Wall clock time and date at job start Tue Mar 31 2020 12:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46959 * 2 1 4 4 C 1.34672 * 116.99848 * 180.02562 * 3 2 1 5 5 O 1.21425 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.48046 * 120.00036 * 180.02562 * 4 3 2 7 7 C 1.39883 * 120.92780 * 0.02562 * 6 4 3 8 8 C 1.38129 * 118.99652 * 180.02562 * 7 6 4 9 9 N 1.31825 * 120.90191 * 359.97438 * 8 7 6 10 10 C 1.31794 * 122.06166 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.54913 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.46965 * 274.99626 * 11 10 9 13 13 C 1.46850 * 110.99915 * 45.78965 * 12 11 10 14 14 C 1.53032 * 109.52098 * 185.84118 * 13 12 11 15 15 C 1.53119 * 109.28205 * 300.81949 * 14 13 12 16 16 C 1.53124 * 109.15796 * 57.65213 * 15 14 13 17 17 H 1.09000 * 109.49712 * 62.29080 * 16 15 14 18 18 C 1.50700 * 109.50308 * 182.40756 * 16 15 14 19 19 H 1.07994 * 120.00077 * 119.80427 * 18 16 15 20 20 C 1.37880 * 119.99690 * 299.80760 * 18 16 15 21 21 N 1.31514 * 120.00430 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99703 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47134 * 119.99920 * 22 20 18 25 25 H 1.48504 * 109.47221 * 239.99865 * 22 20 18 26 26 C 1.46844 * 110.99887 * 170.00048 * 12 11 10 27 27 C 1.38172 * 120.89913 * 0.27047 * 10 9 8 28 28 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46997 * 299.99900 * 1 2 3 30 30 H 1.08995 * 109.47161 * 59.99797 * 1 2 3 31 31 H 1.08997 * 109.46997 * 240.00099 * 2 1 3 32 32 H 1.08995 * 109.47161 * 120.00202 * 2 1 3 33 33 H 1.07998 * 120.49939 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.54455 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47133 * 154.99664 * 11 10 9 36 36 H 1.08996 * 109.47320 * 34.99404 * 11 10 9 37 37 H 1.09005 * 109.46314 * 305.85713 * 13 12 11 38 38 H 1.08998 * 109.46244 * 65.82281 * 13 12 11 39 39 H 1.09004 * 109.50441 * 180.87586 * 14 13 12 40 40 H 1.09002 * 109.53781 * 60.78566 * 14 13 12 41 41 H 1.09001 * 109.51997 * 297.75401 * 15 14 13 42 42 H 1.08995 * 109.57988 * 177.59198 * 15 14 13 43 43 H 0.96998 * 119.99941 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.46267 * 294.17336 * 26 12 11 45 45 H 1.08993 * 109.46596 * 54.14593 * 26 12 11 46 46 H 1.08001 * 120.50308 * 179.73131 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3491 1.5454 -0.0005 5 8 4.0888 0.5825 -0.0005 6 6 3.9150 2.9135 0.0000 7 6 3.0809 4.0365 0.0016 8 6 3.6516 5.2943 0.0015 9 7 4.9614 5.4436 0.0005 10 6 5.7829 4.4130 -0.0011 11 6 7.2713 4.6491 -0.0016 12 7 7.7353 4.8463 -1.3815 13 6 6.8535 5.7703 -2.1061 14 6 7.2800 5.8387 -3.5742 15 6 8.7318 6.3184 -3.6571 16 6 9.6224 5.3661 -2.8542 17 1 9.5767 4.3691 -3.2924 18 6 11.0445 5.8640 -2.8816 19 1 11.5460 6.1164 -1.9591 20 6 11.7051 5.9974 -4.0844 21 7 11.0945 5.6896 -5.2078 22 14 13.4682 6.6138 -4.1182 23 1 13.9233 6.8882 -2.7316 24 1 14.3419 5.5814 -4.7314 25 1 13.5407 7.8626 -4.9187 26 6 9.1279 5.3114 -1.4070 27 6 5.2981 3.1191 -0.0072 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0071 3.9217 0.0021 34 1 3.0160 6.1675 0.0023 35 1 7.7763 3.7857 0.4315 36 1 7.4987 5.5368 0.5885 37 1 5.8248 5.4154 -2.0430 38 1 6.9230 6.7629 -1.6611 39 1 6.6351 6.5365 -4.1085 40 1 7.1974 4.8494 -4.0243 41 1 8.8073 7.3239 -3.2430 42 1 9.0544 6.3281 -4.6982 43 1 11.5595 5.7831 -6.0539 44 1 9.1868 6.3061 -0.9653 45 1 9.7512 4.6232 -0.8361 46 1 5.9772 2.2793 -0.0128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233326272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:36 Heat of formation + Delta-G solvation = -50.256807 kcal Electronic energy + Delta-G solvation = -26315.705726 eV Core-core repulsion = 22591.180797 eV Total energy + Delta-G solvation = -3724.524930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12153 -40.08514 -37.99017 -36.94991 -34.23787 -33.08052 -32.29894 -31.90887 -30.83994 -29.72169 -26.56220 -25.58150 -24.90546 -23.28836 -23.14788 -21.94112 -21.42143 -20.63425 -18.56193 -18.20392 -17.32892 -16.93091 -16.42155 -16.25207 -15.88677 -15.40173 -15.09616 -14.61124 -14.50513 -14.09676 -13.83678 -13.57055 -13.48789 -13.23298 -13.13306 -12.93998 -12.43363 -12.37459 -12.16441 -12.00473 -11.80240 -11.62619 -11.35693 -11.04275 -10.93885 -10.93263 -10.65766 -10.63013 -10.22485 -9.96391 -9.78090 -9.71934 -9.43201 -9.25687 -8.97510 -8.66209 -8.27115 -7.65741 -5.94449 -4.00468 0.33814 0.89228 2.17399 2.28765 3.32191 3.40194 3.43778 3.54755 4.08799 4.17363 4.44238 4.49589 4.51430 4.55146 4.68305 4.73297 4.83970 4.86699 5.14292 5.26039 5.34465 5.35755 5.40687 5.51358 5.56603 5.71735 5.75431 5.84520 5.86978 5.98788 6.04608 6.15943 6.31421 6.41165 6.44024 6.56142 6.77792 6.79873 6.99025 7.25488 7.36315 7.41699 7.65695 7.75467 7.78072 7.82446 8.11619 8.20887 8.51020 9.03829 9.63682 11.11621 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.002464 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.169455 B =11360.254430 C =11667.637948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.494 6.494 6 C -0.082 4.082 7 C -0.126 4.126 8 C 0.093 3.907 9 N -0.452 5.452 10 C 0.140 3.860 11 C 0.099 3.901 12 N -0.532 5.532 13 C 0.067 3.933 14 C -0.118 4.118 15 C -0.110 4.110 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.068 3.932 27 C -0.090 4.090 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.023 0.977 45 H 0.061 0.939 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.777 -6.567 11.474 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.356 3.644 5 O -0.381 6.381 6 C -0.091 4.091 7 C -0.146 4.146 8 C -0.064 4.064 9 N -0.163 5.163 10 C 0.003 3.997 11 C -0.029 4.029 12 N -0.257 5.257 13 C -0.061 4.061 14 C -0.156 4.156 15 C -0.148 4.148 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.059 4.059 27 C -0.111 4.111 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.181 0.819 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.208 -6.527 11.051 24.790 hybrid contribution 0.523 0.107 0.275 0.601 sum -20.685 -6.420 11.327 24.441 Atomic orbital electron populations 1.21816 0.92324 1.03174 1.03650 1.23101 0.95494 0.79601 1.02971 1.86519 1.23458 1.32852 1.84128 1.21065 0.80791 0.89542 0.73020 1.90861 1.60392 1.42146 1.44737 1.19424 0.94095 0.90501 1.05068 1.22432 1.01495 0.92652 0.98024 1.22808 0.90982 0.96622 0.96001 1.67500 1.04656 1.35260 1.08855 1.21255 0.96731 0.87742 0.93975 1.21097 0.87099 1.02008 0.92715 1.62274 1.04137 1.48924 1.10392 1.22055 0.95167 0.93698 0.95185 1.21694 0.99209 1.00693 0.93985 1.21648 0.91027 0.97701 1.04428 1.18672 0.93256 0.96339 0.88119 0.94726 1.21179 0.97400 1.43946 0.92651 0.92730 1.24942 0.97815 0.95435 0.95725 1.69907 1.36553 1.48708 0.97526 0.86572 0.85182 0.78426 0.77998 1.19851 1.21075 1.21145 1.22352 0.85187 0.96698 1.01622 1.22151 0.93834 0.99272 0.95856 0.90023 0.91394 0.91311 0.90868 0.90975 0.83461 0.81875 0.89167 0.92936 0.92613 0.95254 0.93664 0.92360 0.95121 0.89162 0.93141 0.95918 0.92035 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.47 6.19 37.16 0.23 0.70 16 3 O -0.35 -3.48 9.58 -40.42 -0.39 -3.87 16 4 C 0.51 6.19 7.92 34.75 0.28 6.47 16 5 O -0.49 -7.19 16.23 -19.21 -0.31 -7.51 16 6 C -0.08 -0.97 5.91 -104.66 -0.62 -1.58 16 7 C -0.13 -1.21 9.71 -39.01 -0.38 -1.59 16 8 C 0.09 0.96 11.17 -17.59 -0.20 0.77 16 9 N -0.45 -6.14 8.63 -9.52 -0.08 -6.22 16 10 C 0.14 1.98 4.91 -82.63 -0.41 1.57 16 11 C 0.10 1.52 5.59 -4.97 -0.03 1.49 16 12 N -0.53 -10.02 4.80 -236.12 -1.13 -11.15 16 13 C 0.07 1.25 4.71 -3.83 -0.02 1.23 16 14 C -0.12 -2.42 6.09 -26.65 -0.16 -2.58 16 15 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 16 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 17 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.55 11.36 55.43 0.63 -24.92 16 22 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.07 1.45 4.65 -3.84 -0.02 1.43 16 27 C -0.09 -1.19 9.29 -39.01 -0.36 -1.55 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.15 1.03 7.71 -52.49 -0.40 0.62 16 34 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.05 0.80 8.08 -51.93 -0.42 0.39 16 37 H 0.06 0.99 5.76 -51.93 -0.30 0.69 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.27 8.12 -51.93 -0.42 0.84 16 46 H 0.15 1.97 7.74 -52.49 -0.41 1.57 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -31.18 374.33 -10.00 -41.18 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.30 Total: -1.14 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.03 Total: -8.38 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.59 Total: -42.29 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.70 Total: -11.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.18 -10.00 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233326272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.079 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds