Wall clock time and date at job start Tue Mar 31 2020 12:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 O 1.42905 * 109.47122 * 119.99736 * 2 1 3 5 5 C 1.35651 * 116.99710 * 154.95111 * 4 2 1 6 6 C 1.39340 * 120.53972 * 5.54675 * 5 4 2 7 7 C 1.38299 * 118.43751 * 179.72190 * 6 5 4 8 8 C 1.38767 * 119.44832 * 0.25779 * 7 6 5 9 9 N 1.31374 * 121.06303 * 0.02562 * 8 7 6 10 10 C 1.32852 * 121.69936 * 359.97438 * 9 8 7 11 11 C 1.47831 * 119.78646 * 179.97438 * 10 9 8 12 12 O 1.21561 * 120.00052 * 180.02562 * 11 10 9 13 13 N 1.34772 * 119.99778 * 0.02562 * 11 10 9 14 14 C 1.46503 * 119.99858 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.41151 * 35.14387 * 14 13 11 16 16 C 1.52959 * 109.41383 * 155.00077 * 14 13 11 17 17 C 1.53227 * 109.40618 * 183.70183 * 16 14 13 18 18 C 1.51264 * 108.54075 * 305.37545 * 17 16 14 19 19 C 1.37874 * 120.85424 * 231.32185 * 18 17 16 20 20 N 1.31514 * 119.99584 * 0.02562 * 19 18 17 21 21 Si 1.86802 * 120.00347 * 179.97438 * 19 18 17 22 22 H 1.48497 * 109.46703 * 60.00121 * 21 19 18 23 23 H 1.48496 * 109.47069 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47081 * 300.00090 * 21 19 18 25 25 C 1.51271 * 118.29941 * 51.34467 * 18 17 16 26 26 C 1.52961 * 109.41470 * 275.35588 * 14 13 11 27 27 H 1.09005 * 109.46663 * 299.99855 * 1 2 3 28 28 H 1.09000 * 109.47058 * 59.99606 * 1 2 3 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46951 * 239.99719 * 2 1 3 31 31 H 1.09001 * 109.47467 * 60.00035 * 3 2 1 32 32 H 1.09001 * 109.47008 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46982 * 300.00096 * 3 2 1 34 34 H 1.08001 * 120.78515 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.27529 * 180.23106 * 7 6 5 36 36 H 1.08004 * 119.47042 * 179.97438 * 8 7 6 37 37 H 0.96996 * 120.00568 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.48322 * 303.68945 * 16 14 13 39 39 H 1.09000 * 109.48057 * 63.72769 * 16 14 13 40 40 H 1.08997 * 109.62207 * 65.09065 * 17 16 14 41 41 H 1.09000 * 109.62843 * 185.46580 * 17 16 14 42 42 H 0.97001 * 120.00115 * 180.02562 * 20 19 18 43 43 H 1.09007 * 109.62614 * 68.36620 * 25 18 17 44 44 H 1.08998 * 109.62721 * 188.93880 * 25 18 17 45 45 H 1.09007 * 109.48148 * 296.27520 * 26 14 13 46 46 H 1.08995 * 109.48107 * 56.31685 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2440 -1.2246 1.0977 6 6 4.0447 -1.0282 -0.0257 7 6 5.3014 -1.6052 -0.0477 8 6 5.7242 -2.3609 1.0366 9 7 4.9499 -2.5374 2.0831 10 6 3.7352 -2.0035 2.1507 11 6 2.8992 -2.2299 3.3487 12 8 1.7870 -1.7436 3.4145 13 7 3.3702 -2.9753 4.3680 14 6 2.5419 -3.1991 5.5555 15 1 1.4961 -3.2774 5.2583 16 6 2.9745 -4.4968 6.2399 17 6 2.0490 -4.7789 7.4280 18 6 2.0463 -3.5675 8.3338 19 6 2.2869 -3.6947 9.6854 20 7 2.5232 -4.8806 10.2024 21 14 2.2787 -2.1824 10.7821 22 1 0.9467 -1.5295 10.7147 23 1 2.5628 -2.5853 12.1828 24 1 3.3206 -1.2304 10.3203 25 6 1.7724 -2.2128 7.7189 26 6 2.7081 -2.0237 6.5202 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.6941 -0.4353 -0.8575 35 1 5.9481 -1.4691 -0.9019 36 1 6.7054 -2.8120 1.0196 37 1 4.2578 -3.3629 4.3157 38 1 2.9144 -5.3205 5.5285 39 1 4.0004 -4.3965 6.5941 40 1 1.0380 -4.9687 7.0675 41 1 2.4114 -5.6486 7.9761 42 1 2.6921 -4.9702 11.1534 43 1 0.7358 -2.1650 7.3852 44 1 1.9591 -1.4317 8.4558 45 1 3.7404 -1.9819 6.8678 46 1 2.4589 -1.0947 6.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199241190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:08 Heat of formation + Delta-G solvation = -76.283753 kcal Electronic energy + Delta-G solvation = -26977.306677 eV Core-core repulsion = 23251.653134 eV Total energy + Delta-G solvation = -3725.653543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02049 -40.47629 -39.46165 -38.34340 -35.37791 -34.26815 -33.76493 -32.99144 -31.52977 -31.29716 -29.06400 -28.23876 -25.85090 -24.85285 -23.82975 -23.30421 -22.22808 -21.50979 -21.27903 -19.50781 -18.81240 -18.04842 -17.82092 -16.84335 -16.71344 -16.43351 -16.24448 -15.87897 -15.51093 -15.24313 -15.08592 -14.90425 -14.58639 -14.43501 -14.05574 -13.95974 -13.90670 -13.44941 -13.44079 -13.29803 -13.15276 -12.82596 -12.80109 -12.66477 -12.56173 -12.02876 -11.99871 -11.85431 -11.77411 -11.61431 -11.25776 -10.92822 -10.79612 -10.73887 -10.57319 -10.48713 -9.92608 -9.45295 -8.18459 -6.12525 -0.33817 0.23996 1.38995 1.39763 1.48126 1.81072 2.07408 2.19596 2.40082 2.85441 3.08688 3.25481 3.57746 3.73463 3.79354 3.94041 3.99682 4.05640 4.12634 4.14888 4.20163 4.46894 4.50618 4.65435 4.67680 4.75034 4.78131 4.82313 4.83295 4.91072 4.93619 5.00352 5.05013 5.12848 5.16751 5.20881 5.21407 5.24026 5.47522 5.51746 5.56695 5.68031 5.74544 5.80180 6.30242 6.33785 6.55168 6.87347 6.91817 7.29868 7.45375 8.92391 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.003152 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.266065 B = 8880.848922 C = 9649.701455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 C -0.175 4.175 4 O -0.301 6.301 5 C 0.128 3.872 6 C -0.174 4.174 7 C -0.085 4.085 8 C 0.052 3.948 9 N -0.441 5.441 10 C 0.003 3.997 11 C 0.560 3.440 12 O -0.560 6.560 13 N -0.701 5.701 14 C 0.167 3.833 15 H 0.057 0.943 16 C -0.100 4.100 17 C 0.011 3.989 18 C -0.502 4.502 19 C 0.028 3.972 20 N -0.926 5.926 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.009 4.009 26 C -0.105 4.105 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.198 0.802 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.056 0.944 40 H -0.002 1.002 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.015 0.985 44 H 0.028 0.972 45 H 0.053 0.947 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 10.110 -27.923 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.003 3.997 3 C -0.232 4.232 4 O -0.212 6.212 5 C 0.077 3.923 6 C -0.200 4.200 7 C -0.105 4.105 8 C -0.110 4.110 9 N -0.154 5.154 10 C -0.133 4.133 11 C 0.346 3.654 12 O -0.438 6.438 13 N -0.351 5.351 14 C 0.063 3.937 15 H 0.075 0.925 16 C -0.138 4.138 17 C -0.027 4.027 18 C -0.521 4.521 19 C -0.171 4.171 20 N -0.566 5.566 21 Si 0.768 3.232 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.047 4.047 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.195 0.805 35 H 0.208 0.792 36 H 0.215 0.785 37 H 0.249 0.751 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.983 9.874 -26.796 29.177 hybrid contribution -0.087 0.754 0.455 0.885 sum 5.895 10.629 -26.341 29.010 Atomic orbital electron populations 1.21875 0.91978 1.02852 1.03717 1.22950 0.96382 0.93562 0.86816 1.22374 1.02004 0.94886 1.03948 1.86479 1.28026 1.66670 1.40011 1.20251 0.86332 0.91314 0.94432 1.22173 0.95714 1.04256 0.97892 1.22743 0.95027 0.92618 1.00098 1.23432 1.00554 0.98302 0.88747 1.67543 1.02178 1.17884 1.27746 1.20422 0.94017 1.03408 0.95490 1.18207 0.85716 0.78659 0.82832 1.90782 1.21013 1.50952 1.81088 1.45998 1.20401 1.51727 1.17001 1.20674 0.94007 0.95649 0.83391 0.92511 1.21700 1.00348 0.94516 0.97252 1.19280 0.93722 0.96894 0.92787 1.20557 1.46361 0.92486 0.92689 1.25532 0.94683 0.98188 0.98696 1.69938 1.49344 1.24196 1.13122 0.85833 0.79226 0.80524 0.77662 1.19543 1.21525 1.19161 1.19594 0.95352 0.95472 0.94309 1.21775 1.00101 0.96202 0.96286 0.93037 0.87284 0.92788 0.88585 0.93070 0.91661 0.87917 0.80531 0.79185 0.78545 0.75126 0.92479 0.92520 0.98361 0.94506 0.92601 0.96620 0.95350 0.92809 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.56 71.98 0.69 -1.78 16 2 C 0.06 1.01 2.85 30.60 0.09 1.09 16 3 C -0.17 -2.33 9.19 71.98 0.66 -1.67 16 4 O -0.30 -8.58 7.86 -68.67 -0.54 -9.12 16 5 C 0.13 3.31 6.62 22.93 0.15 3.47 16 6 C -0.17 -2.61 8.34 22.55 0.19 -2.42 16 7 C -0.09 -0.91 10.10 22.41 0.23 -0.68 16 8 C 0.05 0.82 11.17 84.89 0.95 1.77 16 9 N -0.44 -11.31 9.54 -184.63 -1.76 -13.07 16 10 C 0.00 0.09 6.76 41.93 0.28 0.37 16 11 C 0.56 21.78 7.76 86.78 0.67 22.45 16 12 O -0.56 -25.59 14.80 17.08 0.25 -25.34 16 13 N -0.70 -26.31 5.06 -445.54 -2.26 -28.57 16 14 C 0.17 7.19 2.35 44.96 0.11 7.30 16 15 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 16 C -0.10 -4.35 5.40 30.66 0.17 -4.19 16 17 C 0.01 0.58 5.96 30.10 0.18 0.76 16 18 C -0.50 -27.63 5.51 -16.17 -0.09 -27.72 16 19 C 0.03 1.57 5.46 84.65 0.46 2.03 16 20 N -0.93 -55.15 12.73 21.45 0.27 -54.88 16 21 Si 0.94 45.07 26.80 68.60 1.84 46.91 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 25 C -0.01 -0.46 5.59 30.11 0.17 -0.29 16 26 C -0.10 -4.75 5.50 30.66 0.17 -4.58 16 27 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.12 6.35 -2.39 -0.02 1.10 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.80 6.94 -2.39 -0.02 0.78 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.18 1.42 5.60 -2.91 -0.02 1.41 16 35 H 0.19 0.19 8.06 -2.91 -0.02 0.17 16 36 H 0.20 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.41 13.73 7.93 -92.71 -0.73 12.99 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.04 2.07 7.08 -2.39 -0.02 2.06 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.03 1.37 5.17 -2.39 -0.01 1.36 16 45 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.41 366.88 3.14 -72.28 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.26 Total: 15.88 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.07 Total: -4.09 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.74 Total: -96.52 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.29 Total: -34.46 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.84 Total: 46.91 kcal Total: -75.41 3.14 -72.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199241190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.006 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds