Wall clock time and date at job start Tue Mar 31 2020 12:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47044 * 2 1 4 4 C 1.34761 * 116.99746 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99742 * 359.97438 * 4 3 2 6 6 C 1.47398 * 119.99983 * 179.97438 * 4 3 2 7 7 C 1.40421 * 120.47856 * 6.23129 * 6 4 3 8 8 C 1.36837 * 118.48273 * 179.76586 * 7 6 4 9 9 C 1.39419 * 119.38736 * 0.50209 * 8 7 6 10 10 N 1.38418 * 119.53111 * 179.76253 * 9 8 7 11 11 C 1.46844 * 111.00472 * 303.93663 * 10 9 8 12 12 C 1.53037 * 109.52489 * 174.16415 * 11 10 9 13 13 C 1.53114 * 109.28192 * 59.17525 * 12 11 10 14 14 C 1.53121 * 109.15976 * 302.34727 * 13 12 11 15 15 H 1.08997 * 109.50638 * 297.71085 * 14 13 12 16 16 C 1.50709 * 109.53419 * 177.61476 * 14 13 12 17 17 H 1.08000 * 119.99801 * 240.09515 * 16 14 13 18 18 C 1.37877 * 119.99793 * 60.09754 * 16 14 13 19 19 N 1.31508 * 120.00409 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99595 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47085 * 90.00092 * 20 18 16 22 22 H 1.48495 * 109.46977 * 210.00196 * 20 18 16 23 23 H 1.48501 * 109.46956 * 330.00015 * 20 18 16 24 24 C 1.46849 * 110.99865 * 179.72147 * 10 9 8 25 25 N 1.32614 * 120.92855 * 359.48517 * 9 8 7 26 26 C 1.31655 * 121.64969 * 0.25695 * 25 9 8 27 27 C 1.50696 * 119.74759 * 179.97438 * 26 25 9 28 28 H 1.09003 * 109.47263 * 300.00391 * 1 2 3 29 29 H 1.09003 * 109.46943 * 60.00002 * 1 2 3 30 30 H 1.08992 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46849 * 239.99947 * 2 1 3 32 32 H 1.08992 * 109.46997 * 119.99502 * 2 1 3 33 33 H 1.07990 * 120.75621 * 0.02562 * 7 6 4 34 34 H 1.08001 * 120.30464 * 180.23629 * 8 7 6 35 35 H 1.08999 * 109.45769 * 294.17276 * 11 10 9 36 36 H 1.08995 * 109.46526 * 54.14297 * 11 10 9 37 37 H 1.08999 * 109.50332 * 179.11855 * 12 11 10 38 38 H 1.08999 * 109.50279 * 299.23245 * 12 11 10 39 39 H 1.08997 * 109.52567 * 182.44341 * 13 12 11 40 40 H 1.09003 * 109.52336 * 62.25373 * 13 12 11 41 41 H 0.96995 * 120.00488 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.46291 * 65.82693 * 24 10 9 43 43 H 1.08999 * 109.45356 * 305.85519 * 24 10 9 44 44 H 1.09002 * 109.47233 * 96.58702 * 27 26 25 45 45 H 1.08999 * 109.47144 * 216.58581 * 27 26 25 46 46 H 1.08997 * 109.46907 * 336.58997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9134 2.9076 -0.0011 7 6 3.0740 4.0256 0.1302 8 6 3.6410 5.2710 0.1293 9 6 5.0227 5.3936 -0.0114 10 7 5.5989 6.6521 -0.0176 11 6 5.0073 7.4966 -1.0631 12 6 5.5617 8.9183 -0.9468 13 6 7.0851 8.8807 -1.0961 14 6 7.6723 7.9565 -0.0257 15 1 7.4455 8.3547 0.9632 16 6 9.1664 7.8672 -0.2016 17 1 9.6312 6.9117 -0.3947 18 6 9.9398 9.0054 -0.1159 19 7 9.3739 10.1688 0.1198 20 14 11.7919 8.8946 -0.3331 21 1 12.1334 9.0704 -1.7676 22 1 12.4486 9.9599 0.4662 23 1 12.2658 7.5654 0.1293 24 6 7.0568 6.5627 -0.1688 25 7 5.7931 4.3211 -0.1338 26 6 5.2893 3.1048 -0.1328 27 6 6.2047 1.9162 -0.2753 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.0059 3.9051 0.2338 34 1 3.0235 6.1510 0.2323 35 1 5.2559 7.0890 -2.0430 36 1 3.9242 7.5182 -0.9431 37 1 5.1343 9.5410 -1.7327 38 1 5.3016 9.3317 0.0276 39 1 7.4883 9.8856 -0.9706 40 1 7.3450 8.5038 -2.0853 41 1 9.9180 10.9695 0.1805 42 1 7.2958 6.1594 -1.1528 43 1 7.4620 5.9059 0.6010 44 1 6.4360 1.5153 0.7116 45 1 5.7132 1.1487 -0.8731 46 1 7.1270 2.2249 -0.7673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:47 Heat of formation + Delta-G solvation = -48.318401 kcal Electronic energy + Delta-G solvation = -26660.640622 eV Core-core repulsion = 22936.199748 eV Total energy + Delta-G solvation = -3724.440874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07398 -40.06615 -38.05985 -36.71237 -34.19096 -33.20876 -32.37503 -31.87795 -30.35997 -30.07765 -27.80765 -25.09788 -24.98931 -23.64270 -22.46597 -22.19711 -21.43876 -20.71367 -18.85243 -18.00863 -17.28772 -16.91016 -16.75304 -16.12467 -15.88414 -14.94467 -14.61963 -14.46327 -14.26418 -13.95939 -13.87183 -13.35252 -13.24182 -13.13607 -13.00331 -12.93294 -12.50910 -12.38147 -12.21509 -12.17491 -12.00615 -11.82641 -11.76982 -10.96359 -10.86925 -10.76124 -10.71514 -10.33954 -10.22080 -10.03792 -9.94467 -9.65325 -9.43099 -9.39752 -9.16240 -8.75200 -8.33585 -7.84922 -6.00903 -4.06533 0.60476 1.31962 2.47892 2.49460 3.30690 3.37502 3.41425 3.64122 3.93248 4.38281 4.49009 4.53865 4.61893 4.68813 4.73951 4.94857 5.02362 5.07686 5.29137 5.34459 5.41550 5.44194 5.52584 5.59485 5.63259 5.70022 5.77825 5.80488 5.92289 5.97922 6.08213 6.13022 6.28649 6.34687 6.42762 6.49484 6.52672 6.67870 6.86998 6.96311 7.19253 7.33128 7.58499 7.66766 7.72148 7.98375 8.04518 8.14321 8.42277 8.96870 9.58074 11.05525 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002768 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.252750 B =10113.437116 C =11091.945940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.521 3.479 5 O -0.509 6.509 6 C -0.241 4.241 7 C 0.005 3.995 8 C -0.218 4.218 9 C 0.369 3.631 10 N -0.473 5.473 11 C 0.068 3.932 12 C -0.120 4.120 13 C -0.115 4.115 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.076 3.924 25 N -0.524 5.524 26 C 0.233 3.767 27 C -0.113 4.113 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.751 -14.280 -1.721 22.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.275 6.275 4 C 0.368 3.632 5 O -0.399 6.399 6 C -0.246 4.246 7 C -0.020 4.020 8 C -0.241 4.241 9 C 0.135 3.865 10 N -0.186 5.186 11 C -0.057 4.057 12 C -0.158 4.158 13 C -0.153 4.153 14 C 0.031 3.969 15 H 0.052 0.948 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.049 4.049 25 N -0.240 5.240 26 C 0.093 3.907 27 C -0.169 4.169 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.674 -13.928 -1.345 21.767 hybrid contribution 0.225 -0.472 -0.488 0.715 sum -16.449 -14.400 -1.834 21.938 Atomic orbital electron populations 1.21809 0.92674 1.02936 1.03558 1.23000 0.95234 0.80183 1.02631 1.86547 1.24142 1.32234 1.84595 1.20830 0.80266 0.89567 0.72572 1.90785 1.59664 1.42706 1.46744 1.19621 0.94796 0.90825 1.19376 1.21325 1.00146 0.90885 0.89669 1.21298 0.94511 0.98698 1.09598 1.20438 0.89798 0.89717 0.86542 1.58792 1.09876 1.06402 1.43576 1.22264 0.98157 0.94510 0.90761 1.21751 0.99624 0.92902 1.01491 1.21726 0.90195 1.04728 0.98629 1.18779 0.94119 0.88163 0.95823 0.94757 1.21086 0.91248 0.93846 1.48890 0.92547 1.24926 0.98475 0.95416 0.95018 1.69872 1.35192 0.98392 1.49377 0.86595 0.85607 0.77793 0.78024 1.20743 1.21260 1.19874 1.22377 0.80421 1.01395 1.00711 1.67884 1.39010 0.97824 1.19320 1.21343 0.90061 0.92877 0.86449 1.21083 0.98341 0.93604 1.03903 0.91448 0.91466 0.90263 0.91224 0.91209 0.83813 0.83997 0.93829 0.91025 0.92447 0.91628 0.88632 0.94715 0.93010 0.93996 0.90689 0.89714 0.88480 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.52 6.20 37.16 0.23 0.75 16 3 O -0.36 -3.94 9.56 -40.66 -0.39 -4.33 16 4 C 0.52 6.83 7.82 34.46 0.27 7.10 16 5 O -0.51 -7.32 13.15 -19.27 -0.25 -7.58 16 6 C -0.24 -3.33 5.89 -104.83 -0.62 -3.95 16 7 C 0.01 0.06 9.67 -39.27 -0.38 -0.32 16 8 C -0.22 -2.95 9.10 -39.65 -0.36 -3.31 16 9 C 0.37 6.26 6.39 -155.30 -0.99 5.26 16 10 N -0.47 -8.74 4.66 -173.28 -0.81 -9.55 16 11 C 0.07 1.10 5.24 -3.84 -0.02 1.08 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 14 C 0.05 1.23 2.26 -91.69 -0.21 1.02 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.91 11.36 55.43 0.63 -24.28 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.08 1.64 3.86 -3.83 -0.01 1.63 16 25 N -0.52 -9.28 8.55 -8.38 -0.07 -9.35 16 26 C 0.23 3.62 6.82 -82.15 -0.56 3.06 16 27 C -0.11 -1.54 8.87 36.00 0.32 -1.22 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.34 7.71 -52.49 -0.40 0.94 16 34 H 0.14 1.61 7.13 -52.49 -0.37 1.24 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.95 6.65 -51.93 -0.35 0.60 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 43 H 0.07 1.70 7.69 -51.93 -0.40 1.30 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.10 1.30 5.85 -51.93 -0.30 0.99 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -29.61 368.59 -10.18 -39.79 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.18 Total: 0.52 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.64 Total: -6.95 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.25 Total: -43.17 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.64 Total: -11.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.61 -10.18 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.527 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds