Wall clock time and date at job start Tue Mar 31 2020 12:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47044 * 2 1 4 4 C 1.34761 * 116.99746 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99742 * 359.97438 * 4 3 2 6 6 C 1.47398 * 119.99983 * 179.97438 * 4 3 2 7 7 C 1.40421 * 120.47856 * 6.23129 * 6 4 3 8 8 C 1.36837 * 118.48273 * 179.76586 * 7 6 4 9 9 C 1.39419 * 119.38736 * 0.50209 * 8 7 6 10 10 N 1.38418 * 119.53111 * 179.76253 * 9 8 7 11 11 C 1.46844 * 111.00472 * 303.93663 * 10 9 8 12 12 C 1.53037 * 109.52489 * 174.16415 * 11 10 9 13 13 C 1.53114 * 109.28192 * 59.17525 * 12 11 10 14 14 C 1.53121 * 109.15976 * 302.34727 * 13 12 11 15 15 H 1.08997 * 109.50638 * 297.71085 * 14 13 12 16 16 C 1.50709 * 109.53419 * 177.61476 * 14 13 12 17 17 H 1.08000 * 119.99801 * 240.09515 * 16 14 13 18 18 C 1.37877 * 119.99793 * 60.09754 * 16 14 13 19 19 N 1.31508 * 120.00409 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99595 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47085 * 90.00092 * 20 18 16 22 22 H 1.48495 * 109.46977 * 210.00196 * 20 18 16 23 23 H 1.48501 * 109.46956 * 330.00015 * 20 18 16 24 24 C 1.46849 * 110.99865 * 179.72147 * 10 9 8 25 25 N 1.32614 * 120.92855 * 359.48517 * 9 8 7 26 26 C 1.31655 * 121.64969 * 0.25695 * 25 9 8 27 27 C 1.50696 * 119.74759 * 179.97438 * 26 25 9 28 28 H 1.09003 * 109.47263 * 300.00391 * 1 2 3 29 29 H 1.09003 * 109.46943 * 60.00002 * 1 2 3 30 30 H 1.08992 * 109.47450 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46849 * 239.99947 * 2 1 3 32 32 H 1.08992 * 109.46997 * 119.99502 * 2 1 3 33 33 H 1.07990 * 120.75621 * 0.02562 * 7 6 4 34 34 H 1.08001 * 120.30464 * 180.23629 * 8 7 6 35 35 H 1.08999 * 109.45769 * 294.17276 * 11 10 9 36 36 H 1.08995 * 109.46526 * 54.14297 * 11 10 9 37 37 H 1.08999 * 109.50332 * 179.11855 * 12 11 10 38 38 H 1.08999 * 109.50279 * 299.23245 * 12 11 10 39 39 H 1.08997 * 109.52567 * 182.44341 * 13 12 11 40 40 H 1.09003 * 109.52336 * 62.25373 * 13 12 11 41 41 H 0.96995 * 120.00488 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.46291 * 65.82693 * 24 10 9 43 43 H 1.08999 * 109.45356 * 305.85519 * 24 10 9 44 44 H 1.09002 * 109.47233 * 96.58702 * 27 26 25 45 45 H 1.08999 * 109.47144 * 216.58581 * 27 26 25 46 46 H 1.08997 * 109.46907 * 336.58997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9134 2.9076 -0.0011 7 6 3.0740 4.0256 0.1302 8 6 3.6410 5.2710 0.1293 9 6 5.0227 5.3936 -0.0114 10 7 5.5989 6.6521 -0.0176 11 6 5.0073 7.4966 -1.0631 12 6 5.5617 8.9183 -0.9468 13 6 7.0851 8.8807 -1.0961 14 6 7.6723 7.9565 -0.0257 15 1 7.4455 8.3547 0.9632 16 6 9.1664 7.8672 -0.2016 17 1 9.6312 6.9117 -0.3947 18 6 9.9398 9.0054 -0.1159 19 7 9.3739 10.1688 0.1198 20 14 11.7919 8.8946 -0.3331 21 1 12.1334 9.0704 -1.7676 22 1 12.4486 9.9599 0.4662 23 1 12.2658 7.5654 0.1293 24 6 7.0568 6.5627 -0.1688 25 7 5.7931 4.3211 -0.1338 26 6 5.2893 3.1048 -0.1328 27 6 6.2047 1.9162 -0.2753 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.0059 3.9051 0.2338 34 1 3.0235 6.1510 0.2323 35 1 5.2559 7.0890 -2.0430 36 1 3.9242 7.5182 -0.9431 37 1 5.1343 9.5410 -1.7327 38 1 5.3016 9.3317 0.0276 39 1 7.4883 9.8856 -0.9706 40 1 7.3450 8.5038 -2.0853 41 1 9.9180 10.9695 0.1805 42 1 7.2958 6.1594 -1.1528 43 1 7.4620 5.9059 0.6010 44 1 6.4360 1.5153 0.7116 45 1 5.7132 1.1487 -0.8731 46 1 7.1270 2.2249 -0.7673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:46 Heat of formation + Delta-G solvation = -63.819410 kcal Electronic energy + Delta-G solvation = -26661.312796 eV Core-core repulsion = 22936.199748 eV Total energy + Delta-G solvation = -3725.113048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20195 -41.16740 -39.43415 -37.69161 -35.88680 -34.28625 -34.02777 -32.57222 -31.83065 -31.65558 -28.94019 -27.00249 -26.30108 -24.51346 -23.85159 -23.40097 -22.61849 -21.94423 -20.54006 -19.00996 -18.84016 -18.07477 -17.65375 -17.57855 -17.26186 -16.50678 -16.14673 -15.61085 -15.46066 -15.09618 -15.04673 -14.77943 -14.47115 -14.37062 -14.26254 -14.07740 -13.85944 -13.60814 -13.48383 -13.20181 -13.06900 -12.86419 -12.82177 -12.72366 -12.56525 -12.46138 -11.90116 -11.80880 -11.56330 -11.50185 -11.33318 -11.12142 -11.04993 -10.84441 -10.64312 -10.46716 -10.38345 -9.15675 -8.10655 -6.23797 -0.52061 0.24980 1.40023 1.40989 1.42738 1.51306 1.59677 2.37317 2.48678 2.74291 3.16669 3.24157 3.59221 3.72963 3.91085 3.99663 4.06061 4.10840 4.12828 4.15136 4.34662 4.39767 4.49852 4.57015 4.62550 4.64825 4.68511 4.75480 4.81655 4.91433 4.93096 4.97319 4.97936 5.04576 5.06246 5.10688 5.19528 5.30667 5.34512 5.47607 5.51515 5.62007 5.72457 5.98438 6.13013 6.17132 6.36954 6.69020 6.84911 6.92941 7.43639 8.94208 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002768 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.252750 B =10113.437116 C =11091.945940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.525 3.475 5 O -0.526 6.526 6 C -0.238 4.238 7 C 0.019 3.981 8 C -0.205 4.205 9 C 0.342 3.658 10 N -0.482 5.482 11 C 0.069 3.931 12 C -0.111 4.111 13 C -0.108 4.108 14 C 0.050 3.950 15 H -0.001 1.001 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.273 1.273 24 C 0.101 3.899 25 N -0.558 5.558 26 C 0.212 3.788 27 C -0.106 4.106 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.611 -15.168 -2.121 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.271 6.271 4 C 0.371 3.629 5 O -0.417 6.417 6 C -0.243 4.243 7 C -0.006 4.006 8 C -0.228 4.228 9 C 0.109 3.891 10 N -0.196 5.196 11 C -0.055 4.055 12 C -0.148 4.148 13 C -0.146 4.146 14 C 0.031 3.969 15 H 0.018 0.982 16 C -0.575 4.575 17 H 0.065 0.935 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.778 3.222 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.198 1.198 24 C -0.026 4.026 25 N -0.274 5.274 26 C 0.072 3.928 27 C -0.163 4.163 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.199 0.801 34 H 0.190 0.810 35 H 0.059 0.941 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.567 -14.840 -1.747 24.620 hybrid contribution 1.024 -0.328 -0.349 1.131 sum -18.543 -15.168 -2.096 24.048 Atomic orbital electron populations 1.21829 0.90312 1.04391 1.03802 1.23325 0.97021 0.78778 1.02735 1.86534 1.22541 1.34008 1.83976 1.20694 0.80989 0.88971 0.72235 1.90779 1.60332 1.43153 1.47462 1.19800 0.94385 0.92099 1.18008 1.21707 1.01645 0.89565 0.87645 1.21541 0.92858 1.00362 1.08009 1.20613 0.91303 0.88724 0.88437 1.58834 1.07614 1.08117 1.45078 1.22360 1.00318 0.92640 0.90180 1.21641 0.95881 0.94961 1.02348 1.21515 0.93894 1.02061 0.97155 1.18680 0.93394 0.90275 0.94564 0.98234 1.21417 0.93149 0.93618 1.49282 0.93539 1.25652 1.02652 0.95106 0.94737 1.69996 1.36560 0.98805 1.49715 0.85646 0.80577 0.77745 0.78233 1.19962 1.20629 1.19768 1.21804 0.83193 0.98624 0.98954 1.67754 1.40527 0.98859 1.20277 1.21542 0.91345 0.92455 0.87460 1.21037 0.97962 0.93296 1.03957 0.91174 0.91195 0.88229 0.91154 0.91205 0.80063 0.81046 0.94093 0.86679 0.89429 0.92067 0.91689 0.95612 0.92903 0.95419 0.92900 0.89567 0.88095 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 71.98 0.74 -0.43 16 2 C 0.05 0.77 6.20 71.98 0.45 1.22 16 3 O -0.35 -6.79 9.56 -56.72 -0.54 -7.33 16 4 C 0.52 12.71 7.82 70.23 0.55 13.26 16 5 O -0.53 -14.53 13.15 19.81 0.26 -14.27 16 6 C -0.24 -6.12 5.89 -20.00 -0.12 -6.24 16 7 C 0.02 0.40 9.67 22.47 0.22 0.62 16 8 C -0.21 -4.87 9.10 22.23 0.20 -4.67 16 9 C 0.34 11.26 6.39 133.27 0.85 12.11 16 10 N -0.48 -17.68 4.66 -702.12 -3.27 -20.96 16 11 C 0.07 2.12 5.24 86.33 0.45 2.57 16 12 C -0.11 -3.84 6.09 30.64 0.19 -3.65 16 13 C -0.11 -5.01 5.03 30.67 0.15 -4.86 16 14 C 0.05 2.56 2.26 -11.48 -0.03 2.53 16 15 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 18 C 0.02 0.99 5.30 84.66 0.45 1.44 16 19 N -0.91 -52.56 11.36 21.45 0.24 -52.32 16 20 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.10 4.54 3.86 86.33 0.33 4.88 16 25 N -0.56 -19.94 8.55 -180.42 -1.54 -21.48 16 26 C 0.21 6.52 6.82 42.92 0.29 6.81 16 27 C -0.11 -2.95 8.87 71.23 0.63 -2.31 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.18 2.42 7.71 -2.92 -0.02 2.40 16 34 H 0.17 3.02 7.13 -2.91 -0.02 3.00 16 35 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 2.55 6.65 -2.39 -0.02 2.53 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.06 3.41 6.16 -2.39 -0.01 3.39 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 43 H 0.05 2.55 7.69 -2.39 -0.02 2.54 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.10 2.70 5.85 -2.39 -0.01 2.69 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -67.51 368.59 3.72 -63.78 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.97 Total: 13.07 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.58 Total: -6.92 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -4.57 Total: -94.75 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.28 Total: -21.60 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.51 3.72 -63.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.036 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds