Wall clock time and date at job start Tue Mar 31 2020 13:05:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46902 * 111.00338 * 2 1
4 4 C 1.50701 * 109.46595 * 293.95357 * 3 2 1
5 5 O 1.21279 * 120.00043 * 359.97438 * 4 3 2
6 6 N 1.34775 * 119.99656 * 180.02562 * 4 3 2
7 7 C 1.47152 * 120.98357 * 359.71357 * 6 4 3
8 8 C 1.53713 * 108.15997 * 129.43296 * 7 6 4
9 9 O 1.42964 * 109.14966 * 52.54002 * 8 7 6
10 10 C 1.42959 * 114.16508 * 297.29014 * 9 8 7
11 11 C 1.47154 * 120.98038 * 179.97438 * 6 4 3
12 12 C 1.46906 * 110.99939 * 123.94863 * 2 1 3
13 13 C 1.50705 * 109.46727 * 66.04181 * 12 2 1
14 14 C 1.37637 * 120.13230 * 260.00031 * 13 12 2
15 15 C 1.38613 * 120.24877 * 180.30002 * 14 13 12
16 16 C 1.38658 * 120.49851 * 359.44717 * 15 14 13
17 17 C 1.37597 * 120.25104 * 0.55013 * 16 15 14
18 18 C 1.40700 * 120.12399 * 80.02672 * 13 12 2
19 19 C 1.41399 * 120.24534 * 359.95314 * 18 13 12
20 20 H 1.08010 * 119.99838 * 334.18795 * 19 18 13
21 21 C 1.39940 * 120.00318 * 154.19132 * 19 18 13
22 22 N 1.30822 * 119.99912 * 343.50456 * 21 19 18
23 23 Si 1.86803 * 120.00192 * 163.51559 * 21 19 18
24 24 H 1.48494 * 109.47012 * 359.97438 * 23 21 19
25 25 H 1.48492 * 109.47407 * 119.99663 * 23 21 19
26 26 H 1.48508 * 109.46756 * 239.99409 * 23 21 19
27 27 H 1.09002 * 109.46824 * 296.05064 * 1 2 3
28 28 H 1.08999 * 109.46984 * 56.04749 * 1 2 3
29 29 H 1.08999 * 109.47492 * 176.04886 * 1 2 3
30 30 H 1.09002 * 109.46774 * 53.94985 * 3 2 1
31 31 H 1.08993 * 109.47336 * 173.95121 * 3 2 1
32 32 H 1.08993 * 109.68405 * 249.20919 * 7 6 4
33 33 H 1.09002 * 109.68167 * 9.77015 * 7 6 4
34 34 H 1.08995 * 109.65834 * 292.57399 * 8 7 6
35 35 H 1.09007 * 109.48616 * 172.40054 * 8 7 6
36 36 H 1.08998 * 109.51437 * 302.65538 * 10 9 8
37 37 H 1.08998 * 109.55570 * 182.52971 * 10 9 8
38 38 H 1.08996 * 109.68196 * 350.23385 * 11 6 4
39 39 H 1.09006 * 109.68282 * 110.79037 * 11 6 4
40 40 H 1.09002 * 109.47220 * 306.05071 * 12 2 1
41 41 H 1.08999 * 109.47396 * 186.04626 * 12 2 1
42 42 H 1.07997 * 119.87112 * 0.02562 * 14 13 12
43 43 H 1.07990 * 119.75082 * 179.70117 * 15 14 13
44 44 H 1.08002 * 119.87586 * 180.30194 * 16 15 14
45 45 H 1.07997 * 120.12879 * 179.74773 * 17 16 15
46 46 H 0.97001 * 120.00439 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0470 -1.2985
5 8 1.0055 1.4452 -2.1411
6 7 2.0190 3.3197 -1.5238
7 6 2.7813 4.0718 -0.5145
8 6 4.0123 4.6840 -1.2020
9 8 3.5897 5.4174 -2.3542
10 6 2.9607 4.6179 -3.3586
11 6 1.6812 4.0001 -2.7841
12 6 1.9954 -0.7659 1.1377
13 6 1.6368 -2.2204 0.9731
14 6 0.5681 -2.7505 1.6596
15 6 0.2399 -4.0894 1.5148
16 6 0.9751 -4.9067 0.6698
17 6 2.0474 -4.3983 -0.0265
18 6 2.3934 -3.0418 0.1172
19 6 3.4931 -2.5081 -0.5936
20 1 3.5242 -1.4544 -0.8287
21 6 4.5412 -3.3452 -0.9925
22 7 4.6770 -4.5276 -0.4493
23 14 5.7467 -2.7742 -2.3003
24 1 5.3766 -1.4090 -2.7524
25 1 7.1190 -2.7532 -1.7334
26 1 5.7024 -3.7067 -3.4552
27 1 -0.3633 0.4513 0.9233
28 1 -0.3633 0.5740 -0.8524
29 1 -0.3634 -1.0252 -0.0708
30 1 1.5611 1.9273 0.8309
31 1 3.0797 1.3444 0.1083
32 1 2.1582 4.8633 -0.0985
33 1 3.1007 3.3986 0.2811
34 1 4.6951 3.8906 -1.5058
35 1 4.5195 5.3553 -0.5090
36 1 3.6397 3.8241 -3.6702
37 1 2.7106 5.2409 -4.2172
38 1 1.2716 3.2796 -3.4920
39 1 0.9489 4.7847 -2.5929
40 1 1.5610 -0.3871 2.0629
41 1 3.0797 -0.6611 1.1758
42 1 -0.0141 -2.1219 2.3171
43 1 -0.5972 -4.4980 2.0611
44 1 0.7075 -5.9474 0.5608
45 1 2.6211 -5.0376 -0.6811
46 1 5.4033 -5.1080 -0.7260
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001235512846.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:05:35
Heat of formation + Delta-G solvation = -59.469680 kcal
Electronic energy + Delta-G solvation = -27312.266646 eV
Core-core repulsion = 23587.342217 eV
Total energy + Delta-G solvation = -3724.924430 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.40631 -39.87956 -39.26124 -37.30654 -35.79011 -35.44320 -32.74987 -32.16208
-31.27686 -29.78439 -28.20375 -27.89295 -26.78439 -25.12051 -23.87009 -22.75919
-22.64433 -21.10662 -20.13898 -18.98991 -18.40828 -17.50270 -17.20904 -17.00452
-16.81926 -16.33621 -16.25299 -16.02520 -15.80826 -15.66581 -15.56238 -14.95710
-14.88304 -14.37503 -14.30031 -13.92046 -13.51039 -13.37202 -13.29946 -12.92141
-12.89386 -12.74584 -12.72015 -12.50097 -12.46311 -12.34567 -12.31777 -12.04701
-11.73500 -11.30861 -11.23855 -11.11965 -10.99080 -10.68407 -9.60653 -9.22778
-9.17322 -8.97560 -8.55415 -6.20613 1.01029 1.14941 1.37005 1.50188
1.53770 1.58758 1.81107 2.22820 2.81123 2.85439 3.17210 3.52846
3.74679 3.90984 3.99062 4.10030 4.19299 4.20860 4.27067 4.29018
4.40256 4.40759 4.51411 4.54634 4.63781 4.65254 4.67276 4.74718
4.77822 4.83361 4.91291 4.93052 5.13847 5.17769 5.28655 5.41430
5.42347 5.58681 5.83328 6.01884 6.08112 6.12958 6.21995 6.26107
6.33392 6.39985 6.50713 6.82407 7.09169 7.17480 7.17721 8.41346
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.012827 B = 0.004169 C = 0.003407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2182.407677 B = 6715.189317 C = 8217.086964
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.538 5.538
3 C 0.041 3.959
4 C 0.515 3.485
5 O -0.562 6.562
6 N -0.622 5.622
7 C 0.069 3.931
8 C 0.043 3.957
9 O -0.392 6.392
10 C 0.053 3.947
11 C 0.076 3.924
12 C 0.136 3.864
13 C -0.196 4.196
14 C -0.088 4.088
15 C -0.246 4.246
16 C -0.116 4.116
17 C -0.196 4.196
18 C 0.101 3.899
19 C -0.467 4.467
20 H 0.083 0.917
21 C 0.035 3.965
22 N -0.829 5.829
23 Si 0.968 3.032
24 H -0.264 1.264
25 H -0.263 1.263
26 H -0.273 1.273
27 H 0.032 0.968
28 H 0.064 0.936
29 H 0.049 0.951
30 H 0.088 0.912
31 H 0.113 0.887
32 H 0.095 0.905
33 H 0.111 0.889
34 H 0.050 0.950
35 H 0.135 0.865
36 H 0.045 0.955
37 H 0.128 0.872
38 H 0.081 0.919
39 H 0.087 0.913
40 H 0.041 0.959
41 H 0.069 0.931
42 H 0.113 0.887
43 H 0.112 0.888
44 H 0.101 0.899
45 H 0.094 0.906
46 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.512 19.324 0.866 19.350
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 N -0.262 5.262
3 C -0.090 4.090
4 C 0.304 3.696
5 O -0.439 6.439
6 N -0.358 5.358
7 C -0.053 4.053
8 C -0.034 4.034
9 O -0.310 6.310
10 C -0.025 4.025
11 C -0.046 4.046
12 C 0.010 3.990
13 C -0.198 4.198
14 C -0.107 4.107
15 C -0.266 4.266
16 C -0.134 4.134
17 C -0.216 4.216
18 C 0.098 3.902
19 C -0.497 4.497
20 H 0.101 0.899
21 C -0.179 4.179
22 N -0.456 5.456
23 Si 0.790 3.210
24 H -0.188 1.188
25 H -0.187 1.187
26 H -0.198 1.198
27 H 0.051 0.949
28 H 0.083 0.917
29 H 0.068 0.932
30 H 0.105 0.895
31 H 0.131 0.869
32 H 0.113 0.887
33 H 0.129 0.871
34 H 0.069 0.931
35 H 0.152 0.848
36 H 0.064 0.936
37 H 0.145 0.855
38 H 0.100 0.900
39 H 0.105 0.895
40 H 0.059 0.941
41 H 0.087 0.913
42 H 0.131 0.869
43 H 0.130 0.870
44 H 0.120 0.880
45 H 0.112 0.888
46 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -0.495 18.776 -0.017 18.783
hybrid contribution 0.186 -0.498 -0.039 0.533
sum -0.309 18.278 -0.056 18.280
Atomic orbital electron populations
1.22270 0.87154 1.01602 0.99897 1.61503 1.08464 1.11351 1.44872
1.22036 1.02747 0.89908 0.94264 1.21015 0.78365 0.80924 0.89335
1.90664 1.41071 1.64387 1.47826 1.48297 1.56256 1.12281 1.18972
1.22795 0.93897 0.97371 0.91206 1.23253 0.94842 0.97254 0.88081
1.87936 1.78098 1.35633 1.29355 1.22998 0.92384 0.95581 0.91496
1.22298 0.98567 0.97270 0.86500 1.20540 0.99147 0.89757 0.89529
1.19828 1.01257 0.95659 1.03061 1.20712 0.96145 0.94970 0.98846
1.20680 1.04174 0.94820 1.06881 1.20925 0.96115 0.98437 0.97940
1.21324 0.98828 0.97349 1.04087 1.17730 0.91661 0.91447 0.89337
1.19820 1.02331 0.96531 1.31030 0.89883 1.26659 0.99997 0.94362
0.96906 1.69902 1.29562 1.09709 1.36436 0.85373 0.77882 0.79325
0.78416 1.18818 1.18725 1.19787 0.94935 0.91704 0.93199 0.89460
0.86907 0.88668 0.87065 0.93112 0.84766 0.93645 0.85457 0.90032
0.89472 0.94052 0.91276 0.86890 0.86965 0.88042 0.88806 0.90636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.39 8.91 127.69 1.14 2.53 16
2 N -0.54 -20.01 4.22 -931.63 -3.93 -23.94 16
3 C 0.04 1.14 3.82 85.56 0.33 1.47 16
4 C 0.51 15.64 7.40 87.66 0.65 16.28 16
5 O -0.56 -22.47 13.80 -3.03 -0.04 -22.51 16
6 N -0.62 -13.98 3.01 -816.61 -2.46 -16.44 16
7 C 0.07 0.99 6.57 86.49 0.57 1.55 16
8 C 0.04 0.59 7.00 72.22 0.51 1.10 16
9 O -0.39 -7.04 10.74 -148.98 -1.60 -8.64 16
10 C 0.05 0.91 6.98 72.07 0.50 1.42 16
11 C 0.08 1.56 6.63 86.34 0.57 2.13 16
12 C 0.14 5.25 4.29 85.56 0.37 5.61 16
13 C -0.20 -9.18 4.63 -19.40 -0.09 -9.27 16
14 C -0.09 -3.81 8.71 22.22 0.19 -3.62 16
15 C -0.25 -10.94 10.05 22.46 0.23 -10.71 16
16 C -0.12 -5.63 10.02 22.22 0.22 -5.41 16
17 C -0.20 -10.76 8.69 22.73 0.20 -10.57 16
18 C 0.10 5.46 5.56 -21.29 -0.12 5.34 16
19 C -0.47 -25.20 8.18 23.46 0.19 -25.01 16
20 H 0.08 4.42 6.85 -2.91 -0.02 4.40 16
21 C 0.03 1.78 5.16 85.26 0.44 2.22 16
22 N -0.83 -44.40 10.97 21.82 0.24 -44.16 16
23 Si 0.97 40.09 29.59 68.60 2.03 42.12 16
24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16
25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16
26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
28 H 0.06 2.43 5.83 -2.39 -0.01 2.42 16
29 H 0.05 2.02 6.65 -2.39 -0.02 2.00 16
30 H 0.09 1.84 7.99 -2.39 -0.02 1.82 16
31 H 0.11 2.83 7.46 -2.39 -0.02 2.81 16
32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
33 H 0.11 1.25 6.05 -2.39 -0.01 1.24 16
34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
35 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16
36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.08 2.02 7.08 -2.39 -0.02 2.00 16
39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16
40 H 0.04 1.37 7.98 -2.39 -0.02 1.35 16
41 H 0.07 2.74 7.13 -2.39 -0.02 2.72 16
42 H 0.11 4.14 8.03 -2.91 -0.02 4.12 16
43 H 0.11 4.28 8.06 -2.92 -0.02 4.25 16
44 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16
45 H 0.09 5.44 6.21 -2.91 -0.02 5.42 16
46 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16
Total: -1.00 -69.98 364.94 1.10 -68.88
By element:
Atomic # 1 Polarization: 28.65 SS G_CDS: 0.97 Total: 29.62 kcal
Atomic # 6 Polarization: -30.82 SS G_CDS: 5.89 Total: -24.93 kcal
Atomic # 7 Polarization: -78.40 SS G_CDS: -6.16 Total: -84.55 kcal
Atomic # 8 Polarization: -29.50 SS G_CDS: -1.64 Total: -31.15 kcal
Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal
Total: -69.98 1.10 -68.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001235512846.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.413 kcal
(2) G-P(sol) polarization free energy of solvation -69.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.883 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.470 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds