Wall clock time and date at job start Tue Mar 31 2020 12:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99836 * 2 1 4 4 N 1.34773 * 120.00053 * 180.02562 * 2 1 3 5 5 C 1.46507 * 120.00015 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47207 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47304 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47304 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47304 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47245 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99821 * 180.02562 * 10 9 8 12 12 O 1.21544 * 119.99932 * 359.97438 * 11 10 9 13 13 C 1.47887 * 119.99821 * 179.97438 * 11 10 9 14 14 C 1.39922 * 120.02762 * 359.97438 * 13 11 10 15 15 C 1.38324 * 120.35956 * 180.02562 * 14 13 11 16 16 C 1.37743 * 120.41166 * 359.97438 * 15 14 13 17 17 C 1.40753 * 120.04404 * 0.02562 * 16 15 14 18 18 C 1.41428 * 120.18094 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00377 * 24.37846 * 18 17 16 20 20 C 1.39938 * 120.00012 * 204.38668 * 18 17 16 21 21 N 1.30825 * 119.99869 * 17.84278 * 20 18 17 22 22 Si 1.86804 * 120.00158 * 197.84304 * 20 18 17 23 23 H 1.48505 * 109.46701 * 94.69079 * 22 20 18 24 24 H 1.48499 * 109.47242 * 214.69090 * 22 20 18 25 25 H 1.48500 * 109.47130 * 334.69434 * 22 20 18 26 26 C 1.38993 * 120.02489 * 179.97438 * 13 11 10 27 27 H 1.08992 * 109.47236 * 269.99751 * 1 2 3 28 28 H 1.08999 * 109.47532 * 29.99921 * 1 2 3 29 29 H 1.09000 * 109.46970 * 149.99596 * 1 2 3 30 30 H 0.97001 * 120.00161 * 359.97438 * 4 2 1 31 31 H 1.09003 * 109.46919 * 59.99549 * 5 4 2 32 32 H 1.09000 * 109.46863 * 300.00229 * 5 4 2 33 33 H 1.09003 * 109.47240 * 60.00124 * 6 5 4 34 34 H 1.08996 * 109.47289 * 299.99852 * 6 5 4 35 35 H 1.09003 * 109.46885 * 59.99889 * 7 6 5 36 36 H 1.09000 * 109.46800 * 300.00630 * 7 6 5 37 37 H 1.09003 * 109.47240 * 60.00107 * 8 7 6 38 38 H 1.08996 * 109.47289 * 299.99835 * 8 7 6 39 39 H 1.09003 * 109.46885 * 59.99889 * 9 8 7 40 40 H 1.09000 * 109.46800 * 300.00630 * 9 8 7 41 41 H 0.97004 * 120.00039 * 359.97438 * 10 9 8 42 42 H 1.08009 * 119.81952 * 0.02562 * 14 13 11 43 43 H 1.08004 * 119.79125 * 180.02562 * 15 14 13 44 44 H 1.08004 * 119.98157 * 179.97438 * 16 15 14 45 45 H 0.97002 * 120.00058 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.19965 * 359.70686 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1559 -2.6096 -0.0010 7 6 5.6859 -2.6096 -0.0009 8 6 6.1960 -4.0520 -0.0014 9 6 7.7260 -4.0520 -0.0007 10 7 8.2143 -5.4332 -0.0018 11 6 9.5395 -5.6794 -0.0010 12 8 10.3292 -4.7555 0.0003 13 6 10.0324 -7.0737 -0.0015 14 6 9.1237 -8.1377 -0.0024 15 6 9.5772 -9.4444 -0.0024 16 6 10.9281 -9.7137 -0.0020 17 6 11.8574 -8.6565 -0.0011 18 6 13.2450 -8.9296 -0.0013 19 1 13.6104 -9.8695 -0.3881 20 6 14.1447 -7.9822 0.4999 21 7 13.7159 -7.0181 1.2734 22 14 15.9578 -8.0939 0.0645 23 1 16.2393 -7.2284 -1.1090 24 1 16.7732 -7.6415 1.2202 25 1 16.3022 -9.5006 -0.2640 26 6 11.3988 -7.3283 -0.0011 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6959 -2.0072 -0.0005 31 1 4.0095 -0.6534 0.8889 32 1 4.0088 -0.6531 -0.8911 33 1 3.7923 -3.1236 -0.8907 34 1 3.7930 -3.1232 0.8892 35 1 6.0492 -2.0957 0.8891 36 1 6.0493 -2.0957 -0.8909 37 1 5.8327 -4.5656 -0.8916 38 1 5.8327 -4.5662 0.8883 39 1 8.0889 -3.5386 0.8897 40 1 8.0897 -3.5376 -0.8902 41 1 7.5840 -6.1705 -0.0025 42 1 8.0623 -7.9375 -0.0031 43 1 8.8677 -10.2587 -0.0035 44 1 11.2745 -10.7367 -0.0016 45 1 14.3396 -6.3616 1.6212 46 1 12.1039 -6.5102 -0.0052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:59 Heat of formation + Delta-G solvation = -109.666861 kcal Electronic energy + Delta-G solvation = -24515.027507 eV Core-core repulsion = 20787.926364 eV Total energy + Delta-G solvation = -3727.101143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89642 -40.59163 -38.87350 -37.59781 -36.20795 -35.59992 -34.42431 -32.33428 -31.42514 -31.23565 -29.76271 -27.28827 -26.40160 -24.11722 -22.95234 -22.56379 -22.36798 -21.49226 -20.97799 -19.47566 -17.97265 -17.72091 -17.20986 -17.16795 -16.95845 -16.70690 -16.53025 -16.38227 -15.79735 -15.38490 -15.04443 -14.88704 -14.61428 -14.43437 -14.26714 -13.86881 -13.66157 -13.44554 -13.38942 -13.05075 -12.96991 -12.93287 -12.81269 -12.52782 -12.22362 -12.18363 -12.15842 -12.04093 -11.88098 -11.49618 -11.47207 -11.09020 -10.99498 -10.76612 -10.14095 -10.12294 -9.46756 -9.38153 -8.67112 -6.38535 0.38264 1.00963 1.35863 1.47590 1.50715 1.63449 2.10346 2.18685 2.21478 2.37746 2.78649 3.70226 3.79265 3.87679 3.96893 3.98686 4.10339 4.21556 4.41925 4.43112 4.49915 4.55438 4.59497 4.60904 4.68374 4.76886 4.82820 4.90004 4.94931 5.03310 5.07642 5.09266 5.16953 5.20277 5.31582 5.37431 5.40243 5.46675 5.50306 5.53729 5.87212 5.92942 6.05716 6.29137 6.52345 6.58759 6.70689 6.87748 6.94949 7.27595 7.32809 8.29718 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.001677 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.944509 B =16696.957738 C =17526.870260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.719 5.719 5 C 0.114 3.886 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.114 4.114 9 C 0.115 3.885 10 N -0.712 5.712 11 C 0.557 3.443 12 O -0.593 6.593 13 C -0.141 4.141 14 C -0.196 4.196 15 C -0.095 4.095 16 C -0.217 4.217 17 C 0.066 3.934 18 C -0.498 4.498 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.268 1.268 24 H -0.269 1.269 25 H -0.249 1.249 26 C -0.132 4.132 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.419 0.581 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.415 0.585 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.109 0.891 45 H 0.286 0.714 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.624 4.921 -2.033 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.287 3.713 3 O -0.492 6.492 4 N -0.372 5.372 5 C -0.010 4.010 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.152 4.152 9 C -0.009 4.009 10 N -0.365 5.365 11 C 0.347 3.653 12 O -0.475 6.475 13 C -0.145 4.145 14 C -0.215 4.215 15 C -0.113 4.113 16 C -0.237 4.237 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.803 3.197 23 H -0.193 1.193 24 H -0.194 1.194 25 H -0.172 1.172 26 C -0.153 4.153 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.257 0.743 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.253 0.747 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.127 0.873 45 H 0.097 0.903 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.608 6.506 -1.880 25.523 hybrid contribution 1.030 -0.246 0.061 1.061 sum -23.578 6.260 -1.819 24.462 Atomic orbital electron populations 1.21899 0.88104 1.06229 1.06164 1.21689 0.92476 0.82937 0.74221 1.90717 1.72382 1.33646 1.52411 1.46063 1.07370 1.09284 1.74442 1.21347 0.80067 0.98463 1.01170 1.21662 0.94965 0.94225 1.04393 1.21383 0.95236 0.95847 1.02821 1.21695 0.90845 0.98280 1.04382 1.21471 0.96228 0.82044 1.01117 1.45754 1.05730 1.09909 1.75150 1.18791 0.82865 0.88951 0.74740 1.90671 1.57167 1.47409 1.52283 1.19821 0.94730 0.92252 1.07670 1.20876 0.98050 0.91630 1.10957 1.20941 0.94901 0.96575 0.98900 1.21423 0.93745 0.97691 1.10873 1.17956 0.94348 0.91468 0.89870 1.19882 0.91670 1.03472 1.37690 0.89765 1.26862 1.06442 0.93380 0.91906 1.69897 1.39407 1.12766 1.23109 0.85181 0.75574 0.80183 0.78732 1.19273 1.19367 1.17234 1.21437 0.93616 0.97279 1.02950 0.87301 0.89322 0.87095 0.74298 0.93027 0.92938 0.89522 0.89628 0.91790 0.91663 0.89496 0.89688 0.93177 0.92910 0.74712 0.84199 0.84135 0.87336 0.90348 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.30 71.23 0.73 -0.17 16 2 C 0.50 7.64 7.94 87.66 0.70 8.34 16 3 O -0.61 -16.60 17.10 -3.03 -0.05 -16.65 16 4 N -0.72 -7.28 5.56 -463.06 -2.57 -9.85 16 5 C 0.11 1.49 5.67 86.38 0.49 1.98 16 6 C -0.11 -0.92 5.33 30.59 0.16 -0.76 16 7 C -0.11 -1.40 5.21 30.59 0.16 -1.24 16 8 C -0.11 -1.58 5.33 30.59 0.16 -1.42 16 9 C 0.11 2.86 5.67 86.38 0.49 3.35 16 10 N -0.71 -21.55 5.51 -465.93 -2.57 -24.11 16 11 C 0.56 24.51 7.77 86.80 0.67 25.19 16 12 O -0.59 -31.47 16.33 -3.85 -0.06 -31.53 16 13 C -0.14 -6.67 5.87 -20.13 -0.12 -6.79 16 14 C -0.20 -7.44 9.55 22.70 0.22 -7.23 16 15 C -0.10 -3.67 10.01 22.17 0.22 -3.45 16 16 C -0.22 -10.07 9.78 22.77 0.22 -9.85 16 17 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 18 C -0.50 -27.28 9.05 23.47 0.21 -27.06 16 19 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 20 C 0.03 1.53 5.14 85.25 0.44 1.96 16 21 N -0.83 -46.69 10.96 21.82 0.24 -46.45 16 22 Si 0.98 40.03 29.60 68.60 2.03 42.06 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 27 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.42 1.09 8.47 -92.71 -0.79 0.30 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.41 9.58 6.49 -92.71 -0.60 8.98 16 42 H 0.14 3.85 6.38 -2.91 -0.02 3.84 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 46 H 0.10 6.04 5.75 -2.91 -0.02 6.02 16 Total: -1.00 -81.41 388.05 1.46 -79.95 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.39 Total: 27.49 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.83 Total: -20.90 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -4.90 Total: -80.42 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.11 Total: -48.18 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -81.41 1.46 -79.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.713 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds