.8995 18 6 1.0231 8.2651 2.7388 19 1 1.3457 7.6571 3.5710 20 6 0.2308 9.3717 2.9600 21 7 -0.1620 10.1122 1.9465 22 14 -0.2845 9.8191 4.6988 23 1 0.9242 10.0727 5.5235 24 1 -1.1265 11.0419 4.6664 25 1 -1.0603 8.6987 5.2890 26 6 2.2934 6.6350 1.3670 27 7 3.0997 3.9628 -0.0010 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9547 2.2326 0.0016 34 1 6.8834 4.5385 0.0015 35 1 5.5006 7.2340 1.0100 36 1 6.4591 6.8742 -0.4461 37 1 4.7954 7.4869 -0.6047 38 1 0.9299 5.1577 -0.3626 39 1 1.8123 5.6700 -1.8209 40 1 -0.2730 6.9880 -1.5142 41 1 1.1714 8.0220 -1.3906 42 1 -0.4084 6.8505 0.9455 43 1 -0.4096 8.5541 0.4280 44 1 -0.7191 10.8909 2.1021 45 1 3.1906 6.8200 1.9577 46 1 1.7246 5.8207 1.8160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:08 Heat of formation + Delta-G solvation = -66.166598 kcal Electronic energy + Delta-G solvation = -27190.414753 eV Core-core repulsion = 23465.199923 eV Total energy + Delta-G solvation = -3725.214830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15349 -41.20996 -39.31548 -37.79312 -35.71060 -34.86712 -33.81395 -32.62991 -31.76820 -31.29014 -28.88114 -26.94560 -25.89382 -24.99413 -23.81149 -23.29769 -22.88843 -21.94741 -20.43900 -19.45732 -18.78647 -18.05174 -17.73077 -17.54357 -16.79687 -16.46420 -16.10512 -16.03244 -15.36710 -15.26862 -14.82138 -14.76313 -14.49869 -14.39260 -14.26806 -13.96148 -13.65917 -13.52718 -13.38738 -13.28138 -12.98465 -12.83550 -12.69551 -12.67702 -12.58863 -12.55734 -12.07347 -11.90235 -11.76870 -11.59819 -11.47807 -11.12062 -10.85194 -10.78312 -10.62451 -10.39162 -10.10915 -9.38140 -8.07033 -6.20640 -0.59003 0.11201 1.22265 1.43507 1.44163 1.46294 1.51752 2.41200 2.56220 2.71032 3.10167 3.20428 3.75014 3.84612 3.86430 3.95272 4.00675 4.03494 4.17949 4.23958 4.27555 4.31113 4.39903 4.55352 4.64172 4.69090 4.75813 4.85949 4.88028 4.88577 4.89426 4.93376 5.03597 5.05322 5.09961 5.19813 5.25743 5.31233 5.34778 5.47434 5.56738 5.64478 5.79753 6.01912 6.14823 6.30354 6.39275 6.41983 6.80263 6.89049 7.46824 8.97365 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.003752 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.253666 B = 7461.442662 C = 8486.642026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.528 3.472 5 O -0.518 6.518 6 C 0.064 3.936 7 C -0.104 4.104 8 C -0.066 4.066 9 C -0.081 4.081 10 C -0.105 4.105 11 C 0.275 3.725 12 N -0.477 5.477 13 C 0.077 3.923 14 C -0.108 4.108 15 C -0.105 4.105 16 C 0.059 3.941 17 H 0.012 0.988 18 C -0.538 4.538 19 H 0.048 0.952 20 C 0.021 3.979 21 N -0.911 5.911 22 Si 0.950 3.050 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.276 1.276 26 C 0.095 3.905 27 N -0.489 5.489 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.193 0.807 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.065 0.935 44 H 0.261 0.739 45 H 0.063 0.937 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -14.909 -6.703 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.372 3.628 5 O -0.407 6.407 6 C -0.073 4.073 7 C -0.125 4.125 8 C -0.092 4.092 9 C -0.085 4.085 10 C -0.162 4.162 11 C 0.043 3.957 12 N -0.199 5.199 13 C -0.050 4.050 14 C -0.145 4.145 15 C -0.143 4.143 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.576 4.576 19 H 0.066 0.934 20 C -0.179 4.179 21 N -0.550 5.550 22 Si 0.776 3.224 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.202 1.202 26 C -0.031 4.031 27 N -0.204 5.204 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.211 0.789 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 9.120 -14.833 -6.951 18.748 hybrid contribution -0.420 -0.301 1.319 1.417 sum 8.699 -15.134 -5.632 18.342 Atomic orbital electron populations 1.21830 0.90850 1.04486 1.03291 1.23409 0.96945 0.78670 1.03128 1.86723 1.22957 1.34091 1.82819 1.20984 0.81118 0.88687 0.72012 1.90791 1.60901 1.41755 1.47276 1.20004 0.91487 0.89521 1.06295 1.22268 0.93260 1.00242 0.96716 1.21892 1.02337 0.89377 0.95546 1.21212 0.91508 0.99538 0.96194 1.20759 1.02226 0.89900 1.03274 1.20169 0.92431 0.86502 0.96638 1.60022 1.15843 1.30649 1.13347 1.21886 0.89932 0.96847 0.96335 1.21598 0.98441 0.96724 0.97775 1.21490 0.99374 0.99663 0.93778 1.18560 0.92017 0.91092 0.94323 0.97029 1.21396 1.31989 1.10919 0.93319 0.93393 1.25617 0.95861 0.96057 1.00330 1.70001 1.36427 1.16955 1.31594 0.85736 0.78377 0.77483 0.80790 1.19553 1.20779 1.20156 1.22021 0.98251 0.97474 0.85370 1.67641 1.41357 0.99841 1.11529 0.92189 0.91697 0.87322 0.90296 0.90711 0.81309 0.78947 0.90706 0.88109 0.91117 0.94908 0.90791 0.91029 0.92100 0.96333 0.91647 0.92943 0.91857 0.97027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.29 71.98 0.74 -1.75 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.35 -10.45 10.04 -55.98 -0.56 -11.01 16 4 C 0.53 15.93 7.95 70.43 0.56 16.49 16 5 O -0.52 -15.73 16.10 20.06 0.32 -15.40 16 6 C 0.06 1.91 6.74 41.82 0.28 2.19 16 7 C -0.10 -2.33 9.63 22.63 0.22 -2.11 16 8 C -0.07 -1.25 9.81 22.41 0.22 -1.03 16 9 C -0.08 -2.05 5.92 -19.55 -0.12 -2.17 16 10 C -0.10 -2.30 9.72 71.24 0.69 -1.60 16 11 C 0.28 9.16 5.55 133.26 0.74 9.90 16 12 N -0.48 -17.80 3.68 -701.94 -2.58 -20.38 16 13 C 0.08 2.85 4.93 86.33 0.43 3.28 16 14 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 15 C -0.10 -5.03 5.02 30.67 0.15 -4.88 16 16 C 0.06 2.95 2.27 -11.49 -0.03 2.93 16 17 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 18 C -0.54 -29.56 8.57 25.60 0.22 -29.34 16 19 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 20 C 0.02 1.14 5.30 84.65 0.45 1.59 16 21 N -0.91 -51.76 11.34 21.45 0.24 -51.52 16 22 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.09 4.10 4.62 86.33 0.40 4.50 16 27 N -0.49 -16.88 9.00 -182.42 -1.64 -18.53 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.17 2.98 7.63 -2.91 -0.02 2.96 16 34 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 1.44 8.06 -2.38 -0.02 1.42 16 37 H 0.07 1.86 7.65 -2.38 -0.02 1.84 16 38 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 39 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 3.50 6.14 -2.39 -0.01 3.49 16 44 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.06 2.66 8.10 -2.38 -0.02 2.64 16 46 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -66.39 376.77 4.36 -62.04 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.96 Total: 13.92 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.59 Total: -4.47 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -3.98 Total: -90.42 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.24 Total: -26.41 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.39 4.36 -62.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.130 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds