Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.46959 * 2 1 4 4 C 1.34672 * 116.99848 * 180.02562 * 3 2 1 5 5 O 1.21425 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.48046 * 120.00036 * 180.02562 * 4 3 2 7 7 C 1.39883 * 120.92780 * 0.02562 * 6 4 3 8 8 C 1.38129 * 118.99652 * 180.02562 * 7 6 4 9 9 N 1.31825 * 120.90191 * 359.97438 * 8 7 6 10 10 C 1.31794 * 122.06166 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.54913 * 180.02562 * 10 9 8 12 12 N 1.46906 * 109.46965 * 274.99626 * 11 10 9 13 13 C 1.46850 * 110.99915 * 45.78965 * 12 11 10 14 14 C 1.53032 * 109.52098 * 185.84118 * 13 12 11 15 15 C 1.53119 * 109.28205 * 300.81949 * 14 13 12 16 16 C 1.53124 * 109.15796 * 57.65213 * 15 14 13 17 17 H 1.09000 * 109.49712 * 62.29080 * 16 15 14 18 18 C 1.50700 * 109.50308 * 182.40756 * 16 15 14 19 19 H 1.07994 * 120.00077 * 119.80427 * 18 16 15 20 20 C 1.37880 * 119.99690 * 299.80760 * 18 16 15 21 21 N 1.31514 * 120.00430 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99703 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47134 * 119.99920 * 22 20 18 25 25 H 1.48504 * 109.47221 * 239.99865 * 22 20 18 26 26 C 1.46844 * 110.99887 * 170.00048 * 12 11 10 27 27 C 1.38172 * 120.89913 * 0.27047 * 10 9 8 28 28 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46997 * 299.99900 * 1 2 3 30 30 H 1.08995 * 109.47161 * 59.99797 * 1 2 3 31 31 H 1.08997 * 109.46997 * 240.00099 * 2 1 3 32 32 H 1.08995 * 109.47161 * 120.00202 * 2 1 3 33 33 H 1.07998 * 120.49939 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.54455 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47133 * 154.99664 * 11 10 9 36 36 H 1.08996 * 109.47320 * 34.99404 * 11 10 9 37 37 H 1.09005 * 109.46314 * 305.85713 * 13 12 11 38 38 H 1.08998 * 109.46244 * 65.82281 * 13 12 11 39 39 H 1.09004 * 109.50441 * 180.87586 * 14 13 12 40 40 H 1.09002 * 109.53781 * 60.78566 * 14 13 12 41 41 H 1.09001 * 109.51997 * 297.75401 * 15 14 13 42 42 H 1.08995 * 109.57988 * 177.59198 * 15 14 13 43 43 H 0.96998 * 119.99941 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.46267 * 294.17336 * 26 12 11 45 45 H 1.08993 * 109.46596 * 54.14593 * 26 12 11 46 46 H 1.08001 * 120.50308 * 179.73131 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3491 1.5454 -0.0005 5 8 4.0888 0.5825 -0.0005 6 6 3.9150 2.9135 0.0000 7 6 3.0809 4.0365 0.0016 8 6 3.6516 5.2943 0.0015 9 7 4.9614 5.4436 0.0005 10 6 5.7829 4.4130 -0.0011 11 6 7.2713 4.6491 -0.0016 12 7 7.7353 4.8463 -1.3815 13 6 6.8535 5.7703 -2.1061 14 6 7.2800 5.8387 -3.5742 15 6 8.7318 6.3184 -3.6571 16 6 9.6224 5.3661 -2.8542 17 1 9.5767 4.3691 -3.2924 18 6 11.0445 5.8640 -2.8816 19 1 11.5460 6.1164 -1.9591 20 6 11.7051 5.9974 -4.0844 21 7 11.0945 5.6896 -5.2078 22 14 13.4682 6.6138 -4.1182 23 1 13.9233 6.8882 -2.7316 24 1 14.3419 5.5814 -4.7314 25 1 13.5407 7.8626 -4.9187 26 6 9.1279 5.3114 -1.4070 27 6 5.2981 3.1191 -0.0072 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0071 3.9217 0.0021 34 1 3.0160 6.1675 0.0023 35 1 7.7763 3.7857 0.4315 36 1 7.4987 5.5368 0.5885 37 1 5.8248 5.4154 -2.0430 38 1 6.9230 6.7629 -1.6611 39 1 6.6351 6.5365 -4.1085 40 1 7.1974 4.8494 -4.0243 41 1 8.8073 7.3239 -3.2430 42 1 9.0544 6.3281 -4.6982 43 1 11.5595 5.7831 -6.0539 44 1 9.1868 6.3061 -0.9653 45 1 9.7512 4.6232 -0.8361 46 1 5.9772 2.2793 -0.0128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233326272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = -68.308646 kcal Electronic energy + Delta-G solvation = -26316.488513 eV Core-core repulsion = 22591.180797 eV Total energy + Delta-G solvation = -3725.307716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04079 -41.04522 -39.54353 -37.81936 -35.88100 -34.20447 -33.80785 -32.51085 -32.16256 -31.53577 -27.77641 -26.93832 -26.46661 -24.36793 -23.90437 -23.45573 -22.86389 -21.73473 -20.36152 -19.13206 -18.47165 -18.15056 -17.71659 -17.23031 -16.97428 -16.74864 -16.50284 -16.04467 -15.42257 -15.30468 -15.09187 -14.91007 -14.66706 -14.55970 -14.43801 -14.07342 -13.67218 -13.64012 -13.41381 -12.99883 -12.92828 -12.84106 -12.80446 -12.55119 -12.50862 -12.40178 -11.99322 -11.85036 -11.72335 -11.59603 -11.40792 -11.07344 -10.92569 -10.66206 -10.59390 -10.36717 -10.15060 -9.16434 -8.07031 -6.20974 -0.57488 -0.00934 1.35958 1.38489 1.41270 1.42863 1.54375 2.43081 2.59665 3.11000 3.20160 3.29615 3.38359 3.61100 3.85132 3.94621 3.99485 4.05307 4.16898 4.22437 4.29519 4.33197 4.40239 4.46336 4.59926 4.66059 4.71342 4.74440 4.77288 4.85118 4.90384 4.93277 4.96416 4.99257 5.08477 5.10147 5.17039 5.34067 5.36514 5.50443 5.52125 5.64761 5.94320 6.10595 6.19171 6.24847 6.44978 6.48574 6.85366 6.91686 7.46810 8.98102 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.002464 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.169455 B =11360.254430 C =11667.637948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.346 6.346 4 C 0.516 3.484 5 O -0.527 6.527 6 C -0.092 4.092 7 C -0.102 4.102 8 C 0.096 3.904 9 N -0.473 5.473 10 C 0.124 3.876 11 C 0.102 3.898 12 N -0.542 5.542 13 C 0.079 3.921 14 C -0.111 4.111 15 C -0.102 4.102 16 C 0.052 3.948 17 H -0.003 1.003 18 C -0.533 4.533 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.082 3.918 27 C -0.100 4.100 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.201 0.799 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.020 0.980 45 H 0.065 0.935 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.070 -6.017 12.621 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.263 6.263 4 C 0.361 3.639 5 O -0.417 6.417 6 C -0.102 4.102 7 C -0.122 4.122 8 C -0.061 4.061 9 N -0.184 5.184 10 C -0.013 4.013 11 C -0.026 4.026 12 N -0.268 5.268 13 C -0.049 4.049 14 C -0.149 4.149 15 C -0.140 4.140 16 C 0.034 3.966 17 H 0.015 0.985 18 C -0.571 4.571 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.556 5.556 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.045 4.045 27 C -0.121 4.121 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.199 0.801 34 H 0.218 0.782 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.083 0.917 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.517 -5.980 12.215 27.166 hybrid contribution 1.085 -0.113 -0.066 1.093 sum -22.432 -6.093 12.149 26.228 Atomic orbital electron populations 1.21835 0.89851 1.04555 1.04007 1.23408 0.97355 0.78459 1.02846 1.86515 1.21985 1.34311 1.83459 1.21153 0.81330 0.89285 0.72179 1.90847 1.61268 1.43156 1.46461 1.19524 0.93872 0.91212 1.05542 1.22797 1.02853 0.91481 0.95037 1.23449 0.90131 0.98187 0.94363 1.67470 1.06164 1.35246 1.09514 1.20924 0.95958 0.88248 0.96139 1.21086 0.88692 1.02488 0.90343 1.62150 1.02900 1.48646 1.13060 1.21920 0.95796 0.93637 0.93516 1.21609 0.97085 1.00313 0.95916 1.21450 0.93341 0.97167 1.02066 1.18594 0.93132 0.94270 0.90646 0.98506 1.21541 0.98759 1.44060 0.92787 0.92762 1.25747 1.01905 0.95634 0.95395 1.70051 1.38105 1.49462 0.97989 0.85541 0.80204 0.77846 0.78255 1.19030 1.20714 1.20691 1.22022 0.87001 0.96755 0.98756 1.22070 0.94677 0.98721 0.96659 0.88151 0.90822 0.91093 0.91326 0.90938 0.80135 0.78222 0.88047 0.92871 0.90956 0.95494 0.91540 0.93542 0.95771 0.92337 0.93109 0.96188 0.91695 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 71.98 0.74 -0.28 16 2 C 0.05 0.71 6.19 71.98 0.45 1.16 16 3 O -0.35 -6.15 9.58 -55.82 -0.53 -6.69 16 4 C 0.52 11.91 7.92 70.42 0.56 12.46 16 5 O -0.53 -15.39 16.23 20.08 0.33 -15.07 16 6 C -0.09 -2.03 5.91 -19.89 -0.12 -2.15 16 7 C -0.10 -1.60 9.71 22.64 0.22 -1.38 16 8 C 0.10 1.65 11.17 84.67 0.95 2.59 16 9 N -0.47 -11.77 8.63 -184.05 -1.59 -13.36 16 10 C 0.12 3.35 4.91 42.55 0.21 3.56 16 11 C 0.10 3.06 5.59 85.56 0.48 3.54 16 12 N -0.54 -20.44 4.80 -900.95 -4.32 -24.77 16 13 C 0.08 2.90 4.71 86.32 0.41 3.31 16 14 C -0.11 -4.58 6.09 30.64 0.19 -4.39 16 15 C -0.10 -5.07 5.03 30.68 0.15 -4.92 16 16 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 17 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 18 C -0.53 -30.01 8.56 25.60 0.22 -29.80 16 19 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 20 C 0.01 0.66 5.30 84.66 0.45 1.11 16 21 N -0.92 -54.24 11.36 21.45 0.24 -53.99 16 22 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.08 3.55 4.65 86.33 0.40 3.95 16 27 C -0.10 -2.58 9.29 22.64 0.21 -2.37 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.18 1.63 7.71 -2.91 -0.02 1.61 16 34 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.10 2.76 8.04 -2.39 -0.02 2.74 16 36 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 37 H 0.07 2.44 5.76 -2.38 -0.01 2.43 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 43 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 2.72 8.12 -2.39 -0.02 2.70 16 46 H 0.14 3.82 7.74 -2.91 -0.02 3.80 16 Total: -1.00 -69.30 374.33 2.59 -66.71 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 5.48 Total: -10.90 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -5.67 Total: -92.12 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.21 Total: -21.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.30 2.59 -66.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233326272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.596 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds