Wall clock time and date at job start Tue Mar 31 2020 12:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99836 * 2 1 4 4 N 1.34773 * 120.00053 * 180.02562 * 2 1 3 5 5 C 1.46507 * 120.00015 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47304 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47304 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47304 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47245 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99821 * 180.02562 * 10 9 8 12 12 O 1.21544 * 119.99932 * 359.97438 * 11 10 9 13 13 C 1.47887 * 119.99821 * 179.97438 * 11 10 9 14 14 C 1.39922 * 120.02762 * 359.97438 * 13 11 10 15 15 C 1.38324 * 120.35956 * 180.02562 * 14 13 11 16 16 C 1.37743 * 120.41166 * 359.97438 * 15 14 13 17 17 C 1.40753 * 120.04404 * 0.02562 * 16 15 14 18 18 C 1.41428 * 120.18094 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00377 * 24.37846 * 18 17 16 20 20 C 1.39938 * 120.00012 * 204.38668 * 18 17 16 21 21 N 1.30825 * 119.99869 * 17.84278 * 20 18 17 22 22 Si 1.86804 * 120.00158 * 197.84304 * 20 18 17 23 23 H 1.48505 * 109.46701 * 94.69079 * 22 20 18 24 24 H 1.48499 * 109.47242 * 214.69090 * 22 20 18 25 25 H 1.48500 * 109.47130 * 334.69434 * 22 20 18 26 26 C 1.38993 * 120.02489 * 179.97438 * 13 11 10 27 27 H 1.08992 * 109.47236 * 269.99751 * 1 2 3 28 28 H 1.08999 * 109.47532 * 29.99921 * 1 2 3 29 29 H 1.09000 * 109.46970 * 149.99596 * 1 2 3 30 30 H 0.97001 * 120.00161 * 359.97438 * 4 2 1 31 31 H 1.09003 * 109.46919 * 59.99549 * 5 4 2 32 32 H 1.09000 * 109.46863 * 300.00229 * 5 4 2 33 33 H 1.09003 * 109.47240 * 60.00124 * 6 5 4 34 34 H 1.08996 * 109.47289 * 299.99852 * 6 5 4 35 35 H 1.09003 * 109.46885 * 59.99889 * 7 6 5 36 36 H 1.09000 * 109.46800 * 300.00630 * 7 6 5 37 37 H 1.09003 * 109.47240 * 60.00107 * 8 7 6 38 38 H 1.08996 * 109.47289 * 299.99835 * 8 7 6 39 39 H 1.09003 * 109.46885 * 59.99889 * 9 8 7 40 40 H 1.09000 * 109.46800 * 300.00630 * 9 8 7 41 41 H 0.97004 * 120.00039 * 359.97438 * 10 9 8 42 42 H 1.08009 * 119.81952 * 0.02562 * 14 13 11 43 43 H 1.08004 * 119.79125 * 180.02562 * 15 14 13 44 44 H 1.08004 * 119.98157 * 179.97438 * 16 15 14 45 45 H 0.97002 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.19965 * 359.70686 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1559 -2.6096 -0.0010 7 6 5.6859 -2.6096 -0.0009 8 6 6.1960 -4.0520 -0.0014 9 6 7.7260 -4.0520 -0.0007 10 7 8.2143 -5.4332 -0.0018 11 6 9.5395 -5.6794 -0.0010 12 8 10.3292 -4.7555 0.0003 13 6 10.0324 -7.0737 -0.0015 14 6 9.1237 -8.1377 -0.0024 15 6 9.5772 -9.4444 -0.0024 16 6 10.9281 -9.7137 -0.0020 17 6 11.8574 -8.6565 -0.0011 18 6 13.2450 -8.9296 -0.0013 19 1 13.6104 -9.8695 -0.3881 20 6 14.1447 -7.9822 0.4999 21 7 13.7159 -7.0181 1.2734 22 14 15.9578 -8.0939 0.0645 23 1 16.2393 -7.2284 -1.1090 24 1 16.7732 -7.6415 1.2202 25 1 16.3022 -9.5006 -0.2640 26 6 11.3988 -7.3283 -0.0011 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6959 -2.0072 -0.0005 31 1 4.0095 -0.6534 0.8889 32 1 4.0088 -0.6531 -0.8911 33 1 3.7923 -3.1236 -0.8907 34 1 3.7930 -3.1232 0.8892 35 1 6.0492 -2.0957 0.8891 36 1 6.0493 -2.0957 -0.8909 37 1 5.8327 -4.5656 -0.8916 38 1 5.8327 -4.5662 0.8883 39 1 8.0889 -3.5386 0.8897 40 1 8.0897 -3.5376 -0.8902 41 1 7.5840 -6.1705 -0.0025 42 1 8.0623 -7.9375 -0.0031 43 1 8.8677 -10.2587 -0.0035 44 1 11.2745 -10.7367 -0.0016 45 1 14.3396 -6.3616 1.6212 46 1 12.1039 -6.5102 -0.0052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:00 Heat of formation + Delta-G solvation = -86.351842 kcal Electronic energy + Delta-G solvation = -24514.016492 eV Core-core repulsion = 20787.926364 eV Total energy + Delta-G solvation = -3726.090128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.95490 -39.21698 -37.21659 -36.69374 -35.15079 -33.80509 -33.36646 -31.17144 -30.21671 -29.45879 -28.97564 -25.73924 -25.13738 -22.80097 -21.76590 -21.63985 -20.89144 -20.79138 -19.42202 -17.72219 -17.19141 -16.52304 -16.47284 -16.19299 -15.70640 -15.48013 -15.04289 -14.79983 -14.64749 -14.00595 -13.80014 -13.78850 -13.27483 -13.21278 -12.97490 -12.86295 -12.72562 -12.50699 -12.36813 -12.30541 -11.67470 -11.49140 -11.47306 -11.34264 -11.17586 -11.09085 -10.86516 -10.72732 -10.50078 -10.29184 -10.02555 -9.69983 -9.51330 -9.22927 -9.02023 -8.65863 -7.64001 -7.53402 -6.81020 -4.42435 2.20595 2.23752 2.79404 2.80577 3.07482 3.11081 3.14957 3.66866 3.87016 3.91648 4.34347 4.45165 4.52277 4.63219 4.63305 4.75553 4.89437 4.94589 5.07864 5.18242 5.32265 5.36073 5.39521 5.53214 5.59482 5.59605 5.69166 5.72716 5.89462 5.99936 6.04998 6.06119 6.14802 6.25935 6.70977 6.86493 6.98089 7.01100 7.05659 7.20393 7.37140 7.69162 7.75060 7.80396 7.91798 8.09138 8.18552 8.49862 8.79343 8.82591 8.95633 10.13690 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.001677 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.944509 B =16696.957738 C =17526.870260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.732 5.732 5 C 0.115 3.885 6 C -0.130 4.130 7 C -0.114 4.114 8 C -0.129 4.129 9 C 0.120 3.880 10 N -0.739 5.739 11 C 0.563 3.437 12 O -0.547 6.547 13 C -0.129 4.129 14 C -0.219 4.219 15 C -0.098 4.098 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.092 4.092 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.401 0.599 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.285 0.715 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 6.922 -1.696 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.425 6.425 4 N -0.385 5.385 5 C -0.009 4.009 6 C -0.168 4.168 7 C -0.153 4.153 8 C -0.167 4.167 9 C -0.004 4.004 10 N -0.393 5.393 11 C 0.353 3.647 12 O -0.425 6.425 13 C -0.132 4.132 14 C -0.239 4.239 15 C -0.116 4.116 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.112 4.112 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.234 0.766 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.000 8.581 -1.542 22.738 hybrid contribution 0.178 -0.840 -0.031 0.859 sum -20.822 7.741 -1.573 22.271 Atomic orbital electron populations 1.21886 0.91625 1.04927 1.04827 1.20854 0.90695 0.83495 0.75553 1.90744 1.70890 1.31468 1.49426 1.46143 1.07739 1.08801 1.75827 1.21429 0.79276 0.97503 1.02681 1.21794 0.96632 0.95407 1.02926 1.21403 0.93849 0.96771 1.03233 1.21775 0.94943 0.97187 1.02819 1.21230 0.92857 0.84166 1.02137 1.45953 1.07683 1.07878 1.77759 1.18854 0.81211 0.89998 0.74618 1.90695 1.55449 1.46430 1.49885 1.19489 0.95217 0.90212 1.08285 1.20328 0.96060 0.92638 1.14883 1.20427 0.95251 0.94995 1.00917 1.21095 0.92595 0.97769 1.11812 1.17608 0.93332 0.90732 0.88745 1.19609 0.90784 1.02579 1.35890 0.90032 1.25974 1.01898 0.94109 0.92640 1.69794 1.37879 1.11572 1.21439 0.86255 0.81331 0.79808 0.79110 1.19196 1.20183 1.18510 1.21637 0.92443 0.97921 0.99212 0.88818 0.88859 0.90161 0.76456 0.91339 0.91321 0.91122 0.91119 0.91132 0.91155 0.91232 0.91221 0.91879 0.91920 0.76633 0.89277 0.88922 0.88618 0.90422 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.30 36.00 0.37 -0.30 16 2 C 0.51 4.13 7.94 -10.99 -0.09 4.04 16 3 O -0.55 -7.25 17.10 5.56 0.10 -7.15 16 4 N -0.73 -4.40 5.56 -60.29 -0.33 -4.74 16 5 C 0.11 0.81 5.67 -4.04 -0.02 0.79 16 6 C -0.13 -0.72 5.33 -26.73 -0.14 -0.86 16 7 C -0.11 -0.82 5.21 -26.73 -0.14 -0.96 16 8 C -0.13 -1.11 5.33 -26.73 -0.14 -1.26 16 9 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 10 N -0.74 -11.95 5.51 -61.24 -0.34 -12.28 16 11 C 0.56 12.34 7.77 -12.31 -0.10 12.24 16 12 O -0.55 -13.86 16.33 5.33 0.09 -13.77 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 15 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 16 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 17 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 18 C -0.46 -12.07 9.05 -37.73 -0.34 -12.41 16 19 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.79 10.96 55.55 0.61 -20.18 16 22 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.09 -2.46 8.23 -38.44 -0.32 -2.78 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.40 1.19 8.47 -40.82 -0.35 0.84 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.40 5.46 6.49 -40.82 -0.26 5.20 16 42 H 0.09 1.50 6.38 -52.48 -0.33 1.17 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 46 H 0.13 3.86 5.75 -52.49 -0.30 3.56 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -33.76 388.05 -9.59 -43.35 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.14 Total: 7.79 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.39 Total: -12.62 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.06 Total: -37.21 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.18 Total: -20.92 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.76 -9.59 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.001 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds