Wall clock time and date at job start Tue Mar 31 2020 12:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47120 * 2 1 4 4 C 1.34230 * 117.00217 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99574 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00462 * 179.97438 * 4 3 2 7 7 C 1.50704 * 109.47538 * 179.97438 * 6 4 3 8 8 C 1.38884 * 120.74115 * 269.98024 * 7 6 4 9 9 C 1.38028 * 119.32505 * 180.02562 * 8 7 6 10 10 N 1.31975 * 120.85513 * 359.71854 * 9 8 7 11 11 C 1.32397 * 121.62220 * 0.56868 * 10 9 8 12 12 N 1.39007 * 119.70558 * 179.70634 * 11 10 9 13 13 C 1.46847 * 110.99885 * 123.68349 * 12 11 10 14 14 C 1.53028 * 109.52289 * 174.16447 * 13 12 11 15 15 C 1.53115 * 109.28362 * 59.17763 * 14 13 12 16 16 C 1.53123 * 109.15886 * 302.34747 * 15 14 13 17 17 H 1.09002 * 109.50371 * 297.70988 * 16 15 14 18 18 C 1.50698 * 109.50354 * 177.63232 * 16 15 14 19 19 H 1.08003 * 120.00069 * 240.07770 * 18 16 15 20 20 C 1.37878 * 119.99970 * 60.07355 * 18 16 15 21 21 N 1.31514 * 119.99929 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 119.99930 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47247 * 60.00708 * 22 20 18 24 24 H 1.48501 * 109.47092 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47485 * 300.00577 * 22 20 18 26 26 C 1.46933 * 110.98276 * 359.45549 * 12 11 10 27 27 C 1.38292 * 120.74795 * 89.99702 * 7 6 4 28 28 H 1.08993 * 109.47228 * 300.00292 * 1 2 3 29 29 H 1.09000 * 109.46697 * 60.00404 * 1 2 3 30 30 H 1.08999 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47118 * 239.99754 * 2 1 3 32 32 H 1.09003 * 109.47195 * 119.99468 * 2 1 3 33 33 H 1.09004 * 109.47057 * 59.99510 * 6 4 3 34 34 H 1.09006 * 109.47196 * 299.99728 * 6 4 3 35 35 H 1.07993 * 120.33983 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.56896 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46124 * 54.14140 * 13 12 11 38 38 H 1.09004 * 109.45292 * 294.17477 * 13 12 11 39 39 H 1.09005 * 109.50095 * 299.23443 * 14 13 12 40 40 H 1.09000 * 109.50556 * 179.12336 * 14 13 12 41 41 H 1.08994 * 109.52606 * 182.44091 * 15 14 13 42 42 H 1.09000 * 109.57447 * 62.27763 * 15 14 13 43 43 H 0.97004 * 119.99788 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.45389 * 65.84035 * 26 12 11 45 45 H 1.09002 * 109.51493 * 305.83555 * 26 12 11 46 46 H 1.08001 * 120.45275 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.4257 2.8585 -0.0010 8 6 6.1347 2.8223 1.1927 9 6 7.5127 2.7507 1.1587 10 7 8.1602 2.7108 0.0094 11 6 7.5208 2.7488 -1.1493 12 7 8.2432 2.7105 -2.3363 13 6 7.8047 1.5941 -3.1835 14 6 8.5157 1.6689 -4.5365 15 6 10.0296 1.6030 -4.3165 16 6 10.4533 2.7478 -3.3920 17 1 10.2283 3.7023 -3.8681 18 6 11.9333 2.6561 -3.1235 19 1 12.2921 2.5359 -2.1119 20 6 12.8293 2.7256 -4.1691 21 7 12.3924 2.8725 -5.4008 22 14 14.6639 2.6127 -3.8361 23 1 14.9701 1.3125 -3.1873 24 1 15.4068 2.7137 -5.1179 25 1 15.0734 3.7225 -2.9383 26 6 9.6869 2.6422 -2.0716 27 6 6.1319 2.8209 -1.1895 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5851 3.4698 0.8888 34 1 3.5846 3.4693 -0.8912 35 1 5.6131 2.8508 2.1379 36 1 8.0678 2.7219 2.0846 37 1 6.7271 1.6551 -3.3355 38 1 8.0498 0.6504 -2.6960 39 1 8.2602 2.6063 -5.0305 40 1 8.2018 0.8313 -5.1594 41 1 10.5414 1.6996 -5.2739 42 1 10.2909 0.6492 -3.8582 43 1 13.0228 2.9218 -6.1364 44 1 9.9231 1.6935 -1.5895 45 1 9.9764 3.4642 -1.4169 46 1 5.6124 2.8481 -2.1360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:54 Heat of formation + Delta-G solvation = -51.424364 kcal Electronic energy + Delta-G solvation = -26453.552834 eV Core-core repulsion = 22728.977275 eV Total energy + Delta-G solvation = -3724.575559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93998 -40.21309 -37.92786 -36.90554 -34.26875 -33.61088 -32.12019 -31.87088 -30.14305 -29.13807 -28.84611 -25.07778 -24.18323 -23.73556 -22.98867 -21.78263 -21.18012 -20.47365 -18.64814 -18.01559 -17.15875 -17.08940 -16.45137 -16.20812 -15.99362 -15.49508 -14.75182 -14.60057 -14.41294 -14.11545 -13.79689 -13.60846 -13.32435 -13.16686 -12.83549 -12.78207 -12.58664 -12.47973 -12.31769 -12.14051 -11.96385 -11.77771 -11.59042 -10.90172 -10.87433 -10.78449 -10.76277 -10.66963 -10.15005 -9.86469 -9.75545 -9.51419 -9.33957 -9.23179 -9.06010 -8.66385 -8.26711 -7.62346 -5.94870 -4.00226 1.26804 1.37973 1.95539 2.45212 3.36017 3.39883 3.43255 3.83720 4.11395 4.32538 4.48620 4.51499 4.53444 4.61740 4.63316 4.88733 4.92829 5.04769 5.22448 5.29169 5.32384 5.35063 5.37067 5.43347 5.56278 5.61066 5.69329 5.81909 5.94311 5.98285 6.14345 6.18924 6.31564 6.46143 6.52111 6.62097 6.65623 6.81164 6.99437 7.11328 7.32336 7.46519 7.49155 7.77431 7.79394 8.07717 8.15434 8.34039 8.51219 9.03094 9.63727 11.11477 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.002612 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.494934 B =10718.813427 C =11415.321743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.462 3.538 5 O -0.494 6.494 6 C -0.070 4.070 7 C -0.020 4.020 8 C -0.202 4.202 9 C 0.130 3.870 10 N -0.513 5.513 11 C 0.330 3.670 12 N -0.477 5.477 13 C 0.069 3.931 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.050 3.950 17 H 0.034 0.966 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.080 3.920 27 C -0.178 4.178 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.348 -2.235 10.623 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.304 3.696 5 O -0.380 6.380 6 C -0.108 4.108 7 C -0.028 4.028 8 C -0.224 4.224 9 C -0.028 4.028 10 N -0.228 5.228 11 C 0.098 3.902 12 N -0.193 5.193 13 C -0.056 4.056 14 C -0.157 4.157 15 C -0.152 4.152 16 C 0.032 3.968 17 H 0.052 0.948 18 C -0.550 4.550 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.046 4.046 27 C -0.201 4.201 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.204 -2.186 10.072 24.480 hybrid contribution 0.240 -0.765 0.574 0.986 sum -21.964 -2.951 10.647 24.586 Atomic orbital electron populations 1.21809 0.92534 1.03047 1.03541 1.23041 0.95360 0.80089 1.02773 1.86487 1.24492 1.32574 1.84295 1.23554 0.80537 0.92589 0.72918 1.90737 1.60281 1.42940 1.44037 1.20283 0.91846 0.91612 1.07037 1.19337 0.93012 0.96954 0.93513 1.21685 0.95722 1.07209 0.97759 1.22499 0.91339 0.93326 0.95663 1.67775 1.41000 1.16024 0.97965 1.20096 0.89808 0.91148 0.89187 1.59157 1.08359 1.41192 1.10581 1.22198 0.98868 0.90009 0.94573 1.21732 0.98930 1.01085 0.93904 1.21707 0.90846 0.98663 1.03954 1.18763 0.93372 0.95362 0.89349 0.94820 1.21074 0.90680 1.49921 0.93317 0.92661 1.24932 0.98709 0.95123 0.95129 1.69878 1.34178 1.50221 0.98620 0.86658 0.85376 0.78617 0.77332 1.20353 1.21369 1.20279 1.22292 0.81235 1.00647 1.00402 1.21359 0.93699 1.06671 0.98392 0.91475 0.91393 0.90190 0.91109 0.91203 0.86360 0.86318 0.85493 0.82973 0.91587 0.94326 0.91751 0.92742 0.88753 0.94832 0.93026 0.94495 0.90975 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.36 -3.39 10.22 -39.26 -0.40 -3.79 16 4 C 0.46 5.03 7.95 36.00 0.29 5.32 16 5 O -0.49 -7.22 15.78 -18.76 -0.30 -7.52 16 6 C -0.07 -0.61 5.99 -29.04 -0.17 -0.78 16 7 C -0.02 -0.25 4.41 -104.36 -0.46 -0.71 16 8 C -0.20 -2.48 9.81 -39.42 -0.39 -2.87 16 9 C 0.13 1.87 11.17 -17.57 -0.20 1.67 16 10 N -0.51 -9.41 8.69 -12.43 -0.11 -9.52 16 11 C 0.33 6.03 6.40 -155.02 -0.99 5.04 16 12 N -0.48 -9.56 4.68 -173.16 -0.81 -10.37 16 13 C 0.07 1.27 5.25 -3.84 -0.02 1.25 16 14 C -0.12 -2.30 6.09 -26.66 -0.16 -2.46 16 15 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 16 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 17 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 18 C -0.51 -14.30 8.56 -34.44 -0.29 -14.60 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 22 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 C 0.08 1.83 3.88 -3.79 -0.01 1.81 16 27 C -0.18 -2.67 8.88 -39.23 -0.35 -3.01 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.12 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.12 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.07 1.04 6.68 -51.93 -0.35 0.69 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 2.49 6.15 -51.93 -0.32 2.17 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 45 H 0.07 1.71 7.72 -51.93 -0.40 1.31 16 46 H 0.13 1.77 7.16 -52.49 -0.38 1.39 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -32.61 374.65 -10.27 -42.88 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.32 Total: 0.10 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.59 Total: -9.14 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.29 Total: -44.77 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.70 Total: -11.31 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.61 -10.27 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.544 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds